© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g8590.t1 |
| Gene name | |
| Location | scaffold_34:239524..240055 |
| Strand | + |
| Gene length (bp) | 531 |
| Transcript length (bp) | 465 |
| Coding sequence length (bp) | 465 |
| Protein length (aa) | 155 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02466 | Tim17 | Tim17/Tim22/Tim23/Pmp24 family | 8.7E-32 | 13 | 120 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 87 | 106 | 19 |
| 3 | 111 | 130 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 62.44 | 28.32 | 96.56 |
| 5d_25C | Five days - 25 degrees Celsius | 57.22 | 25.50 | 88.95 |
| 7d_25C | Seven days - 25 degrees Celsius | 49.45 | 20.60 | 78.30 |
| 10d_25C | Ten days - 25 degrees Celsius | 32.75 | 11.59 | 53.91 |
| 7d_15C | Seven days - 15 degrees Celsius | 40.64 | 16.02 | 65.25 |
| 7d_30C | Seven days - 30 degrees Celsius | 59.18 | 26.29 | 92.06 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.840943 | no |
| 3d_25C | 7d_25C | 0.530808 | no |
| 3d_25C | 7d_15C | 0.192683 | no |
| 3d_25C | 7d_30C | 0.909441 | no |
| 3d_25C | 10d_25C | 0.048648 | yes |
| 5d_25C | 7d_25C | 0.731720 | no |
| 5d_25C | 7d_15C | 0.335990 | no |
| 5d_25C | 7d_30C | 0.947246 | no |
| 5d_25C | 10d_25C | 0.094678 | no |
| 7d_25C | 7d_15C | 0.639094 | no |
| 7d_25C | 7d_30C | 0.661034 | no |
| 7d_25C | 10d_25C | 0.265168 | no |
| 7d_15C | 7d_30C | 0.292842 | no |
| 7d_15C | 10d_25C | 0.626658 | no |
| 7d_30C | 10d_25C | 0.074116 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 8576 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8590.t1 MDHTRDPCPWVALSDFGGAFAMGAIGGAVWHGVKGFRNSPYGERRIGALSAIKARAPVLGGNFGCWGGLFSIYDC SIKGIRKKEDPYNAIIAGFFTGGSLAIRGGFKAARNSAIMCAVFLAVIEGVGIGFQRMMADNTKLELPPMPPSEQ KALA* |
| Coding | >Pro_DTO377G3_2|g8590.t1 ATGGATCACACACGCGATCCCTGTCCCTGGGTTGCCCTGAGCGATTTCGGAGGTGCCTTCGCCATGGGTGCCATC GGTGGTGCTGTCTGGCACGGTGTTAAGGGATTCCGCAATAGTCCGTACGGCGAGCGCCGGATAGGTGCGCTCTCA GCAATCAAAGCGCGCGCTCCCGTCCTCGGTGGTAACTTCGGCTGCTGGGGAGGTCTCTTCAGTATTTACGACTGT TCAATTAAGGGTATCCGCAAGAAGGAAGATCCCTATAATGCAATCATTGCTGGTTTCTTTACCGGTGGCTCCCTC GCCATCCGTGGTGGTTTCAAGGCCGCCCGAAACTCCGCTATTATGTGTGCCGTCTTCCTCGCTGTCATCGAGGGT GTCGGTATTGGTTTCCAGCGCATGATGGCCGATAACACAAAGCTCGAGCTTCCTCCCATGCCTCCGTCGGAGCAG AAGGCCCTCGCTTGA |
| Transcript | >Pro_DTO377G3_2|g8590.t1 ATGGATCACACACGCGATCCCTGTCCCTGGGTTGCCCTGAGCGATTTCGGAGGTGCCTTCGCCATGGGTGCCATC GGTGGTGCTGTCTGGCACGGTGTTAAGGGATTCCGCAATAGTCCGTACGGCGAGCGCCGGATAGGTGCGCTCTCA GCAATCAAAGCGCGCGCTCCCGTCCTCGGTGGTAACTTCGGCTGCTGGGGAGGTCTCTTCAGTATTTACGACTGT TCAATTAAGGGTATCCGCAAGAAGGAAGATCCCTATAATGCAATCATTGCTGGTTTCTTTACCGGTGGCTCCCTC GCCATCCGTGGTGGTTTCAAGGCCGCCCGAAACTCCGCTATTATGTGTGCCGTCTTCCTCGCTGTCATCGAGGGT GTCGGTATTGGTTTCCAGCGCATGATGGCCGATAACACAAAGCTCGAGCTTCCTCCCATGCCTCCGTCGGAGCAG AAGGCCCTCGCTTGA |
| Gene | >Pro_DTO377G3_2|g8590.t1 ATGGATCACACACGCGATCCCTGTCCCTGGGTTGCCCTGAGCGATTTCGGAGGTGCCTTCGCCATGGGTGCCATC GGTGGTGCTGTCTGGCACGGTGTTAAGGGATTCCGCAATAGTCCGTACGGCGAGCGCCGGATAGGTGCGCTCTCA GCAATCAAAGCGCGCGCTCCCGTCCTCGGTGGTAACTTCGGCTGCTGGGGAGGTCTCTTCAGTATTTACGACTGT TCAATTAAGGGTATCCGCAAGAAGGAAGATCCCTATAATGCAATCATTGCTGGTTTCTTTACCGGTGGCTCCCTC GCCATCCGTGGTGGTTTCAAGGCCGCCCGAAACTCCGCTATTATGTGTGCCGTCTTCCTCGCTGTCATCGAGGGT GTCGGTATTGGTTTCCAGCGCATGATGGCCGATAACACAAAGCTCGAGGTATGTGGAATCTTATCGCCTTCGAGT GTGCAATTAGACGTGTCTGCTAACCATGAAAATTATTAGCTTCCTCCCATGCCTCCGTCGGAGCAGAAGGCCCTC GCTTGA |