Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8600.t1
Gene name
Locationscaffold_35:28090..29131
Strand-
Gene length (bp)1041
Transcript length (bp)942
Coding sequence length (bp)942
Protein length (aa) 314

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain 7.7E-25 11 149
PF02866 Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain 5.7E-14 152 311

GO

GO Term Description Terminal node
GO:0016491 oxidoreductase activity Yes
GO:0055114 oxidation-reduction process Yes
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Yes
GO:0008150 biological_process No
GO:0008152 metabolic process No
GO:0003824 catalytic activity No
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 26 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8600.t1
MLSRDSNAITRIAIIGVGQVGAALAYALILNSTAGELLLVDTKPDLRDGQVRDLSDVSYSCNSGTRVRAATHHEA
GQCDVVVITAGSKSYRGETTIQHMYQKVAIIQSITNAMKPFRSDTILLIVAHPVDLITSFAQEHSGLPASQVLGS
GTFLDSVRLRGMLADKAGVAANAIDLQVLGVHGESEVVAWSTATLCGVPIDKALPSNTFNPKDLANECKHRSQRI
IQAKGTVSFGIGSALSRICSSILMDKRDVYPISHFQPEWGCCFSLPAALGRSGIIRTVEMATNSNEKADIRDSVE
ILSDTLKRVRENQ*
Coding >Pro_DTO377G3_2|g8600.t1
ATGCTCTCTAGAGATTCAAACGCGATTACTCGGATTGCAATAATCGGTGTGGGCCAGGTTGGCGCCGCTCTTGCT
TACGCGCTAATCCTAAATTCCACCGCTGGTGAGCTGCTCTTGGTCGATACCAAACCCGACTTGAGAGACGGCCAG
GTACGGGACCTCTCCGATGTAAGCTACAGTTGCAATAGCGGAACCCGCGTCCGAGCAGCCACACACCATGAAGCA
GGCCAATGCGATGTTGTGGTCATCACCGCCGGATCAAAGTCTTACAGAGGCGAAACTACGATCCAGCACATGTAC
CAGAAGGTCGCCATTATTCAGAGCATCACCAACGCAATGAAGCCATTCAGATCAGACACAATCTTACTGATCGTG
GCACACCCCGTCGACCTTATCACCTCCTTCGCTCAAGAGCATTCCGGACTACCAGCCTCTCAGGTGCTGGGCTCG
GGAACCTTTCTTGATTCAGTAAGGCTTCGCGGAATGTTAGCAGACAAAGCCGGAGTCGCCGCAAATGCAATAGAT
CTTCAGGTATTGGGAGTGCACGGGGAGTCAGAGGTTGTTGCATGGTCGACGGCAACACTTTGCGGGGTCCCCATT
GACAAAGCGCTGCCCAGCAACACTTTCAACCCGAAAGATCTTGCCAACGAGTGTAAACACAGATCCCAAAGGATT
ATCCAAGCGAAAGGAACAGTATCTTTTGGAATTGGCTCCGCCCTGTCCAGAATCTGCTCTTCGATCCTAATGGAC
AAACGAGATGTCTATCCTATTAGCCATTTCCAACCAGAGTGGGGTTGCTGTTTCAGCTTGCCCGCGGCCCTTGGA
AGAAGCGGAATCATAAGGACTGTTGAAATGGCAACAAATAGTAACGAGAAGGCTGATATACGCGACTCGGTGGAG
ATTCTAAGCGATACACTCAAGAGAGTCCGTGAGAATCAATAA
Transcript >Pro_DTO377G3_2|g8600.t1
ATGCTCTCTAGAGATTCAAACGCGATTACTCGGATTGCAATAATCGGTGTGGGCCAGGTTGGCGCCGCTCTTGCT
TACGCGCTAATCCTAAATTCCACCGCTGGTGAGCTGCTCTTGGTCGATACCAAACCCGACTTGAGAGACGGCCAG
GTACGGGACCTCTCCGATGTAAGCTACAGTTGCAATAGCGGAACCCGCGTCCGAGCAGCCACACACCATGAAGCA
GGCCAATGCGATGTTGTGGTCATCACCGCCGGATCAAAGTCTTACAGAGGCGAAACTACGATCCAGCACATGTAC
CAGAAGGTCGCCATTATTCAGAGCATCACCAACGCAATGAAGCCATTCAGATCAGACACAATCTTACTGATCGTG
GCACACCCCGTCGACCTTATCACCTCCTTCGCTCAAGAGCATTCCGGACTACCAGCCTCTCAGGTGCTGGGCTCG
GGAACCTTTCTTGATTCAGTAAGGCTTCGCGGAATGTTAGCAGACAAAGCCGGAGTCGCCGCAAATGCAATAGAT
CTTCAGGTATTGGGAGTGCACGGGGAGTCAGAGGTTGTTGCATGGTCGACGGCAACACTTTGCGGGGTCCCCATT
GACAAAGCGCTGCCCAGCAACACTTTCAACCCGAAAGATCTTGCCAACGAGTGTAAACACAGATCCCAAAGGATT
ATCCAAGCGAAAGGAACAGTATCTTTTGGAATTGGCTCCGCCCTGTCCAGAATCTGCTCTTCGATCCTAATGGAC
AAACGAGATGTCTATCCTATTAGCCATTTCCAACCAGAGTGGGGTTGCTGTTTCAGCTTGCCCGCGGCCCTTGGA
AGAAGCGGAATCATAAGGACTGTTGAAATGGCAACAAATAGTAACGAGAAGGCTGATATACGCGACTCGGTGGAG
ATTCTAAGCGATACACTCAAGAGAGTCCGTGAGAATCAATAA
Gene >Pro_DTO377G3_2|g8600.t1
ATGCTCTCTAGAGATTCAAACGCGATTACTCGGATTGCAATAATCGGTGTGGGCCAGGTTGGCGCCGCTCTTGCT
TACGCGCTAATCCTAAATTCCACCGCTGGTGAGCTGCTCTTGGTCGATACCAAACCCGACTTGAGAGACGGCCAG
GTACGGGACCTCTCCGATGTAAGCTACAGTTGCAATAGCGGAACCCGCGTCCGAGCAGCCACACACCATGAAGCA
GGCCAATGCGATGTTGTGGTCATCACCGCCGGATCAAAGTCTTACAGAGGTAGGAGATACGATACGAAGAAGATT
TTTTCTAATTATTCAGCAGGCGAAACTACGATCCAGCACATGTACCAGAAGGTCGCCATTATTCAGAGCATCACC
AACGCAATGAAGCCATTCAGATCAGACACAATCTTACTGATCGTGGCACACCCCGTCGACCTTATCACCTCCTTC
GCTCAAGAGCATTCCGGACTACCAGCCTCTCAGGTGCTGGGCTCGGGAACCTTTCTTGATTCAGTAAGGCTTCGC
GGAATGTTAGCAGACAAAGCCGGAGTATGTTCTTATGGTTCGACAATTTCTTTCAAGGCAAGGCTAATTGGAATC
TAGGTCGCCGCAAATGCAATAGATCTTCAGGTATTGGGAGTGCACGGGGAGTCAGAGGTTGTTGCATGGTCGACG
GCAACACTTTGCGGGGTCCCCATTGACAAAGCGCTGCCCAGCAACACTTTCAACCCGAAAGATCTTGCCAACGAG
TGTAAACACAGATCCCAAAGGATTATCCAAGCGAAAGGAACAGTATCTTTTGGAATTGGCTCCGCCCTGTCCAGA
ATCTGCTCTTCGATCCTAATGGACAAACGAGATGTCTATCCTATTAGCCATTTCCAACCAGAGTGGGGTTGCTGT
TTCAGCTTGCCCGCGGCCCTTGGAAGAAGCGGAATCATAAGGACTGTTGAAATGGCAACAAATAGTAACGAGAAG
GCTGATATACGCGACTCGGTGGAGATTCTAAGCGATACACTCAAGAGAGTCCGTGAGAATCAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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