© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g8586.t1 |
| Gene name | |
| Location | scaffold_34:227977..229998 |
| Strand | - |
| Gene length (bp) | 2021 |
| Transcript length (bp) | 1713 |
| Coding sequence length (bp) | 1713 |
| Protein length (aa) | 571 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00809 | Pterin_bind | Pterin binding enzyme | 2.2E-81 | 299 | 551 |
| PF01288 | HPPK | 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) | 1.9E-34 | 119 | 246 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0009396 | folic acid-containing compound biosynthetic process | Yes |
| GO:0042558 | pteridine-containing compound metabolic process | Yes |
| GO:0003848 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006760 | folic acid-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0016740 | transferase activity | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0042559 | pteridine-containing compound biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0009058 | biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0006575 | cellular modified amino acid metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0016778 | diphosphotransferase activity | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0042398 | cellular modified amino acid biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 67.86 | 41.50 | 94.22 |
| 5d_25C | Five days - 25 degrees Celsius | 145.32 | 86.63 | 204.02 |
| 7d_25C | Seven days - 25 degrees Celsius | 195.80 | 115.18 | 276.42 |
| 10d_25C | Ten days - 25 degrees Celsius | 306.90 | 174.37 | 439.43 |
| 7d_15C | Seven days - 15 degrees Celsius | 140.65 | 82.63 | 198.68 |
| 7d_30C | Seven days - 30 degrees Celsius | 92.31 | 55.77 | 128.85 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.156245 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.207590 | no |
| 5d_25C | 7d_15C | 0.924821 | no |
| 5d_25C | 7d_30C | 0.033253 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.157727 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.047134 | yes |
| 7d_15C | 7d_30C | 0.050710 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8586.t1 MNARVIQRAPPLASLLPHTRQIGRSLRLSPLAAGPARSGHRPLHTGNRKPSPQSLGSTSQSQSVYTAQLASGILT RNGLSRRSITSLHLTPPVRNLSTAQAVDSRMNLKFPSPDIHRAFIALGSNVGDRVEMIEQACLEMDRVGIKVKRT SSLFETAPMYVLDQDTFINGVCEVETTLAPLDLLDTIQSIEIAMGRKKLIDKGPRSIDLDILLYDEEIVCHERLN IPHNLMLERDFVLRPLSQLIPNEYPPLPGKDTQTYSTHLKALSPPDPTPMSTTPISPLFPSLRATDPKRSTHVMA ILNLTPDSFSDGGKHSPTDLNYITETVRNFIASGATIIDIGGESTRPGSKPVGAAEEIARVVPAIKHIRTAIPEA ANIAISIDTYRASVAEAACAAGADIINDISAGLLDPEMLPTVARIGKSVILMHMRGTPQTMTTLHEYPTGVIPEV AAELGARIAAAEDAGIRRWRIILDPGLGFAKIQEHDLEILRDLPRLRAMPGLECFPWLMGPSRKRFIGHLTGVKT PRERVWGTAATVSASVAGGADIVRVHDVHEMWQVAKVADAIYRVD* |
| Coding | >Pro_DTO377G3_2|g8586.t1 ATGAATGCCAGGGTAATCCAGAGAGCCCCTCCATTGGCATCTCTTCTTCCTCATACACGGCAAATTGGGAGGTCG CTAAGACTTTCGCCATTGGCTGCAGGTCCGGCCAGGAGTGGTCATAGACCGTTGCATACAGGTAACAGAAAACCC TCACCGCAGAGCCTGGGGTCAACTTCTCAATCTCAATCGGTATATACAGCCCAATTGGCATCGGGAATTCTCACT AGAAATGGTCTATCACGACGTTCAATAACGTCGTTGCATTTGACCCCGCCTGTGAGGAATTTATCCACTGCGCAA GCAGTTGACTCCAGGATGAATTTGAAGTTTCCCAGTCCAGACATCCACCGGGCTTTTATTGCCCTAGGAAGCAAT GTCGGAGACCGAGTAGAAATGATTGAGCAGGCTTGTCTTGAAATGGACCGAGTTGGTATCAAAGTGAAAAGGACA AGTTCATTGTTCGAAACCGCACCGATGTATGTGCTTGATCAAGATACCTTCATCAATGGTGTATGCGAGGTGGAA ACAACCCTTGCACCTTTGGATCTTTTGGACACTATTCAATCTATTGAGATTGCGATGGGCAGAAAGAAGCTCATC GACAAAGGTCCACGCTCTATTGATCTGGATATCCTACTATATGATGAGGAGATCGTCTGTCATGAGCGTCTCAAC ATCCCACACAATCTGATGCTTGAGCGAGACTTTGTATTGCGACCTCTTAGCCAATTAATCCCAAATGAATACCCT CCACTACCAGGAAAGGACACGCAAACATACAGCACCCATCTGAAGGCTCTCTCGCCGCCAGATCCAACACCAATG TCGACAACCCCAATCTCACCACTATTCCCATCCTTGCGCGCAACGGATCCCAAGCGCAGCACCCACGTCATGGCA ATCCTCAATCTAACGCCAGACTCCTTCTCCGACGGCGGCAAGCACTCCCCAACCGACCTAAACTACATAACAGAA ACAGTACGCAACTTCATCGCCTCCGGCGCAACAATAATCGACATCGGCGGTGAGAGCACCCGCCCAGGCTCAAAA CCAGTCGGCGCCGCCGAAGAGATCGCCCGCGTAGTGCCAGCAATCAAGCACATCCGAACCGCCATTCCAGAAGCC GCCAACATCGCCATCAGCATCGACACCTACCGCGCCAGCGTAGCAGAAGCCGCCTGCGCCGCCGGCGCAGACATC ATCAACGACATTTCAGCCGGCCTCCTCGACCCAGAAATGCTACCAACAGTAGCGCGGATCGGTAAGTCCGTGATC CTGATGCACATGCGCGGTACGCCGCAAACGATGACGACCCTACACGAGTACCCGACCGGCGTTATCCCGGAAGTA GCTGCTGAGCTGGGCGCGCGCATTGCGGCTGCCGAAGACGCGGGGATCCGGCGCTGGCGCATCATCCTCGATCCG GGTCTTGGCTTTGCGAAGATTCAGGAGCATGATCTGGAGATATTGCGGGACCTGCCTAGGCTGCGGGCGATGCCG GGGCTCGAGTGCTTCCCTTGGTTGATGGGGCCTAGTCGGAAGAGATTTATTGGCCATCTTACTGGGGTCAAGACG CCGCGGGAGCGCGTTTGGGGTACCGCTGCTACTGTCTCTGCTAGCGTGGCTGGTGGCGCGGACATTGTTCGTGTT CATGATGTCCATGAGATGTGGCAGGTGGCGAAGGTTGCCGATGCGATTTATCGCGTTGATTGA |
| Transcript | >Pro_DTO377G3_2|g8586.t1 ATGAATGCCAGGGTAATCCAGAGAGCCCCTCCATTGGCATCTCTTCTTCCTCATACACGGCAAATTGGGAGGTCG CTAAGACTTTCGCCATTGGCTGCAGGTCCGGCCAGGAGTGGTCATAGACCGTTGCATACAGGTAACAGAAAACCC TCACCGCAGAGCCTGGGGTCAACTTCTCAATCTCAATCGGTATATACAGCCCAATTGGCATCGGGAATTCTCACT AGAAATGGTCTATCACGACGTTCAATAACGTCGTTGCATTTGACCCCGCCTGTGAGGAATTTATCCACTGCGCAA GCAGTTGACTCCAGGATGAATTTGAAGTTTCCCAGTCCAGACATCCACCGGGCTTTTATTGCCCTAGGAAGCAAT GTCGGAGACCGAGTAGAAATGATTGAGCAGGCTTGTCTTGAAATGGACCGAGTTGGTATCAAAGTGAAAAGGACA AGTTCATTGTTCGAAACCGCACCGATGTATGTGCTTGATCAAGATACCTTCATCAATGGTGTATGCGAGGTGGAA ACAACCCTTGCACCTTTGGATCTTTTGGACACTATTCAATCTATTGAGATTGCGATGGGCAGAAAGAAGCTCATC GACAAAGGTCCACGCTCTATTGATCTGGATATCCTACTATATGATGAGGAGATCGTCTGTCATGAGCGTCTCAAC ATCCCACACAATCTGATGCTTGAGCGAGACTTTGTATTGCGACCTCTTAGCCAATTAATCCCAAATGAATACCCT CCACTACCAGGAAAGGACACGCAAACATACAGCACCCATCTGAAGGCTCTCTCGCCGCCAGATCCAACACCAATG TCGACAACCCCAATCTCACCACTATTCCCATCCTTGCGCGCAACGGATCCCAAGCGCAGCACCCACGTCATGGCA ATCCTCAATCTAACGCCAGACTCCTTCTCCGACGGCGGCAAGCACTCCCCAACCGACCTAAACTACATAACAGAA ACAGTACGCAACTTCATCGCCTCCGGCGCAACAATAATCGACATCGGCGGTGAGAGCACCCGCCCAGGCTCAAAA CCAGTCGGCGCCGCCGAAGAGATCGCCCGCGTAGTGCCAGCAATCAAGCACATCCGAACCGCCATTCCAGAAGCC GCCAACATCGCCATCAGCATCGACACCTACCGCGCCAGCGTAGCAGAAGCCGCCTGCGCCGCCGGCGCAGACATC ATCAACGACATTTCAGCCGGCCTCCTCGACCCAGAAATGCTACCAACAGTAGCGCGGATCGGTAAGTCCGTGATC CTGATGCACATGCGCGGTACGCCGCAAACGATGACGACCCTACACGAGTACCCGACCGGCGTTATCCCGGAAGTA GCTGCTGAGCTGGGCGCGCGCATTGCGGCTGCCGAAGACGCGGGGATCCGGCGCTGGCGCATCATCCTCGATCCG GGTCTTGGCTTTGCGAAGATTCAGGAGCATGATCTGGAGATATTGCGGGACCTGCCTAGGCTGCGGGCGATGCCG GGGCTCGAGTGCTTCCCTTGGTTGATGGGGCCTAGTCGGAAGAGATTTATTGGCCATCTTACTGGGGTCAAGACG CCGCGGGAGCGCGTTTGGGGTACCGCTGCTACTGTCTCTGCTAGCGTGGCTGGTGGCGCGGACATTGTTCGTGTT CATGATGTCCATGAGATGTGGCAGGTGGCGAAGGTTGCCGATGCGATTTATCGCGTTGATTGA |
| Gene | >Pro_DTO377G3_2|g8586.t1 ATGAATGCCAGGGTAATCCAGAGAGCCCCTCCATTGGCATCTCTTCTTCCTCATACACGGCAAATTGGGAGGTCG CTAAGACTTTCGCCATTGGCTGCAGGTCCGGCCAGGAGTGGTCATAGACCGTTGCATACAGGGTAAAGCCCCAAA TAACCAATTAACTGTGGCGAATCTGACGACATCTTATAGTAACAGAAAACCCTCACCGCAGAGCCTGGGTATGTG GCTAGCTACTTCTTAAAAGCCCCTCGCACGCTTATCGGCGTATCGTCCCAATGGGGAAATATGCCTGTCCCCGCA AATTTTTTTTATTTGCCATGTCTCTACTTTATTGCAACACTAATATTCAATAGGGTCAACTTCTCAATCTCAATC GGTATATACAGCCCAATTGGCATCGGGAATTCTCACTAGAAATGGTCTATCACGACGTTCAATAACGTCGTTGCA TTTGACCCCGCCTGTGAGGAATTTATCCACTGCGCAAGCAGTTGACTCCAGGATGAATTTGAAGTTTCCCAGTCC AGACATCCACCGGGCTTTTATTGCCCTAGGAAGCAATGTCGGAGACCGAGTAGAAATGATTGAGCAGGCTTGTCT TGAAATGGACCGAGTTGGTATCAAAGTGAAAAGGACAAGTTCATTGTTCGAAACCGCACCGATGTATGTGCTTGA TCAAGATACCTTCATCAATGGTGTATGCGAGGTATGTTAGCGAAAGTAATGTCCAAACTGGTAGCCCATTGTTAA TTTCTATCAGGTGGAAACAACCCTTGCACCTTTGGATCTTTTGGACACTATTCAATCTATTGAGATTGCGATGGG CAGAAAGAAGCTCATCGACAAAGGTCCACGCTCTATTGATCTGGATATCCTACTATATGATGAGGAGATCGTCTG TCATGAGCGTCTCAACATCCCACACAATCTGATGCTTGAGCGAGACTTTGTATTGCGACCTCTTAGCCAGTACGC TCCCAATGGCTTTATATATGCTATACCGACACAATAAGCAAAACTAACCATCTGAATTTAGATTAATCCCAAATG AATACCCTCCACTACCAGGAAAGGACACGCAAACATACAGCACCCATCTGAAGGCTCTCTCGCCGCCAGATCCAA CACCAATGTCGACAACCCCAATCTCACCACTATTCCCATCCTTGCGCGCAACGGATCCCAAGCGCAGCACCCACG TCATGGCAATCCTCAATCTAACGCCAGACTCCTTCTCCGACGGCGGCAAGCACTCCCCAACCGACCTAAACTACA TAACAGAAACAGTACGCAACTTCATCGCCTCCGGCGCAACAATAATCGACATCGGCGGTGAGAGCACCCGCCCAG GCTCAAAACCAGTCGGCGCCGCCGAAGAGATCGCCCGCGTAGTGCCAGCAATCAAGCACATCCGAACCGCCATTC CAGAAGCCGCCAACATCGCCATCAGCATCGACACCTACCGCGCCAGCGTAGCAGAAGCCGCCTGCGCCGCCGGCG CAGACATCATCAACGACATTTCAGCCGGCCTCCTCGACCCAGAAATGCTACCAACAGTAGCGCGGATCGGTAAGT CCGTGATCCTGATGCACATGCGCGGTACGCCGCAAACGATGACGACCCTACACGAGTACCCGACCGGCGTTATCC CGGAAGTAGCTGCTGAGCTGGGCGCGCGCATTGCGGCTGCCGAAGACGCGGGGATCCGGCGCTGGCGCATCATCC TCGATCCGGGTCTTGGCTTTGCGAAGATTCAGGAGCATGATCTGGAGATATTGCGGGACCTGCCTAGGCTGCGGG CGATGCCGGGGCTCGAGTGCTTCCCTTGGTTGATGGGGCCTAGTCGGAAGAGATTTATTGGCCATCTTACTGGGG TCAAGACGCCGCGGGAGCGCGTTTGGGGTACCGCTGCTACTGTCTCTGCTAGCGTGGCTGGTGGCGCGGACATTG TTCGTGTTCATGATGTCCATGAGATGTGGCAGGTGGCGAAGGTTGCCGATGCGATTTATCGCGTTGATTGA |