© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g8582.t1 |
| Gene name | |
| Location | scaffold_34:219350..221856 |
| Strand | + |
| Gene length (bp) | 2506 |
| Transcript length (bp) | 2256 |
| Coding sequence length (bp) | 2256 |
| Protein length (aa) | 752 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01480 | PWI | PWI domain | 9.8E-16 | 677 | 745 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006397 | mRNA processing | Yes |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 29.05 | 17.22 | 40.88 |
| 5d_25C | Five days - 25 degrees Celsius | 24.57 | 14.31 | 34.82 |
| 7d_25C | Seven days - 25 degrees Celsius | 24.46 | 14.22 | 34.69 |
| 10d_25C | Ten days - 25 degrees Celsius | 21.40 | 12.22 | 30.59 |
| 7d_15C | Seven days - 15 degrees Celsius | 30.68 | 18.28 | 43.08 |
| 7d_30C | Seven days - 30 degrees Celsius | 24.19 | 14.08 | 34.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.540622 | no |
| 3d_25C | 7d_25C | 0.528194 | no |
| 3d_25C | 7d_15C | 0.869721 | no |
| 3d_25C | 7d_30C | 0.498338 | no |
| 3d_25C | 10d_25C | 0.201071 | no |
| 5d_25C | 7d_25C | 0.990318 | no |
| 5d_25C | 7d_15C | 0.379102 | no |
| 5d_25C | 7d_30C | 0.967179 | no |
| 5d_25C | 10d_25C | 0.641176 | no |
| 7d_25C | 7d_15C | 0.371873 | no |
| 7d_25C | 7d_30C | 0.976285 | no |
| 7d_25C | 10d_25C | 0.660656 | no |
| 7d_15C | 7d_30C | 0.349546 | no |
| 7d_15C | 10d_25C | 0.119453 | no |
| 7d_30C | 10d_25C | 0.688950 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 8567 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8582.t1 MYNPYQAPGLYGRAPDYGAYGAPPGMAPPPGMAAPGTAAPLGMQQANIQPGRPGSFPPNFQPPMNMPNINFSAPV IRLGTSGPNKPAAQENGRERGPDAPGRRGGLGSMGMDTQRHHGRETMMQLQPPTRDEVVRTIFIGGITEGAGGDD GIERILRSTGILRRWIRATDADDKPCRFGFAEYDDPESLEIAVETLKDVEVPVKIQVPLAEGDEEQKVEKSKLLV VVDEGTLTYLEQFESSRAEQDPEERQARFTAARNNLNKVLTSLFHPTAPLTKEEISALDREGDTEMKDAEPAKDG EVVTIPITIEDELADIPPEMRANVAKEISAFRERSTRRDIERMKREEEIESMERARNSGSRINRLVSPPASAPSG PAAGINGIPLGPRDRNVMNAPSGPRAFGVQIPKDYQKGVAFVNADALNGDDNSDASDEEIERRRQDRLKAEQEKE FSDLERRWLGRERSRTAALEREKKREDEEDGKLQAAHDEMEARLNAWNDDVEDTRKAVDYYADRGTWLRTRAAFR SREAHVDDADRAAEDRERVQSAKQQEQARGMADDFLARQAKELETRPQEAPREPQRFKLSLGAAAQKAQAATSRR AVADVEGLLEDEEEPETTTRRPLIPIKFDSAAEAAGLTDEERAQAARQLAAEIPAEKEGLWNWAIKWEFVDDAII TDQLKPFVEKKIVEYLGVQEQMLVDVVEEHVRKHGSPQELVEQLAEALDEEAEVLVRKLWRMIIFCSESEKRGLS L* |
| Coding | >Pro_DTO377G3_2|g8582.t1 ATGTACAATCCTTACCAAGCTCCGGGTCTTTATGGACGCGCGCCTGACTACGGTGCCTATGGTGCGCCTCCGGGC ATGGCCCCTCCTCCAGGAATGGCTGCTCCAGGCACTGCTGCCCCCCTCGGCATGCAGCAAGCAAATATCCAGCCT GGTCGTCCAGGAAGCTTCCCGCCCAACTTCCAACCGCCTATGAATATGCCAAACATCAATTTCTCTGCGCCGGTG ATTCGCTTGGGTACTTCGGGCCCGAACAAGCCTGCAGCTCAGGAGAATGGTCGCGAACGGGGACCCGATGCTCCT GGGCGCCGCGGTGGTCTGGGGTCGATGGGAATGGATACCCAGCGCCATCATGGTCGCGAGACCATGATGCAGCTC CAGCCACCTACACGCGACGAGGTCGTGCGCACCATTTTTATCGGTGGGATTACAGAGGGCGCAGGCGGTGATGAT GGCATTGAGCGCATTCTACGATCTACTGGTATCTTGCGTCGCTGGATTCGCGCGACAGATGCTGATGACAAACCT TGCCGGTTTGGCTTTGCCGAGTATGATGACCCGGAGAGTCTTGAGATTGCGGTTGAAACCCTGAAGGACGTGGAA GTCCCGGTCAAGATACAGGTACCCCTCGCCGAAGGCGATGAGGAACAAAAAGTCGAAAAGAGCAAGCTTCTAGTC GTCGTCGACGAAGGTACCCTCACCTACCTAGAGCAATTCGAGTCTAGCCGAGCCGAACAAGACCCCGAGGAACGC CAGGCACGTTTCACCGCTGCGCGCAACAATCTGAACAAAGTCTTGACAAGCCTCTTCCATCCCACAGCCCCGCTG ACAAAGGAGGAGATATCGGCCCTTGATCGGGAAGGCGACACGGAAATGAAGGACGCCGAGCCTGCAAAGGATGGG GAAGTGGTCACTATTCCCATCACCATTGAAGATGAGCTGGCCGATATCCCCCCAGAAATGCGCGCCAATGTGGCC AAGGAGATTTCGGCTTTCCGTGAACGAAGCACCCGCCGCGACATCGAGCGTATGAAACGCGAGGAAGAGATCGAG TCAATGGAGCGTGCACGCAACTCTGGCTCTCGGATCAATCGACTTGTTTCGCCCCCGGCATCCGCTCCTAGTGGC CCTGCTGCCGGTATCAACGGTATTCCCTTGGGCCCACGGGATCGCAATGTGATGAACGCACCTTCTGGTCCGAGG GCATTCGGTGTGCAGATTCCTAAGGATTATCAGAAGGGAGTTGCTTTTGTCAATGCCGATGCCCTCAACGGTGAC GACAACTCGGATGCTAGCGACGAGGAAATTGAACGCCGCCGACAGGATCGGCTCAAGGCTGAACAAGAGAAGGAA TTCTCAGACCTGGAGCGCCGCTGGCTTGGCCGTGAACGCAGCCGAACCGCAGCCCTGGAGCGAGAGAAGAAGCGT GAGGATGAGGAAGACGGAAAGTTGCAAGCTGCGCACGATGAGATGGAAGCACGACTTAACGCCTGGAACGATGAT GTCGAGGACACCCGGAAGGCAGTCGATTACTACGCAGATCGCGGTACCTGGCTCCGGACCCGTGCAGCCTTCCGT TCTCGTGAGGCCCATGTTGACGATGCCGATCGCGCCGCTGAGGATCGCGAACGTGTGCAATCCGCCAAGCAGCAG GAGCAGGCTCGCGGCATGGCCGACGACTTCCTCGCTCGCCAGGCCAAGGAGCTCGAGACACGTCCCCAGGAGGCA CCGCGCGAACCCCAGCGCTTCAAGCTCTCTCTTGGAGCTGCCGCGCAGAAGGCCCAGGCCGCAACCAGCCGGCGC GCAGTGGCCGATGTGGAAGGTCTGCTGGAGGACGAGGAAGAGCCTGAGACAACAACCCGTCGGCCACTCATTCCG ATCAAATTCGACTCGGCGGCCGAAGCTGCAGGTCTCACTGACGAAGAACGTGCTCAGGCGGCCCGTCAACTCGCA GCAGAGATTCCGGCTGAGAAGGAAGGCCTGTGGAACTGGGCAATCAAGTGGGAATTTGTGGACGATGCTATCATC ACCGACCAACTCAAGCCTTTCGTTGAGAAGAAGATCGTCGAATATCTTGGTGTACAGGAGCAAATGCTTGTAGAT GTGGTGGAGGAACATGTGCGGAAGCATGGATCGCCCCAGGAGTTGGTGGAGCAGCTGGCAGAAGCATTGGACGAA GAGGCTGAAGTCCTCGTTCGCAAGCTTTGGCGCATGATCATTTTCTGTTCCGAGAGCGAGAAACGAGGCCTGTCC TTGTAG |
| Transcript | >Pro_DTO377G3_2|g8582.t1 ATGTACAATCCTTACCAAGCTCCGGGTCTTTATGGACGCGCGCCTGACTACGGTGCCTATGGTGCGCCTCCGGGC ATGGCCCCTCCTCCAGGAATGGCTGCTCCAGGCACTGCTGCCCCCCTCGGCATGCAGCAAGCAAATATCCAGCCT GGTCGTCCAGGAAGCTTCCCGCCCAACTTCCAACCGCCTATGAATATGCCAAACATCAATTTCTCTGCGCCGGTG ATTCGCTTGGGTACTTCGGGCCCGAACAAGCCTGCAGCTCAGGAGAATGGTCGCGAACGGGGACCCGATGCTCCT GGGCGCCGCGGTGGTCTGGGGTCGATGGGAATGGATACCCAGCGCCATCATGGTCGCGAGACCATGATGCAGCTC CAGCCACCTACACGCGACGAGGTCGTGCGCACCATTTTTATCGGTGGGATTACAGAGGGCGCAGGCGGTGATGAT GGCATTGAGCGCATTCTACGATCTACTGGTATCTTGCGTCGCTGGATTCGCGCGACAGATGCTGATGACAAACCT TGCCGGTTTGGCTTTGCCGAGTATGATGACCCGGAGAGTCTTGAGATTGCGGTTGAAACCCTGAAGGACGTGGAA GTCCCGGTCAAGATACAGGTACCCCTCGCCGAAGGCGATGAGGAACAAAAAGTCGAAAAGAGCAAGCTTCTAGTC GTCGTCGACGAAGGTACCCTCACCTACCTAGAGCAATTCGAGTCTAGCCGAGCCGAACAAGACCCCGAGGAACGC CAGGCACGTTTCACCGCTGCGCGCAACAATCTGAACAAAGTCTTGACAAGCCTCTTCCATCCCACAGCCCCGCTG ACAAAGGAGGAGATATCGGCCCTTGATCGGGAAGGCGACACGGAAATGAAGGACGCCGAGCCTGCAAAGGATGGG GAAGTGGTCACTATTCCCATCACCATTGAAGATGAGCTGGCCGATATCCCCCCAGAAATGCGCGCCAATGTGGCC AAGGAGATTTCGGCTTTCCGTGAACGAAGCACCCGCCGCGACATCGAGCGTATGAAACGCGAGGAAGAGATCGAG TCAATGGAGCGTGCACGCAACTCTGGCTCTCGGATCAATCGACTTGTTTCGCCCCCGGCATCCGCTCCTAGTGGC CCTGCTGCCGGTATCAACGGTATTCCCTTGGGCCCACGGGATCGCAATGTGATGAACGCACCTTCTGGTCCGAGG GCATTCGGTGTGCAGATTCCTAAGGATTATCAGAAGGGAGTTGCTTTTGTCAATGCCGATGCCCTCAACGGTGAC GACAACTCGGATGCTAGCGACGAGGAAATTGAACGCCGCCGACAGGATCGGCTCAAGGCTGAACAAGAGAAGGAA TTCTCAGACCTGGAGCGCCGCTGGCTTGGCCGTGAACGCAGCCGAACCGCAGCCCTGGAGCGAGAGAAGAAGCGT GAGGATGAGGAAGACGGAAAGTTGCAAGCTGCGCACGATGAGATGGAAGCACGACTTAACGCCTGGAACGATGAT GTCGAGGACACCCGGAAGGCAGTCGATTACTACGCAGATCGCGGTACCTGGCTCCGGACCCGTGCAGCCTTCCGT TCTCGTGAGGCCCATGTTGACGATGCCGATCGCGCCGCTGAGGATCGCGAACGTGTGCAATCCGCCAAGCAGCAG GAGCAGGCTCGCGGCATGGCCGACGACTTCCTCGCTCGCCAGGCCAAGGAGCTCGAGACACGTCCCCAGGAGGCA CCGCGCGAACCCCAGCGCTTCAAGCTCTCTCTTGGAGCTGCCGCGCAGAAGGCCCAGGCCGCAACCAGCCGGCGC GCAGTGGCCGATGTGGAAGGTCTGCTGGAGGACGAGGAAGAGCCTGAGACAACAACCCGTCGGCCACTCATTCCG ATCAAATTCGACTCGGCGGCCGAAGCTGCAGGTCTCACTGACGAAGAACGTGCTCAGGCGGCCCGTCAACTCGCA GCAGAGATTCCGGCTGAGAAGGAAGGCCTGTGGAACTGGGCAATCAAGTGGGAATTTGTGGACGATGCTATCATC ACCGACCAACTCAAGCCTTTCGTTGAGAAGAAGATCGTCGAATATCTTGGTGTACAGGAGCAAATGCTTGTAGAT GTGGTGGAGGAACATGTGCGGAAGCATGGATCGCCCCAGGAGTTGGTGGAGCAGCTGGCAGAAGCATTGGACGAA GAGGCTGAAGTCCTCGTTCGCAAGCTTTGGCGCATGATCATTTTCTGTTCCGAGAGCGAGAAACGAGGCCTGTCC TTGTAG |
| Gene | >Pro_DTO377G3_2|g8582.t1 ATGTACAATCCTTACCAAGGTGAGTGCTATCTTCTCTTTGACCTTGATAAAGGTCTTGATGCTTCGGAAAACCTA AAACTAACTCTTACCTAGCTCCGGGTCTTTATGGACGCGCGCCTGACTACGGTGCCTATGGTGCGCCTCCGGGCA TGGGTGAGTTCACTCCTTTCGCGCATTAATGTTATTAACAATATATACTGACCAGTCTCAGCCCCTCCTCCAGGA ATGGCTGCTCCAGGCACTGCTGCCCCCCTCGGCATGCAGCAAGCAAATATCCAGCCTGGTCGTCCAGGAAGCTTC CCGCCCAACTTCCAACCGCCTATGAATATGCCAAACATCAATTTCTCTGCGCCGGTGATTCGCTTGGGTACTTCG GGCCCGAACAAGCCTGCAGCTCAGGAGAATGGTCGCGAACGGGGACCCGATGCTCCTGGGCGCCGCGGTGGTCTG GGGTCGATGGGAATGGATACCCAGCGCCATCATGGTCGCGAGACCATGATGCAGCTCCAGCCACCTACACGCGAC GAGGTCGTGCGCACCATTTTTATCGGTGGGATTACAGAGGGCGCAGGCGGTGATGATGGCATTGAGCGCATTCTA CGATCTACTGGTATCTTGCGTCGCTGGATTCGCGCGACAGATGCTGATGACAAACCTTGCCGGTTTGGCTTTGCC GAGTATGATGACCCGGAGAGTCTTGAGATTGCGGTTGAAACCCTGAAGGACGTGGAAGTCCCGGTCAAGATACAG GTACCCCTCGCCGAAGGCGATGAGGAACAAAAAGTCGAAAAGAGCAAGCTTCTAGTGCGTTAAAATTCCCTCCCT ATCCGCAAATCTGACTTCTAACTTGTCTACTAGGTCGTCGTCGACGAAGGTACCCTCACCTACCTAGAGCAATTC GAGTCTAGCCGAGCCGAACAAGACCCCGAGGAACGCCAGGCACGTTTCACCGCTGCGCGCAACAATCTGAACAAA GTCTTGACAAGCCTCTTCCATCCCACAGCCCCGCTGACAAAGGAGGAGATATCGGCCCTTGATCGGGAAGGCGAC ACGGAAATGAAGGACGCCGAGCCTGCAAAGGATGGGGAAGTGGTCACTATTCCCATCACCATTGAAGATGAGCTG GCCGATATCCCCCCAGAAATGCGCGCCAATGTGGCCAAGGAGATTTCGGCTTTCCGTGAACGAAGCACCCGCCGC GACATCGAGCGTATGAAACGCGAGGAAGAGATCGAGTCAATGGAGCGTGCACGCAACTCTGGCTCTCGGATCAAT CGACTTGTTTCGCCCCCGGCATCCGCTCCTAGTGGCCCTGCTGCCGGTATCAACGGTATTCCCTTGGGCCCACGG GATCGCAATGTGATGAACGCACCTTCTGGTCCGAGGGCATTCGGTGTGCAGATTCCTAAGGATTATCAGAAGGGA GTTGCTTTTGTCAATGCCGATGCCCTCAACGGTGACGACAACTCGGATGCTAGCGACGAGGAAATTGAACGCCGC CGACAGGATCGGCTCAAGGCTGAACAAGAGAAGGAATTCTCAGACCTGGAGCGCCGCTGGCTTGGCCGTGAACGC AGCCGAACCGCAGCCCTGGAGCGAGAGAAGAAGCGTGAGGATGAGGAAGACGGAAAGTTGCAAGCTGCGCACGAT GAGATGGAAGCACGACTTAACGCCTGGAACGATGATGTCGAGGACACCCGGAAGGCAGTCGATTACTACGCAGAT CGCGGTACCTGGCTCCGGACCCGTGCAGCCTTCCGTTCTCGTGAGGCCCATGTTGACGATGCCGATCGCGCCGCT GAGGATCGCGAACGTGTGCAATCCGCCAAGCAGCAGGAGCAGGCTCGCGGCATGGCCGACGACTTCCTCGCTCGC CAGGCCAAGGAGCTCGAGACACGTCCCCAGGAGGCACCGCGCGAACCCCAGCGCTTCAAGCTCTCTCTTGGAGCT GCCGCGCAGAAGGCCCAGGCCGCAACCAGCCGGCGCGCAGTGGCCGATGTGGAAGGTCTGCTGGAGGACGAGGAA GAGCCTGAGACAACAACCCGTCGGCCACTCATTCCGATCAAATTCGACTCGGCGGCCGAAGCTGCAGGTCTCACT GACGAAGAACGTGCTCAGGCGGCCCGTCAACTCGCAGCAGAGATTCCGGCTGAGAAGGAAGGCCTGTGGAACTGG GCAATCAAGTGGGAATTTGTGGACGATGCTATCATCACCGACCAACTCAAGCCTTTCGTTGAGAAGAAGATCGTC GAATATCTTGGTGTACAGGAGCAAATGCTTGTAGATGTGGTGGAGGAACATGTGCGGAAGCATGGATCGCCCCAG GAGTTGGTGGAGCAGCTGGCAGAAGTGAGTATTTACCCCTTGGTCTTCTTCTTGACACAATTTACTGACCTCAAT CCCCTATCTATAGGCATTGGACGAAGAGGCTGAAGTCCTCGTTCGCAAGCTTTGGCGCATGATCATTTTCTGTTC CGAGAGCGAGAAACGAGGCCTGTCCTTGTAG |