© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8591.t1 |
| Gene name | |
| Location | scaffold_35:678..3347 |
| Strand | + |
| Gene length (bp) | 2669 |
| Transcript length (bp) | 2319 |
| Coding sequence length (bp) | 2319 |
| Protein length (aa) | 773 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03169 | OPT | OPT oligopeptide transporter protein | 1.0E-119 | 73 | 742 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035673 | oligopeptide transmembrane transporter activity | Yes |
| GO:1904680 | peptide transmembrane transporter activity | No |
| GO:0042887 | amide transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 73 | 95 | 22 |
| 2 | 102 | 124 | 22 |
| 3 | 194 | 216 | 22 |
| 4 | 334 | 356 | 22 |
| 5 | 406 | 428 | 22 |
| 6 | 461 | 480 | 19 |
| 7 | 490 | 512 | 22 |
| 8 | 572 | 594 | 22 |
| 9 | 640 | 659 | 19 |
| 10 | 721 | 743 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.0 | 0.0 | 0.0 |
| 5d_25C | Five days - 25 degrees Celsius | 0.0 | 0.0 | 0.0 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.0 | 0.0 | 0.0 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.0 | 0.0 | 0.0 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.0 | 0.0 | 0.0 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.0 | 0.0 | 0.0 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8591.t1 MPDPPPKGKGIAVSDPEPIDEKVVTALVKDEAQVNGNELFAENDRGSEDLVIVTGADVAAHLLPLRDDLDPTLTF RAAILGSGLAAFLAVMTQIYSFKPTQVNVSGVFLVLVSYFFGTTWARFLPRGDKFEARWRARGEQGRLPWWITVI KFVNPGPFGLKEHSICVITATAAGYVTDATTVFAAQKLFYNLPLSPATVILGIISIGLFGCGLCGFMRPFAVWDV EAVYWGTLPVVKSIQGLHWDTVENSKPLKYFWYAFTGMSLYEIFPAYIFPWLNSVSIPCLASQKATGKKGAILTN IFGGATSNEGLGLFSLSFDWQYIGSISTAIPLKLILHTTLGAGISAMIMIGIYYGNGWGSRSLPFMASNLLMANG TTYPVKEVFPGGLLDKSVIEKYGLPQITGAFAFGLFTANAAIGALILHCILFWGKGIWRVCQQAREGKHNDPHHT YMAKHYKDTPWWCFAGILVVSFVLGLVVVIKENITLPAWAYVVSLALGVFITPFSTILFARFGNGIATNNLSKML AGLMLPGRPVGNMYFAAWSHNIVMSSVSVSNDLKFGEYMKIPPRIMLWTQMYGIILGGFINYAILTSVISANRDL LAEGNGNSSWSGATMQAFNTKAASWALAPYLYKLGAKYEVIPIAVAVGAAAVIVHRVFYQFVPKIGRFDVSEVNL PQLIQYAGSYTSQTQTCTVLSGLLCGLFTQGYLRNYHPRIYKDYSYVIAGAFDAGSLLVIFILSFAVYGAGGPSH PFPTWWGNNQNGHLDWCPVSKK* |
| Coding | >Pro_DTO377G3_2|g8591.t1 ATGCCTGACCCACCTCCAAAGGGTAAGGGTATTGCAGTATCTGATCCAGAGCCGATCGATGAGAAAGTTGTCACG GCTCTGGTAAAGGATGAGGCCCAAGTCAATGGCAACGAGTTATTTGCTGAAAATGACCGTGGCTCTGAAGATCTT GTGATTGTCACTGGAGCTGATGTGGCTGCTCATCTTTTGCCTTTGCGCGATGACTTGGACCCTACTTTGACATTT CGCGCTGCTATCCTGGGATCCGGCCTCGCGGCCTTTCTGGCTGTCATGACCCAGATCTACAGTTTCAAACCAACC CAAGTCAATGTCTCAGGCGTTTTCCTTGTTCTTGTTTCCTACTTTTTCGGTACCACCTGGGCCAGATTCCTCCCC CGAGGTGACAAGTTTGAGGCGAGATGGAGGGCACGAGGTGAGCAGGGCAGACTGCCTTGGTGGATTACTGTCATC AAGTTTGTGAATCCTGGGCCTTTCGGTCTCAAGGAGCATTCGATCTGTGTGATCACTGCTACAGCAGCCGGGTAC GTCACGGATGCGACGACTGTATTCGCGGCACAAAAGTTGTTCTACAATCTTCCTTTGAGTCCCGCAACGGTCATT CTCGGCATTATCTCTATCGGCCTCTTTGGATGTGGCCTCTGTGGGTTCATGCGGCCTTTTGCTGTCTGGGATGTC GAGGCTGTCTACTGGGGTACGCTGCCTGTTGTGAAATCCATCCAAGGGCTTCACTGGGACACGGTCGAAAACTCC AAGCCACTGAAATACTTCTGGTATGCCTTCACGGGTATGTCTCTTTACGAGATATTTCCCGCATACATCTTTCCA TGGCTCAACTCCGTGTCTATTCCGTGTCTGGCTTCACAAAAAGCAACTGGTAAGAAGGGTGCCATACTCACCAAC ATTTTCGGTGGTGCCACTTCTAACGAAGGCCTCGGTCTCTTCTCTTTGTCCTTCGACTGGCAATATATCGGGTCA ATTTCAACTGCTATTCCTCTAAAGCTGATACTTCATACCACCCTGGGAGCTGGCATCAGCGCCATGATAATGATT GGCATCTATTACGGAAATGGCTGGGGCTCGAGATCACTGCCTTTTATGGCGAGTAACCTTCTTATGGCCAATGGA ACAACTTATCCCGTGAAAGAGGTGTTTCCTGGTGGCTTGCTCGACAAATCAGTCATTGAAAAATATGGATTGCCT CAGATCACCGGGGCCTTTGCATTTGGTCTGTTCACGGCCAATGCCGCAATTGGCGCCCTCATTCTCCACTGTATC CTTTTCTGGGGCAAGGGCATTTGGAGGGTATGTCAACAAGCAAGGGAAGGTAAGCATAATGACCCACACCACACC TACATGGCAAAGCACTATAAGGACACTCCGTGGTGGTGCTTCGCTGGCATTCTCGTCGTCAGCTTTGTCCTTGGC CTTGTAGTGGTGATCAAAGAGAATATCACTCTTCCAGCCTGGGCATACGTTGTCTCGCTAGCACTAGGAGTTTTC ATTACGCCTTTTAGCACTATCCTCTTCGCTCGCTTCGGCAACGGCATTGCCACTAACAACCTGTCGAAAATGCTG GCTGGGCTCATGCTTCCCGGACGCCCAGTCGGTAACATGTATTTCGCTGCTTGGTCGCACAATATTGTCATGTCT TCCGTCTCCGTGTCCAACGACCTAAAGTTCGGCGAATACATGAAAATACCCCCGAGGATCATGCTTTGGACCCAA ATGTATGGCATCATACTTGGCGGATTCATTAACTATGCTATCTTGACTTCCGTCATTTCAGCCAACAGGGACCTT CTTGCCGAGGGTAACGGAAACTCCTCCTGGAGTGGTGCGACCATGCAGGCTTTCAACACTAAGGCAGCCTCCTGG GCCTTGGCCCCTTACTTGTACAAGCTCGGTGCCAAGTATGAGGTGATTCCTATTGCCGTAGCCGTTGGTGCTGCT GCAGTAATTGTTCATCGGGTTTTCTATCAGTTCGTTCCCAAAATCGGACGGTTTGATGTTTCAGAAGTGAACCTA CCACAACTCATCCAGTATGCCGGTTCTTATACATCCCAGACACAAACCTGCACTGTTCTCAGTGGGCTACTCTGT GGCTTGTTTACCCAAGGCTACCTTCGGAACTACCACCCACGCATTTACAAAGATTACTCATACGTTATTGCTGGG GCCTTCGACGCCGGAAGTCTGTTGGTTATCTTCATTCTCTCTTTCGCCGTCTACGGAGCGGGTGGGCCATCCCAT CCATTCCCAACGTGGTGGGGAAACAACCAAAATGGACACCTTGACTGGTGTCCTGTTTCGAAGAAATGA |
| Transcript | >Pro_DTO377G3_2|g8591.t1 ATGCCTGACCCACCTCCAAAGGGTAAGGGTATTGCAGTATCTGATCCAGAGCCGATCGATGAGAAAGTTGTCACG GCTCTGGTAAAGGATGAGGCCCAAGTCAATGGCAACGAGTTATTTGCTGAAAATGACCGTGGCTCTGAAGATCTT GTGATTGTCACTGGAGCTGATGTGGCTGCTCATCTTTTGCCTTTGCGCGATGACTTGGACCCTACTTTGACATTT CGCGCTGCTATCCTGGGATCCGGCCTCGCGGCCTTTCTGGCTGTCATGACCCAGATCTACAGTTTCAAACCAACC CAAGTCAATGTCTCAGGCGTTTTCCTTGTTCTTGTTTCCTACTTTTTCGGTACCACCTGGGCCAGATTCCTCCCC CGAGGTGACAAGTTTGAGGCGAGATGGAGGGCACGAGGTGAGCAGGGCAGACTGCCTTGGTGGATTACTGTCATC AAGTTTGTGAATCCTGGGCCTTTCGGTCTCAAGGAGCATTCGATCTGTGTGATCACTGCTACAGCAGCCGGGTAC GTCACGGATGCGACGACTGTATTCGCGGCACAAAAGTTGTTCTACAATCTTCCTTTGAGTCCCGCAACGGTCATT CTCGGCATTATCTCTATCGGCCTCTTTGGATGTGGCCTCTGTGGGTTCATGCGGCCTTTTGCTGTCTGGGATGTC GAGGCTGTCTACTGGGGTACGCTGCCTGTTGTGAAATCCATCCAAGGGCTTCACTGGGACACGGTCGAAAACTCC AAGCCACTGAAATACTTCTGGTATGCCTTCACGGGTATGTCTCTTTACGAGATATTTCCCGCATACATCTTTCCA TGGCTCAACTCCGTGTCTATTCCGTGTCTGGCTTCACAAAAAGCAACTGGTAAGAAGGGTGCCATACTCACCAAC ATTTTCGGTGGTGCCACTTCTAACGAAGGCCTCGGTCTCTTCTCTTTGTCCTTCGACTGGCAATATATCGGGTCA ATTTCAACTGCTATTCCTCTAAAGCTGATACTTCATACCACCCTGGGAGCTGGCATCAGCGCCATGATAATGATT GGCATCTATTACGGAAATGGCTGGGGCTCGAGATCACTGCCTTTTATGGCGAGTAACCTTCTTATGGCCAATGGA ACAACTTATCCCGTGAAAGAGGTGTTTCCTGGTGGCTTGCTCGACAAATCAGTCATTGAAAAATATGGATTGCCT CAGATCACCGGGGCCTTTGCATTTGGTCTGTTCACGGCCAATGCCGCAATTGGCGCCCTCATTCTCCACTGTATC CTTTTCTGGGGCAAGGGCATTTGGAGGGTATGTCAACAAGCAAGGGAAGGTAAGCATAATGACCCACACCACACC TACATGGCAAAGCACTATAAGGACACTCCGTGGTGGTGCTTCGCTGGCATTCTCGTCGTCAGCTTTGTCCTTGGC CTTGTAGTGGTGATCAAAGAGAATATCACTCTTCCAGCCTGGGCATACGTTGTCTCGCTAGCACTAGGAGTTTTC ATTACGCCTTTTAGCACTATCCTCTTCGCTCGCTTCGGCAACGGCATTGCCACTAACAACCTGTCGAAAATGCTG GCTGGGCTCATGCTTCCCGGACGCCCAGTCGGTAACATGTATTTCGCTGCTTGGTCGCACAATATTGTCATGTCT TCCGTCTCCGTGTCCAACGACCTAAAGTTCGGCGAATACATGAAAATACCCCCGAGGATCATGCTTTGGACCCAA ATGTATGGCATCATACTTGGCGGATTCATTAACTATGCTATCTTGACTTCCGTCATTTCAGCCAACAGGGACCTT CTTGCCGAGGGTAACGGAAACTCCTCCTGGAGTGGTGCGACCATGCAGGCTTTCAACACTAAGGCAGCCTCCTGG GCCTTGGCCCCTTACTTGTACAAGCTCGGTGCCAAGTATGAGGTGATTCCTATTGCCGTAGCCGTTGGTGCTGCT GCAGTAATTGTTCATCGGGTTTTCTATCAGTTCGTTCCCAAAATCGGACGGTTTGATGTTTCAGAAGTGAACCTA CCACAACTCATCCAGTATGCCGGTTCTTATACATCCCAGACACAAACCTGCACTGTTCTCAGTGGGCTACTCTGT GGCTTGTTTACCCAAGGCTACCTTCGGAACTACCACCCACGCATTTACAAAGATTACTCATACGTTATTGCTGGG GCCTTCGACGCCGGAAGTCTGTTGGTTATCTTCATTCTCTCTTTCGCCGTCTACGGAGCGGGTGGGCCATCCCAT CCATTCCCAACGTGGTGGGGAAACAACCAAAATGGACACCTTGACTGGTGTCCTGTTTCGAAGAAATGA |
| Gene | >Pro_DTO377G3_2|g8591.t1 ATGCCTGACCCACCTCCAAAGGGTAAGGGTATTGCAGTATCTGATCCAGAGCCGATCGATGAGAAAGTTGTCACG GCTCTGGTAAAGGATGAGGCCCAAGTCAATGGCAACGAGTTATTTGCTGAAAATGACCGTGGCTCTGAAGATCTT GTGATTGTCACTGGAGCTGATGTGGCTGCTCATCTTTTGCCTTTGCGCGATGACTTGGACCCTACTTTGACATTT CGCGCTGCTATCCTGGGATCCGGCCTCGCGGCCTTTCTGGCTGTCATGACCCAGATCTACAGTGTAGGCGAACTC GCATATCATCTCATTCTTCATTCCCACAGCACTGCTAATGAATATACTTCTAGTTCAAACCAACCCAAGTCAATG TCTCAGGCGTTTTCCTTGTTCTTGTTTCCTACTTTTTCGGTACCACCTGGGCCAGATTCCTCCCCCGAGGTGACA AGTTTGAGGCGAGATGGAGGGCACGAGGTGAGCAGGGCAGACTGCCTTGGTGGATTACTGTCATCAAGTTTGTGA ATCCTGGGCCTTTCGGTCTCAAGGAGCATTCGATCTGTGTGATCACTGCTACAGCAGCCGGGTACGTCACGGATG CGACGACTGTATTCGCGGCACAAAAGTTGTTCTACAATCTTCCTTTGAGTCCCGCAACGGTCATTCTCGGCATTA TCTCTATCGGCCTCTTTGGATGTGGCCTCTGTGGGTTCATGCGGCCTTTTGCTGTCTGGGATGTCGAGGCTGTCT ACTGGGGTACGCTGCCTGTTGTGAAATCCATCCAAGGGCTTCACTGGGACACGGTCGAAAACTCCAAGCCACTGA AATACTTCTGGTATGCCTTCACGGGTATGTCTCTTTACGAGATATTTCCCGCATACATCTTTCCATGGCTCAACT CCGTGTCTATTCCGGTATGTATTCTATCTTTTAGCAACGTTACTTGCGCCGTACCTGACTAGACCCCGAATGTCT AGTGTCTGGCTTCACAAAAAGCAACTGGTAAGAAGGGTGCCATACTCACCAACATTTTCGGTGGTGCCACTTCTA ACGAAGGCCTCGGTCTCTTCTCTTTGTCCTTCGACTGGCAATATGTGAGTTGGGGTATTACGCCCCAGTGATACT TTATATTAACCAATGAGACTGGTCAATACAGATCGGGTCAATTTCAACTGCTATTCCTCTAAAGCTGATACTTCA TACCACCCTGGGAGCTGGCATCAGCGCCATGATAATGATTGGCATCTATTACGGAAATGGCTGGGGCTCGAGATC ACTGCCTTTTATGGCGAGTAACCTTCTTATGGCCAATGGAACAACTTATCCCGTGAAAGAGGTGTTTCCTGGTGG CTTGCTCGACAAATCAGTCATTGAAAAATATGGATTGCCTCAGATCACCGGGGCCTTTGCATTTGGTCTGTTCAC GGCCAATGCCGCAGTGAGTACAATACTTCTATCCCGAACCACTTGCTAAGCATTACCTAGATTGGCGCCCTCATT CTCCACTGTATCCTTTTCTGGGGCAAGGGCATTTGGAGGGTATGTCAACAAGCAAGGGAAGGTAAGCATAATGAC CCACACCACACCTACATGGCAAAGCACTATAAGGACACTCCGTGGTGGTGCTTCGCTGGCATTCTCGTCGTCAGC TTTGTCCTTGGCCTTGTAGTGGTGATCAAAGAGAATATCACTCTTCCAGCCTGGGCATACGTTGTCTCGCTAGCA CTAGGAGTTTTCATTACGCCTTTTGTGAGTATTCTCGAACACGAAATTTTACAATGCTAATATTATGATCCAGAG CACTATCCTCTTCGCTCGCTTCGGCAACGGCATTGCCACTAACAACCTGTCGAAAATGCTGGCTGGGCTCATGCT TCCCGGACGCCCAGTCGGTAACATGTATTTCGCTGCTTGGTCGCACAATATTGTCATGTCTTCCGTCTCCGTGTC CAACGACCTAAAGTTCGGCGAATACATGAAAATACCCCCGAGGATCATGCTTTGGACCCAAATGTATGGCATCAT ACTTGGCGGATTCATTAACTATGCTATCTTGACTTCCGTCATTTCAGCCAACAGGGACCTTCTTGCCGAGGGTAA CGGAAACTCCTCCTGGAGTGGTGCGACCATGCAGGCTTTCAACACTAAGGCAGCCTCCTGGGCCTTGGCCCCTTA CTTGTACAAGCTCGGTGCCAAGTATGAGGTGATTCCTATTGCCGTAGCCGTTGGTGCTGCTGCAGTAATTGTTCA TCGGGTTTTCTATCAGGTCAGCAAACCTCAAGCAGACCAAGATTGTTCAACTAGTTCATGCTGACACCATTTTAC GTTAGTTCGTTCCCAAAATCGGACGGTTTGATGTTTCAGAAGTGAACCTACCACAACTCATCCAGTATGCCGGTT CTTATACATCCCAGACACAAACCTGCACTGTTCTCAGTGGGCTACTCTGTGGCTTGTTTACCCAAGGCTACCTTC GGAACTACCACCCACGCATTTACAAAGATTACTCATACGTTATTGCTGGGGCCTTCGACGCCGGAAGTCTGTTGG TTATCTTCATTCTCTCTTTCGCCGTCTACGGAGCGGGTGGGCCATCCCATCCATTCCCAACGTGGTGGGGAAACA ACCAAAATGGACACCTTGACTGGTGTCCTGTTTCGAAGAAATGA |