© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8594.t1 |
| Gene name | |
| Location | scaffold_35:12814..14361 |
| Strand | + |
| Gene length (bp) | 1547 |
| Transcript length (bp) | 1377 |
| Coding sequence length (bp) | 1377 |
| Protein length (aa) | 459 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01490 | Aa_trans | Transmembrane amino acid transporter protein | 1.2E-25 | 39 | 434 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 39 | 58 | 19 |
| 2 | 68 | 90 | 22 |
| 3 | 120 | 142 | 22 |
| 4 | 152 | 169 | 17 |
| 5 | 176 | 198 | 22 |
| 6 | 225 | 247 | 22 |
| 7 | 260 | 282 | 22 |
| 8 | 306 | 328 | 22 |
| 9 | 340 | 362 | 22 |
| 10 | 372 | 394 | 22 |
| 11 | 415 | 437 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.40 | 0.0 | 0.91 |
| 5d_25C | Five days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.02 | 0.0 | 0.12 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.09 | 0.0 | 0.31 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8594.t1 MTVKEKTSVNDAELGSPGDSTEEYEVFKKTEDGVSFRSVGWFKACIIFVKVLFATGVLSLPASLYSLGAVGGSIS IVAWGAFNTYSFVILGNFRKKHPHCHSIADMAEVAGGFFAKELTGILFLIGYVLVTGSGIIGVSTALNALSHHAA CTVWWSFIGAVVIIATASVRKLQHVGWLTYAGFISIYAAVLIVVIGVTTRDRPAAAPQEGPYELGYVAINNPGFA AGMVASSTIFVSTAGTSAFIPVMSEMRNPKDYKKALYLCMVVVNASYLAFSLVVYRWCGQWVASPSLGSAGQTIK MVSYGVALLGLVVSATIYLHIAAKYIFVRILGNTRHLQSNTVIHWVTWMSCTVGLGAISFILSETIPIFNYLVAL IGSVCFAPLAMCLPGFLWLHSNGHYRKGTLMQKVIYLLHWGMVLLGIFFLVGATYGVIIQIIDAYATGMIGSTFS CLDNSSSS* |
| Coding | >Pro_DTO377G3_2|g8594.t1 ATGACCGTCAAAGAGAAGACAAGCGTAAATGACGCGGAGCTGGGAAGCCCTGGGGACTCTACCGAGGAGTACGAG GTCTTCAAGAAAACCGAGGATGGCGTCAGCTTCCGCAGTGTTGGCTGGTTCAAGGCGTGCATTATCTTCGTGAAG GTCCTCTTTGCGACGGGTGTGCTGTCGCTGCCAGCTTCACTGTACTCCCTCGGTGCGGTAGGTGGCTCGATCAGT ATCGTCGCATGGGGCGCGTTCAACACCTACTCTTTCGTGATTCTGGGCAACTTCCGCAAGAAGCATCCTCACTGC CACTCCATCGCCGATATGGCGGAAGTCGCCGGTGGTTTCTTCGCGAAAGAGCTTACCGGTATACTCTTCCTCATC GGCTACGTCCTTGTCACGGGCAGTGGTATTATCGGAGTTTCAACGGCCTTGAATGCGCTTTCGCACCACGCTGCG TGCACTGTCTGGTGGTCTTTCATTGGAGCGGTTGTGATCATCGCGACAGCTTCGGTACGCAAACTCCAGCATGTG GGCTGGCTCACATATGCAGGATTCATTTCGATCTATGCCGCCGTTCTGATCGTTGTTATCGGAGTCACAACGCGC GACCGGCCGGCTGCCGCACCCCAGGAGGGCCCTTACGAGCTCGGCTACGTGGCAATCAACAACCCCGGATTTGCG GCTGGCATGGTCGCTTCCAGTACTATCTTCGTCTCTACGGCTGGTACCAGCGCCTTCATCCCGGTGATGTCGGAA ATGCGAAACCCGAAGGACTACAAGAAGGCCCTATACCTGTGCATGGTTGTGGTTAATGCGTCGTACCTTGCTTTC AGCTTGGTTGTGTATCGTTGGTGTGGACAATGGGTGGCTAGTCCGTCTTTGGGTAGCGCTGGACAGACGATCAAG ATGGTATCTTACGGTGTTGCGCTGTTAGGACTGGTCGTCAGTGCCACGATCTACTTGCATATCGCCGCCAAATAC ATATTTGTGCGTATCTTGGGTAACACGCGCCATCTGCAATCCAACACCGTCATTCATTGGGTTACTTGGATGAGC TGTACGGTCGGTCTCGGTGCTATTTCCTTCATCCTCAGCGAGACTATCCCTATCTTCAACTACCTGGTTGCCCTA ATTGGGTCCGTTTGCTTCGCGCCTCTGGCCATGTGCCTTCCCGGTTTCTTGTGGCTACACAGCAATGGTCATTAC CGAAAGGGCACACTGATGCAGAAGGTTATCTACCTGCTGCACTGGGGAATGGTGCTCCTCGGAATTTTCTTCCTT GTCGGCGCGACGTACGGTGTTATCATTCAGATCATCGATGCCTACGCAACGGGAATGATTGGCTCCACTTTCAGC TGCTTGGACAACTCCAGCTCGTCGTAG |
| Transcript | >Pro_DTO377G3_2|g8594.t1 ATGACCGTCAAAGAGAAGACAAGCGTAAATGACGCGGAGCTGGGAAGCCCTGGGGACTCTACCGAGGAGTACGAG GTCTTCAAGAAAACCGAGGATGGCGTCAGCTTCCGCAGTGTTGGCTGGTTCAAGGCGTGCATTATCTTCGTGAAG GTCCTCTTTGCGACGGGTGTGCTGTCGCTGCCAGCTTCACTGTACTCCCTCGGTGCGGTAGGTGGCTCGATCAGT ATCGTCGCATGGGGCGCGTTCAACACCTACTCTTTCGTGATTCTGGGCAACTTCCGCAAGAAGCATCCTCACTGC CACTCCATCGCCGATATGGCGGAAGTCGCCGGTGGTTTCTTCGCGAAAGAGCTTACCGGTATACTCTTCCTCATC GGCTACGTCCTTGTCACGGGCAGTGGTATTATCGGAGTTTCAACGGCCTTGAATGCGCTTTCGCACCACGCTGCG TGCACTGTCTGGTGGTCTTTCATTGGAGCGGTTGTGATCATCGCGACAGCTTCGGTACGCAAACTCCAGCATGTG GGCTGGCTCACATATGCAGGATTCATTTCGATCTATGCCGCCGTTCTGATCGTTGTTATCGGAGTCACAACGCGC GACCGGCCGGCTGCCGCACCCCAGGAGGGCCCTTACGAGCTCGGCTACGTGGCAATCAACAACCCCGGATTTGCG GCTGGCATGGTCGCTTCCAGTACTATCTTCGTCTCTACGGCTGGTACCAGCGCCTTCATCCCGGTGATGTCGGAA ATGCGAAACCCGAAGGACTACAAGAAGGCCCTATACCTGTGCATGGTTGTGGTTAATGCGTCGTACCTTGCTTTC AGCTTGGTTGTGTATCGTTGGTGTGGACAATGGGTGGCTAGTCCGTCTTTGGGTAGCGCTGGACAGACGATCAAG ATGGTATCTTACGGTGTTGCGCTGTTAGGACTGGTCGTCAGTGCCACGATCTACTTGCATATCGCCGCCAAATAC ATATTTGTGCGTATCTTGGGTAACACGCGCCATCTGCAATCCAACACCGTCATTCATTGGGTTACTTGGATGAGC TGTACGGTCGGTCTCGGTGCTATTTCCTTCATCCTCAGCGAGACTATCCCTATCTTCAACTACCTGGTTGCCCTA ATTGGGTCCGTTTGCTTCGCGCCTCTGGCCATGTGCCTTCCCGGTTTCTTGTGGCTACACAGCAATGGTCATTAC CGAAAGGGCACACTGATGCAGAAGGTTATCTACCTGCTGCACTGGGGAATGGTGCTCCTCGGAATTTTCTTCCTT GTCGGCGCGACGTACGGTGTTATCATTCAGATCATCGATGCCTACGCAACGGGAATGATTGGCTCCACTTTCAGC TGCTTGGACAACTCCAGCTCGTCGTAG |
| Gene | >Pro_DTO377G3_2|g8594.t1 ATGACCGTCAAAGAGAAGACAAGCGTAAATGACGCGGAGCTGGGAAGCCCTGGGGACTCTACCGAGGAGTACGAG GTCTTCAAGAAAACCGAGGATGGCGTCAGCTTCCGCAGTGTTGGCTGGTTCAAGGCGTGCATTATCTTCGTGAAG GTCCTCTTTGCGACGGGTGTGCTGTCGCTGCCAGCTTCACTGTACTCCCTCGGTGCGGTAGGTGGCTCGATCAGT ATCGTCGCATGGGGCGCGTTCAACACCTACTCTTTCGTGATTCTGGGCAACTTCCGCAAGAAGCATCCTCACTGC CACTCCATCGCCGATATGGCGGAAGTCGCCGGTGGTTTCTTCGCGAAAGAGCTTACCGGTATACTCTTCCTCATC GGCTACGTCCTTGTCACGGGCAGTGGTATTATCGGAGTTTCAACGGCCTTGAATGCGCTTTCGCACCACGCTGCG TGCACTGTCTGGTGGTCTTTCATTGGAGCGGTTGTGATCATCGCGACAGCTTCGGTACGCAAACTCCAGCATGTG GGCTGGCTCACATATGCAGGATTCATTTCGATCTATGCCGCCGTTCTGATCGTTGTTATCGGAGTCACAACGCGC GACCGGCCGGCTGCCGCACCCCAGGAGGGCCCTTACGAGCTCGGCTACGTGGCAATCAACAACCCCGGATTTGCG GCTGGCATGGTCGCTTCCAGTACTATCTTCGTCTCTACGGCTGGTACCAGCGCCTTCATCCCGGTGATGTCGGAA ATGCGAAACCCGAAGGACTACAAGAAGGCCCTATACCTGTGCATGGTTGTGGTTAATGCGTCGTACCTTGCTTTC AGCTTGGTTGTGTATCGTTGGTGTGGACAATGGGTGGCTAGTCCGTCTTTGGGTGTATGTATCCTATCCTTTGCC TGATACCGGTTTCAGACAATCAGCTAATTTTTGATTTTTACAGAGCGCTGGACAGACGATCAAGATGGTATCTTA CGGTGTTGCGCTGTTAGGACTGGTCGTCAGTGCCACGATCTACTTGCATGTGAGTATATCCCTCGCAACTCACGC TTCCGGAACTGACTTCGCTACTTAGATCGCCGCCAAATACATATTTGTGCGTATCTTGGGTAACACGCGCCATCT GCAATCCAACACCGTCATTCATTGGGTTACTTGGATGAGCTGTACGGTCGGTCTCGGTGCTATTTCCTTCATCCT CAGCGAGACTATCCCTATCTTCAACTACCTGGTTGCCCTAATTGGGTCCGTTTGCTTCGCGCCTCTGGCCATGTG CCTTCCCGGTTTCTTGTGGCTACACAGCAATGGTCATTACCGAAAGGGCACACTGATGCAGAAGGTTATCTACCT GCTGCACTGGGGAATGGTGCTCCTCGGAATTTTCTTCCTTGTCGGCGCGACGTACGGTGTTATCATTCAGATCAT CGATGCCTACGCAACGGGAATGATTGGTATGTTCTGCTATACCCGCAACAGTGTAGAACTGCGACTGACTTTTTT TATTAGGCTCCACTTTCAGCTGCTTGGACAACTCCAGCTCGTCGTAG |