© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8600.t1 |
| Gene name | |
| Location | scaffold_35:28090..29131 |
| Strand | - |
| Gene length (bp) | 1041 |
| Transcript length (bp) | 942 |
| Coding sequence length (bp) | 942 |
| Protein length (aa) | 314 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00056 | Ldh_1_N | lactate/malate dehydrogenase, NAD binding domain | 4.1E-24 | 11 | 149 |
| PF02866 | Ldh_1_C | lactate/malate dehydrogenase, alpha/beta C-terminal domain | 3.3E-13 | 152 | 310 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 30 | (None) |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1372.86 | 737.96 | 2007.75 |
| 5d_25C | Five days - 25 degrees Celsius | 2990.31 | 1450.21 | 4530.42 |
| 7d_25C | Seven days - 25 degrees Celsius | 3156.61 | 1485.44 | 4827.77 |
| 10d_25C | Ten days - 25 degrees Celsius | 4585.14 | 2053.53 | 7116.75 |
| 7d_15C | Seven days - 15 degrees Celsius | 2826.22 | 1296.43 | 4356.02 |
| 7d_30C | Seven days - 30 degrees Celsius | 2670.28 | 1276.36 | 4064.21 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.001804 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.006000 | yes |
| 3d_25C | 7d_30C | 0.010411 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.899700 | no |
| 5d_25C | 7d_15C | 0.898555 | no |
| 5d_25C | 7d_30C | 0.773437 | no |
| 5d_25C | 10d_25C | 0.140903 | no |
| 7d_25C | 7d_15C | 0.787159 | no |
| 7d_25C | 7d_30C | 0.649314 | no |
| 7d_25C | 10d_25C | 0.222175 | no |
| 7d_15C | 7d_30C | 0.899576 | no |
| 7d_15C | 10d_25C | 0.107450 | no |
| 7d_30C | 10d_25C | 0.062630 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 6403 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8600.t1 MLSRDSNAITRIAIIGVGQVGAALAYALILNSTAGELLLVDTKPDLRDGQVRDLSDVSYSCNSGTRVRAATHHEA GQCDVVVITAGSKSYRGETTIQHMYQKVAIIQSITNAMKPFRSDTILLIVAHPVDLITSFAQEHSGLPASQVLGS GTFLDSVRLRGMLADKAGVAANAIDLQVLGVHGESEVVAWSTATLCGVPIDKALPSNTFNPKDLANECKHRSQRI IQAKGTVSFGIGSALSRICSSILMDKRDVYPISHFQPEWGCCFSLPAALGRSGIIRTVEMATNSNEKADIRDSVE ILSDTLKRVRENQ* |
| Coding | >Pro_DTO377G3_2|g8600.t1 ATGCTCTCTAGAGATTCAAACGCGATTACTCGGATTGCAATAATCGGTGTGGGCCAGGTTGGCGCCGCTCTTGCT TACGCGCTAATCCTAAATTCCACCGCTGGTGAGCTGCTCTTGGTCGATACCAAACCCGACTTGAGAGACGGCCAG GTACGGGACCTCTCCGATGTAAGCTACAGTTGCAATAGCGGAACCCGCGTCCGAGCAGCCACACACCATGAAGCA GGCCAATGCGATGTTGTGGTCATCACCGCCGGATCAAAGTCTTACAGAGGCGAAACTACGATCCAGCACATGTAC CAGAAGGTCGCCATTATTCAGAGCATCACCAACGCAATGAAGCCATTCAGATCAGACACAATCTTACTGATCGTG GCACACCCCGTCGACCTTATCACCTCCTTCGCTCAAGAGCATTCCGGACTACCAGCCTCTCAGGTGCTGGGCTCG GGAACCTTTCTTGATTCAGTAAGGCTTCGCGGAATGTTAGCAGACAAAGCCGGAGTCGCCGCAAATGCAATAGAT CTTCAGGTATTGGGAGTGCACGGGGAGTCAGAGGTTGTTGCATGGTCGACGGCAACACTTTGCGGGGTCCCCATT GACAAAGCGCTGCCCAGCAACACTTTCAACCCGAAAGATCTTGCCAACGAGTGTAAACACAGATCCCAAAGGATT ATCCAAGCGAAAGGAACAGTATCTTTTGGAATTGGCTCCGCCCTGTCCAGAATCTGCTCTTCGATCCTAATGGAC AAACGAGATGTCTATCCTATTAGCCATTTCCAACCAGAGTGGGGTTGCTGTTTCAGCTTGCCCGCGGCCCTTGGA AGAAGCGGAATCATAAGGACTGTTGAAATGGCAACAAATAGTAACGAGAAGGCTGATATACGCGACTCGGTGGAG ATTCTAAGCGATACACTCAAGAGAGTCCGTGAGAATCAATAA |
| Transcript | >Pro_DTO377G3_2|g8600.t1 ATGCTCTCTAGAGATTCAAACGCGATTACTCGGATTGCAATAATCGGTGTGGGCCAGGTTGGCGCCGCTCTTGCT TACGCGCTAATCCTAAATTCCACCGCTGGTGAGCTGCTCTTGGTCGATACCAAACCCGACTTGAGAGACGGCCAG GTACGGGACCTCTCCGATGTAAGCTACAGTTGCAATAGCGGAACCCGCGTCCGAGCAGCCACACACCATGAAGCA GGCCAATGCGATGTTGTGGTCATCACCGCCGGATCAAAGTCTTACAGAGGCGAAACTACGATCCAGCACATGTAC CAGAAGGTCGCCATTATTCAGAGCATCACCAACGCAATGAAGCCATTCAGATCAGACACAATCTTACTGATCGTG GCACACCCCGTCGACCTTATCACCTCCTTCGCTCAAGAGCATTCCGGACTACCAGCCTCTCAGGTGCTGGGCTCG GGAACCTTTCTTGATTCAGTAAGGCTTCGCGGAATGTTAGCAGACAAAGCCGGAGTCGCCGCAAATGCAATAGAT CTTCAGGTATTGGGAGTGCACGGGGAGTCAGAGGTTGTTGCATGGTCGACGGCAACACTTTGCGGGGTCCCCATT GACAAAGCGCTGCCCAGCAACACTTTCAACCCGAAAGATCTTGCCAACGAGTGTAAACACAGATCCCAAAGGATT ATCCAAGCGAAAGGAACAGTATCTTTTGGAATTGGCTCCGCCCTGTCCAGAATCTGCTCTTCGATCCTAATGGAC AAACGAGATGTCTATCCTATTAGCCATTTCCAACCAGAGTGGGGTTGCTGTTTCAGCTTGCCCGCGGCCCTTGGA AGAAGCGGAATCATAAGGACTGTTGAAATGGCAACAAATAGTAACGAGAAGGCTGATATACGCGACTCGGTGGAG ATTCTAAGCGATACACTCAAGAGAGTCCGTGAGAATCAATAA |
| Gene | >Pro_DTO377G3_2|g8600.t1 ATGCTCTCTAGAGATTCAAACGCGATTACTCGGATTGCAATAATCGGTGTGGGCCAGGTTGGCGCCGCTCTTGCT TACGCGCTAATCCTAAATTCCACCGCTGGTGAGCTGCTCTTGGTCGATACCAAACCCGACTTGAGAGACGGCCAG GTACGGGACCTCTCCGATGTAAGCTACAGTTGCAATAGCGGAACCCGCGTCCGAGCAGCCACACACCATGAAGCA GGCCAATGCGATGTTGTGGTCATCACCGCCGGATCAAAGTCTTACAGAGGTAGGAGATACGATACGAAGAAGATT TTTTCTAATTATTCAGCAGGCGAAACTACGATCCAGCACATGTACCAGAAGGTCGCCATTATTCAGAGCATCACC AACGCAATGAAGCCATTCAGATCAGACACAATCTTACTGATCGTGGCACACCCCGTCGACCTTATCACCTCCTTC GCTCAAGAGCATTCCGGACTACCAGCCTCTCAGGTGCTGGGCTCGGGAACCTTTCTTGATTCAGTAAGGCTTCGC GGAATGTTAGCAGACAAAGCCGGAGTATGTTCTTATGGTTCGACAATTTCTTTCAAGGCAAGGCTAATTGGAATC TAGGTCGCCGCAAATGCAATAGATCTTCAGGTATTGGGAGTGCACGGGGAGTCAGAGGTTGTTGCATGGTCGACG GCAACACTTTGCGGGGTCCCCATTGACAAAGCGCTGCCCAGCAACACTTTCAACCCGAAAGATCTTGCCAACGAG TGTAAACACAGATCCCAAAGGATTATCCAAGCGAAAGGAACAGTATCTTTTGGAATTGGCTCCGCCCTGTCCAGA ATCTGCTCTTCGATCCTAATGGACAAACGAGATGTCTATCCTATTAGCCATTTCCAACCAGAGTGGGGTTGCTGT TTCAGCTTGCCCGCGGCCCTTGGAAGAAGCGGAATCATAAGGACTGTTGAAATGGCAACAAATAGTAACGAGAAG GCTGATATACGCGACTCGGTGGAGATTCTAAGCGATACACTCAAGAGAGTCCGTGAGAATCAATAA |