© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8588.t1 |
| Gene name | |
| Location | scaffold_34:233683..234587 |
| Strand | + |
| Gene length (bp) | 904 |
| Transcript length (bp) | 837 |
| Coding sequence length (bp) | 837 |
| Protein length (aa) | 279 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 24 | 17 |
| 2 | 37 | 59 | 22 |
| 3 | 80 | 102 | 22 |
| 4 | 117 | 139 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.33 | 0.0 | 0.86 |
| 5d_25C | Five days - 25 degrees Celsius | 0.49 | 0.0 | 1.22 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.44 | 0.0 | 1.16 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.53 | 0.0 | 1.26 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.60 | 0.0 | 1.47 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.97 | 0.0 | 2.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 1.000000 | no |
| 3d_25C | 7d_15C | 1.000000 | no |
| 3d_25C | 7d_30C | 0.220632 | no |
| 3d_25C | 10d_25C | 1.000000 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.465505 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 0.430335 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.628715 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.497305 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8588.t1 MIIVCQILYAIGLALVKTSMMILYHKLFGTKASMRIAIYVTGTIVWAWGLSIILESFLICHPVAFNWNPTLPKGG CGNRNAAFVVAGVLNMVTDLMVMLLPIPYIWKLQLPVGRKIGLSVAFSIGLFVSAISMVRVDSLMRIDFNDLTYT LPIPLMWSIIEQQLALVAANLPLLRSVFSAVLPGSWLGSSARRTGTPSGEPSAKKRSAQEYSLTRMDAGTNRSEV TADSHKHANHNSQTRWSDDDEQSDTELAANAMPPDGIQIWKAFRVDSTRENVI* |
| Coding | >Pro_DTO377G3_2|g8588.t1 ATGATTATCGTCTGCCAGATTCTCTACGCAATTGGCCTCGCGCTTGTCAAAACATCAATGATGATTCTCTATCAC AAGCTCTTTGGCACCAAAGCCAGCATGCGGATTGCCATTTATGTCACCGGTACTATCGTGTGGGCGTGGGGACTG AGTATCATCCTCGAATCCTTTCTTATTTGTCACCCCGTCGCCTTTAATTGGAACCCGACGCTACCTAAAGGCGGA TGTGGAAATCGTAATGCAGCCTTTGTGGTAGCCGGAGTACTCAACATGGTGACCGATCTCATGGTCATGTTACTT CCAATCCCATATATTTGGAAGCTCCAGCTACCCGTGGGCCGGAAGATTGGTTTATCGGTAGCATTTTCCATAGGA CTGTTTGTCAGCGCAATCAGTATGGTCCGCGTTGACAGTCTCATGCGCATCGATTTCAACGATCTCACATATACC CTTCCCATTCCGTTAATGTGGAGTATCATCGAACAGCAACTCGCCCTCGTCGCGGCCAACCTGCCTCTTCTCCGT AGCGTGTTCTCCGCCGTGCTTCCTGGTAGTTGGCTGGGCTCATCAGCTCGCAGGACTGGGACACCATCGGGGGAG CCCAGTGCGAAGAAGCGCTCGGCGCAGGAATATTCTCTCACGCGCATGGATGCTGGTACTAATCGAAGTGAGGTC ACGGCAGACAGCCACAAACATGCGAATCACAATTCCCAGACGAGGTGGAGTGACGATGATGAGCAATCGGATACA GAGTTGGCTGCGAATGCGATGCCACCTGATGGGATCCAGATATGGAAGGCTTTTCGAGTTGACTCGACCAGAGAG AATGTTATTTGA |
| Transcript | >Pro_DTO377G3_2|g8588.t1 ATGATTATCGTCTGCCAGATTCTCTACGCAATTGGCCTCGCGCTTGTCAAAACATCAATGATGATTCTCTATCAC AAGCTCTTTGGCACCAAAGCCAGCATGCGGATTGCCATTTATGTCACCGGTACTATCGTGTGGGCGTGGGGACTG AGTATCATCCTCGAATCCTTTCTTATTTGTCACCCCGTCGCCTTTAATTGGAACCCGACGCTACCTAAAGGCGGA TGTGGAAATCGTAATGCAGCCTTTGTGGTAGCCGGAGTACTCAACATGGTGACCGATCTCATGGTCATGTTACTT CCAATCCCATATATTTGGAAGCTCCAGCTACCCGTGGGCCGGAAGATTGGTTTATCGGTAGCATTTTCCATAGGA CTGTTTGTCAGCGCAATCAGTATGGTCCGCGTTGACAGTCTCATGCGCATCGATTTCAACGATCTCACATATACC CTTCCCATTCCGTTAATGTGGAGTATCATCGAACAGCAACTCGCCCTCGTCGCGGCCAACCTGCCTCTTCTCCGT AGCGTGTTCTCCGCCGTGCTTCCTGGTAGTTGGCTGGGCTCATCAGCTCGCAGGACTGGGACACCATCGGGGGAG CCCAGTGCGAAGAAGCGCTCGGCGCAGGAATATTCTCTCACGCGCATGGATGCTGGTACTAATCGAAGTGAGGTC ACGGCAGACAGCCACAAACATGCGAATCACAATTCCCAGACGAGGTGGAGTGACGATGATGAGCAATCGGATACA GAGTTGGCTGCGAATGCGATGCCACCTGATGGGATCCAGATATGGAAGGCTTTTCGAGTTGACTCGACCAGAGAG AATGTTATTTGA |
| Gene | >Pro_DTO377G3_2|g8588.t1 ATGATTATCGTCTGCCAGATTCTCTACGCAATTGGCCTCGCGCTTGTCAAAACATCAATGATGATTCTCTATCAC AAGCTCTTTGGCACCAAAGCCAGCATGCGGATTGCCATTTATGTCACCGGTACTATCGTGTGGGCGTGGGGACTG AGTATCATCCTCGAATCCTTTCTTATTTGTCACCCCGTCGCCTTTAATTGGAACCCGACGCTACCTAAAGGCGGA TGTGGAAATCGTAATGCAGCCTTTGTGGTAGCCGGAGTACTCAACATGGTGACCGATCTCATGGTCATGTTACTT CCAATCCCATATATTTGGAAGCTCCAGCTACCCGTGGGCCGGAAGATTGGTTTATCGGTAGCATTTTCCATAGGA CTGTTGTAAGTGGATCCGCGACTGTGCTCTGATCTTGATTGCACGTTCAATGGCTAACCTTTTGAACCACAGTGT CAGCGCAATCAGTATGGTCCGCGTTGACAGTCTCATGCGCATCGATTTCAACGATCTCACATATACCCTTCCCAT TCCGTTAATGTGGAGTATCATCGAACAGCAACTCGCCCTCGTCGCGGCCAACCTGCCTCTTCTCCGTAGCGTGTT CTCCGCCGTGCTTCCTGGTAGTTGGCTGGGCTCATCAGCTCGCAGGACTGGGACACCATCGGGGGAGCCCAGTGC GAAGAAGCGCTCGGCGCAGGAATATTCTCTCACGCGCATGGATGCTGGTACTAATCGAAGTGAGGTCACGGCAGA CAGCCACAAACATGCGAATCACAATTCCCAGACGAGGTGGAGTGACGATGATGAGCAATCGGATACAGAGTTGGC TGCGAATGCGATGCCACCTGATGGGATCCAGATATGGAAGGCTTTTCGAGTTGACTCGACCAGAGAGAATGTTAT TTGA |