© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8592.t1 |
| Gene name | |
| Location | scaffold_35:4331..6242 |
| Strand | + |
| Gene length (bp) | 1911 |
| Transcript length (bp) | 1617 |
| Coding sequence length (bp) | 1617 |
| Protein length (aa) | 539 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.4E-24 | 83 | 461 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 172 | 194 | 22 |
| 2 | 204 | 226 | 22 |
| 3 | 239 | 261 | 22 |
| 4 | 354 | 376 | 22 |
| 5 | 383 | 400 | 17 |
| 6 | 410 | 432 | 22 |
| 7 | 445 | 464 | 19 |
| 8 | 479 | 498 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.13 | 0.0 | 0.37 |
| 5d_25C | Five days - 25 degrees Celsius | 0.13 | 0.0 | 0.35 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.16 | 0.0 | 0.42 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.27 | 0.0 | 0.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.01 | 0.0 | 0.10 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.31 | 0.0 | 0.74 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8592.t1 MSINGIKTAHISASSSDGSDEEWQKSGRNKGEGTFESREGHHFYRPIDSYEGLHRWDPNFQWTEQEEKKIVRKID ARVCTFACVTFFALQLDRGNISQALASTLLEDLGMTSNDYNLGQTVFLICFLLAEMPSQLLSKRIGPDRWIPIQI VAWSLVAACQAFLKGRGSYLACRALLGFLEGGFIPDTILFLSFFYKSSELPKRLTCFWISYTVAGIIGSFLAFGF LHIKDANGSGAWRYLFAYEGLITGVIGIIAAFWMPASPVQTKGGLRGKDGWFTEHEEKIMVNRVIRDDPSKGSMH NRQAVTPRRFWESLKDYHVWPIYALGLIWMIPSTPSQNYLTLQLRSQGFTTFQTNLLTIPAAVIAIITMIAITWV AERTNQRLLWGAAAEVWNLVLLIALELLPQKSMPWPRWAILTLLVGGPSIHPVVVALTSRNAGSVRTRTVASALY NMSVQVSNIAGANVYQAKDAPYYKKGNKVLIALAVASGFLFIFAKFYYDWRNSQNSAKWDAMTSEQREIYLRENP VLTNKRIDFRFAR* |
| Coding | >Pro_DTO377G3_2|g8592.t1 ATGTCGATAAATGGAATAAAAACAGCGCATATATCTGCTAGTAGTTCAGATGGCTCGGACGAAGAGTGGCAGAAG AGTGGACGTAACAAGGGAGAAGGTACATTTGAGTCCAGGGAGGGTCATCACTTCTACCGGCCGATTGACAGCTAT GAGGGACTGCATCGCTGGGATCCGAATTTTCAATGGACGGAACAGGAAGAGAAAAAGATTGTCAGGAAGATTGAT GCTCGTGTCTGCACGTTTGCCTGCGTGACCTTCTTTGCATTGCAGCTGGATCGAGGAAATATCAGCCAGGCACTA GCGAGTACGCTTCTGGAAGATCTTGGAATGACAAGCAACGATTATAACTTGGGTCAGACGGTTTTTCTGATCTGT TTCTTGTTGGCTGAGATGCCGTCACAGTTGCTCTCGAAGAGAATCGGCCCGGACCGTTGGATTCCTATTCAAATT GTTGCTTGGAGTTTGGTCGCGGCTTGCCAGGCCTTTTTGAAAGGGCGTGGCTCGTATTTGGCCTGTCGAGCTCTG CTAGGATTCCTAGAAGGCGGGTTTATACCTGATACGATTCTTTTTCTGTCTTTCTTCTACAAATCTAGTGAGCTT CCGAAAAGACTGACCTGTTTCTGGATATCCTATACCGTTGCCGGAATTATCGGCTCATTTCTAGCCTTTGGCTTC CTACACATCAAAGACGCCAACGGCAGCGGTGCCTGGAGATATTTATTCGCGTACGAGGGTCTTATAACTGGCGTG ATTGGAATCATCGCTGCATTCTGGATGCCGGCGTCACCTGTACAAACCAAGGGAGGATTACGCGGTAAGGACGGG TGGTTTACAGAGCACGAAGAGAAGATCATGGTAAACCGCGTGATTCGGGACGACCCTAGCAAGGGCAGTATGCAC AACCGACAAGCGGTCACCCCACGGCGCTTCTGGGAGTCGCTCAAGGATTACCACGTGTGGCCAATCTATGCTCTG GGTCTCATTTGGATGATACCCAGTACACCATCCCAAAATTACCTCACGCTACAACTGCGGTCCCAGGGGTTTACG ACGTTCCAGACCAACTTGTTGACAATTCCAGCAGCTGTCATTGCGATTATCACCATGATAGCAATTACCTGGGTT GCGGAGCGTACAAACCAGCGCCTTCTCTGGGGCGCAGCAGCCGAAGTCTGGAACCTGGTACTGCTCATTGCGCTG GAGTTGCTTCCTCAGAAAAGCATGCCGTGGCCTCGTTGGGCGATCCTTACGCTTCTTGTCGGTGGGCCGAGTATT CATCCTGTTGTGGTCGCGTTGACTTCACGGAATGCCGGATCTGTGCGGACTCGCACTGTTGCTTCTGCGTTGTAT AATATGTCTGTGCAAGTGAGCAACATTGCAGGTGCCAATGTGTACCAAGCAAAGGATGCGCCATACTACAAAAAA GGAAACAAAGTTCTTATTGCATTGGCTGTCGCCAGTGGGTTCCTTTTCATCTTCGCCAAGTTCTACTACGATTGG CGGAATAGTCAAAACTCTGCAAAATGGGATGCTATGACAAGCGAGCAAAGAGAGATTTACCTGCGTGAAAACCCG GTGTTGACTAACAAGAGAATTGACTTCCGGTTTGCTCGTTAG |
| Transcript | >Pro_DTO377G3_2|g8592.t1 ATGTCGATAAATGGAATAAAAACAGCGCATATATCTGCTAGTAGTTCAGATGGCTCGGACGAAGAGTGGCAGAAG AGTGGACGTAACAAGGGAGAAGGTACATTTGAGTCCAGGGAGGGTCATCACTTCTACCGGCCGATTGACAGCTAT GAGGGACTGCATCGCTGGGATCCGAATTTTCAATGGACGGAACAGGAAGAGAAAAAGATTGTCAGGAAGATTGAT GCTCGTGTCTGCACGTTTGCCTGCGTGACCTTCTTTGCATTGCAGCTGGATCGAGGAAATATCAGCCAGGCACTA GCGAGTACGCTTCTGGAAGATCTTGGAATGACAAGCAACGATTATAACTTGGGTCAGACGGTTTTTCTGATCTGT TTCTTGTTGGCTGAGATGCCGTCACAGTTGCTCTCGAAGAGAATCGGCCCGGACCGTTGGATTCCTATTCAAATT GTTGCTTGGAGTTTGGTCGCGGCTTGCCAGGCCTTTTTGAAAGGGCGTGGCTCGTATTTGGCCTGTCGAGCTCTG CTAGGATTCCTAGAAGGCGGGTTTATACCTGATACGATTCTTTTTCTGTCTTTCTTCTACAAATCTAGTGAGCTT CCGAAAAGACTGACCTGTTTCTGGATATCCTATACCGTTGCCGGAATTATCGGCTCATTTCTAGCCTTTGGCTTC CTACACATCAAAGACGCCAACGGCAGCGGTGCCTGGAGATATTTATTCGCGTACGAGGGTCTTATAACTGGCGTG ATTGGAATCATCGCTGCATTCTGGATGCCGGCGTCACCTGTACAAACCAAGGGAGGATTACGCGGTAAGGACGGG TGGTTTACAGAGCACGAAGAGAAGATCATGGTAAACCGCGTGATTCGGGACGACCCTAGCAAGGGCAGTATGCAC AACCGACAAGCGGTCACCCCACGGCGCTTCTGGGAGTCGCTCAAGGATTACCACGTGTGGCCAATCTATGCTCTG GGTCTCATTTGGATGATACCCAGTACACCATCCCAAAATTACCTCACGCTACAACTGCGGTCCCAGGGGTTTACG ACGTTCCAGACCAACTTGTTGACAATTCCAGCAGCTGTCATTGCGATTATCACCATGATAGCAATTACCTGGGTT GCGGAGCGTACAAACCAGCGCCTTCTCTGGGGCGCAGCAGCCGAAGTCTGGAACCTGGTACTGCTCATTGCGCTG GAGTTGCTTCCTCAGAAAAGCATGCCGTGGCCTCGTTGGGCGATCCTTACGCTTCTTGTCGGTGGGCCGAGTATT CATCCTGTTGTGGTCGCGTTGACTTCACGGAATGCCGGATCTGTGCGGACTCGCACTGTTGCTTCTGCGTTGTAT AATATGTCTGTGCAAGTGAGCAACATTGCAGGTGCCAATGTGTACCAAGCAAAGGATGCGCCATACTACAAAAAA GGAAACAAAGTTCTTATTGCATTGGCTGTCGCCAGTGGGTTCCTTTTCATCTTCGCCAAGTTCTACTACGATTGG CGGAATAGTCAAAACTCTGCAAAATGGGATGCTATGACAAGCGAGCAAAGAGAGATTTACCTGCGTGAAAACCCG GTGTTGACTAACAAGAGAATTGACTTCCGGTTTGCTCGTTAG |
| Gene | >Pro_DTO377G3_2|g8592.t1 ATGTCGATAAATGGAATAAAAACAGCGCATATATCTGCTAGTAGTTCAGATGGCTCGGACGAAGAGTGGCAGAAG AGTGGACGTAACAAGGGAGAAGGTACATTTGAGTCCAGGGAGGGTCATCACTTCTACCGGCCGATTGACAGCTAT GAGGGACTGCATCGCTGGGATCCGAATTTTCAATGGACGGAACAGGAAGAGAAAAAGATTGTCAGGAAGGTCGGT TAAATTCCATACCACTAATCAATTATCAAATGACTGAATTTGGACAGATTGATGCTCGTGTCTGCACGTTTGCCT GCGTGACCTTCTTTGCATTGCAGCTGGATCGAGGAAATATCAGCCAGGCACTAGCGAGTACGCTTCTGGAAGATC TTGGAATGACAAGCAACGATTATAACTTGGGTCAGACGGTTTTTCTGATCTGTTTCTTGTTGGCTGAGATGCCGT CACAGTTGCTCTCGAAGAGAATCGGCCCGGACCGTTGGATTCCTATTCAAATTGTTGCTTGGAGTTTGGTCGCGG CTTGCCAGGCCTTTTTGAAAGGGCGTGGCTCGTATTTGGCCTGTCGAGCTCTGCTAGGATTCCTAGAAGGCGGGT TGTGAGTAATTCTCCTTCACATAATCTTAACGTGGGTCTGACCGTGTTTTTAGTATACCTGATACGATTCTTTTT CTGTCTTTCTTCTACAAATCTAGTGAGCTTCCGAAAAGACTGACCTGTTTCTGGATATCCTATACCGTTGCCGGA ATTATCGGCTCATTTCTAGCCTTTGGCTTCCTACACATCAAAGACGCCAACGGCAGCGGTGCCTGGAGATATTTA TTCGCGTACGAGGGTCTTATAACTGGCGTGATTGGAATCATCGCTGCATTCTGGATGCCGGCGTCACCTGTACAA ACCAAGGGAGGATTACGCGGTAAGGACGGGTGGTTTACAGAGCACGAAGAGAAGATCATGGTAAACCGCGTGATT CGGGACGACCCTAGCAAGGGCAGTATGCACAACCGACAAGCGGTCACCCCACGGCGCTTCTGGGAGTCGCTCAAG GATTACCACGTGTGGCCAATCTATGCTCTGGGTCTCATTTGGATGATACCCAGTACACCATCCCAAAATTACCTC ACGCTACAACTGCGGTCCCAGGGGTTTACGACGTTCCAGACCAACTTGTTGACAATTCCAGCAGCTGTCATTGCG ATTATCACCATGATAGCAATTACCTGGGTTGCGGAGCGTACAAACCAGCGCCTTCTCTGGGGCGCAGCAGCCGAA GTCTGGAACCTGGTACTGCTCATTGCGCTGGAGTTGCTTCCTCAGAAAAGCATGCCGTGGCCTCGTTGGGCGATC CTTACGCTTCTTGTCGGTGGGCCGAGTATTCATCCTGTTGTGGTCGCGTTGACTTCACGGAATGCCGGATCTGTG CGGACTCGCACTGTTGCTTCTGCGTTGTATAATATGTCTGTGCAAGTGAGCAACATTGCAGGTGCCAATGTGAGT TCAATTCCTTGTTTTACTCTAGATATGGATAGACTATTTAGAATACTAACATTTATGAACAGGTGTACCAAGCAA AGGATGCGCCATACTACAAAAAAGGAAACAAAGTTCTTATTGCATTGGCTGTCGCCAGTGGGTTCCTTTTCATCT TCGCCAAGTTCTACTACGATTGGCGGAATAGGTACATATTCAGAACTTGTAAATATCAATATGGATCAGCTTTGC TAACTTATAACAGTCAAAACTCTGCAAAATGGGATGCTATGACAAGCGAGCAAAGAGAGATTTACCTGCGTGAAA ACCCGGTGTTGACTAACAAGAGGTACGTTGACTAGCGCTGCAGAATATAACTACTAGCAGTGCTAGGAACTGACT ATGGTGTATAGAATTGACTTCCGGTTTGCTCGTTAG |