© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8580.t1 |
| Gene name | |
| Location | scaffold_34:214998..216343 |
| Strand | - |
| Gene length (bp) | 1345 |
| Transcript length (bp) | 1185 |
| Coding sequence length (bp) | 1185 |
| Protein length (aa) | 395 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 31 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 306 | 323 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 32.42 | 17.02 | 47.81 |
| 5d_25C | Five days - 25 degrees Celsius | 24.25 | 11.98 | 36.53 |
| 7d_25C | Seven days - 25 degrees Celsius | 26.01 | 12.87 | 39.15 |
| 10d_25C | Ten days - 25 degrees Celsius | 20.10 | 9.39 | 30.82 |
| 7d_15C | Seven days - 15 degrees Celsius | 24.59 | 11.43 | 37.76 |
| 7d_30C | Seven days - 30 degrees Celsius | 35.40 | 18.97 | 51.83 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.334809 | no |
| 3d_25C | 7d_25C | 0.491109 | no |
| 3d_25C | 7d_15C | 0.382028 | no |
| 3d_25C | 7d_30C | 0.811879 | no |
| 3d_25C | 10d_25C | 0.091039 | no |
| 5d_25C | 7d_25C | 0.862021 | no |
| 5d_25C | 7d_15C | 0.977493 | no |
| 5d_25C | 7d_30C | 0.163055 | no |
| 5d_25C | 10d_25C | 0.599006 | no |
| 7d_25C | 7d_15C | 0.898170 | no |
| 7d_25C | 7d_30C | 0.280529 | no |
| 7d_25C | 10d_25C | 0.439022 | no |
| 7d_15C | 7d_30C | 0.207685 | no |
| 7d_15C | 10d_25C | 0.582647 | no |
| 7d_30C | 10d_25C | 0.034125 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8580.t1 MSLLRQLSPSSAAVALLSLTGALWPTNALAGSTNDNSDGYKLREDIPVSCLNRTMEGEHVTDNLGKLQYVPFVTC NETARPLSLHYGISETITCTIDSLSDEMYHLLEFYVHSDVPMSCRVPTAPLTPSTSAEHADKDSDQKSGEADTLS ALADNGPPFTPLTIALQGTLQLSHLHIWTDMNVVMHNMASDAAAEQNTKTRGGQSLQPGFVVGGVAYSTPEFDNT GKNAKLDEDEEPVALAQAAREPWTAGHGTKVVRGEPLTFSFHVAWLEGGASIGWPVRPALESWLALATGSGKSSG SFFSKLVFFVMAASVGALVALFWERNGGRWRGRSAWHGDGLLGATPVRGAKSPGVTFGNGGKNNGYGGYSGPTIG NGNGNGLGSGYVLPTGKRD* |
| Coding | >Pro_DTO377G3_2|g8580.t1 ATGTCTCTTTTACGTCAATTGAGCCCGTCTTCCGCAGCAGTAGCGCTGCTGTCTTTGACAGGCGCATTGTGGCCA ACCAACGCACTTGCGGGGAGCACCAATGACAACAGCGACGGATACAAATTGAGAGAGGATATCCCAGTGTCATGT CTGAATCGAACCATGGAAGGAGAACATGTCACTGACAATCTCGGCAAACTCCAATACGTCCCCTTCGTGACCTGC AACGAAACCGCCCGCCCTCTCTCTCTCCACTACGGCATATCTGAAACAATAACATGCACCATCGACTCCCTCTCC GATGAGATGTACCACCTCCTCGAGTTCTACGTCCATTCGGATGTACCAATGAGCTGCCGCGTGCCAACAGCGCCG CTGACACCATCCACCAGCGCAGAGCACGCGGACAAAGACTCGGACCAGAAGTCAGGCGAAGCAGACACCCTCTCC GCACTAGCCGACAACGGGCCACCCTTCACGCCTCTCACAATCGCGCTGCAGGGCACACTCCAACTGAGCCATTTG CACATCTGGACGGATATGAACGTCGTAATGCACAACATGGCCTCGGACGCGGCTGCAGAACAAAACACCAAAACT CGCGGTGGTCAGTCTCTGCAGCCTGGCTTCGTGGTTGGCGGTGTTGCATACTCGACTCCCGAGTTCGACAACACC GGCAAGAATGCCAAGCTCGACGAGGACGAGGAGCCTGTTGCCCTTGCTCAGGCGGCACGCGAGCCGTGGACTGCT GGGCATGGCACTAAGGTTGTGCGTGGGGAGCCGCTTACCTTCTCTTTCCACGTTGCATGGTTGGAGGGCGGTGCC AGTATTGGGTGGCCGGTGCGGCCTGCTTTGGAATCGTGGCTGGCTTTGGCGACTGGGTCTGGGAAGAGCTCTGGG TCTTTCTTTTCCAAGCTGGTGTTCTTTGTTATGGCGGCCTCTGTTGGCGCTTTAGTTGCGCTTTTCTGGGAGCGC AATGGTGGGCGTTGGCGTGGGCGATCCGCTTGGCATGGAGATGGGCTTTTGGGTGCGACCCCCGTCCGTGGAGCG AAGAGTCCTGGTGTTACCTTTGGCAATGGGGGGAAGAACAATGGCTATGGTGGTTACTCCGGCCCTACTATTGGC AATGGCAATGGGAACGGGCTTGGAAGTGGATATGTCTTGCCAACTGGAAAGAGGGATTAA |
| Transcript | >Pro_DTO377G3_2|g8580.t1 ATGTCTCTTTTACGTCAATTGAGCCCGTCTTCCGCAGCAGTAGCGCTGCTGTCTTTGACAGGCGCATTGTGGCCA ACCAACGCACTTGCGGGGAGCACCAATGACAACAGCGACGGATACAAATTGAGAGAGGATATCCCAGTGTCATGT CTGAATCGAACCATGGAAGGAGAACATGTCACTGACAATCTCGGCAAACTCCAATACGTCCCCTTCGTGACCTGC AACGAAACCGCCCGCCCTCTCTCTCTCCACTACGGCATATCTGAAACAATAACATGCACCATCGACTCCCTCTCC GATGAGATGTACCACCTCCTCGAGTTCTACGTCCATTCGGATGTACCAATGAGCTGCCGCGTGCCAACAGCGCCG CTGACACCATCCACCAGCGCAGAGCACGCGGACAAAGACTCGGACCAGAAGTCAGGCGAAGCAGACACCCTCTCC GCACTAGCCGACAACGGGCCACCCTTCACGCCTCTCACAATCGCGCTGCAGGGCACACTCCAACTGAGCCATTTG CACATCTGGACGGATATGAACGTCGTAATGCACAACATGGCCTCGGACGCGGCTGCAGAACAAAACACCAAAACT CGCGGTGGTCAGTCTCTGCAGCCTGGCTTCGTGGTTGGCGGTGTTGCATACTCGACTCCCGAGTTCGACAACACC GGCAAGAATGCCAAGCTCGACGAGGACGAGGAGCCTGTTGCCCTTGCTCAGGCGGCACGCGAGCCGTGGACTGCT GGGCATGGCACTAAGGTTGTGCGTGGGGAGCCGCTTACCTTCTCTTTCCACGTTGCATGGTTGGAGGGCGGTGCC AGTATTGGGTGGCCGGTGCGGCCTGCTTTGGAATCGTGGCTGGCTTTGGCGACTGGGTCTGGGAAGAGCTCTGGG TCTTTCTTTTCCAAGCTGGTGTTCTTTGTTATGGCGGCCTCTGTTGGCGCTTTAGTTGCGCTTTTCTGGGAGCGC AATGGTGGGCGTTGGCGTGGGCGATCCGCTTGGCATGGAGATGGGCTTTTGGGTGCGACCCCCGTCCGTGGAGCG AAGAGTCCTGGTGTTACCTTTGGCAATGGGGGGAAGAACAATGGCTATGGTGGTTACTCCGGCCCTACTATTGGC AATGGCAATGGGAACGGGCTTGGAAGTGGATATGTCTTGCCAACTGGAAAGAGGGATTAA |
| Gene | >Pro_DTO377G3_2|g8580.t1 ATGTCTCTTTTACGTCAATTGAGCCCGTCTTCCGCAGCAGTAGCGCTGCTGTCTTTGACAGGCGCATTGTGGCCA ACCAACGCACTTGCGGGGAGCACCAATGACAACAGCGACGGATACAAATTGAGAGAGGATATCCCAGTGTCATGT CTGAATCGAACCATGTGAGACCACTCTTCAATCAAGCTGTAGAGTACGGCTAACCATTGCTCGTTCTACACCTGC AGGGAAGGAGAACATGTAAGCGCCACCAGTCTGCCTACCGTCTCCTGACACGAAGACAATAGCGCAGACTACCAG GAAACACAAAGCTAATAGCAACTACGAAAACATCCAGGTCACTGACAATCTCGGCAAACTCCAATACGTCCCCTT CGTGACCTGCAACGAAACCGCCCGCCCTCTCTCTCTCCACTACGGCATATCTGAAACAATAACATGCACCATCGA CTCCCTCTCCGATGAGATGTACCACCTCCTCGAGTTCTACGTCCATTCGGATGTACCAATGAGCTGCCGCGTGCC AACAGCGCCGCTGACACCATCCACCAGCGCAGAGCACGCGGACAAAGACTCGGACCAGAAGTCAGGCGAAGCAGA CACCCTCTCCGCACTAGCCGACAACGGGCCACCCTTCACGCCTCTCACAATCGCGCTGCAGGGCACACTCCAACT GAGCCATTTGCACATCTGGACGGATATGAACGTCGTAATGCACAACATGGCCTCGGACGCGGCTGCAGAACAAAA CACCAAAACTCGCGGTGGTCAGTCTCTGCAGCCTGGCTTCGTGGTTGGCGGTGTTGCATACTCGACTCCCGAGTT CGACAACACCGGCAAGAATGCCAAGCTCGACGAGGACGAGGAGCCTGTTGCCCTTGCTCAGGCGGCACGCGAGCC GTGGACTGCTGGGCATGGCACTAAGGTTGTGCGTGGGGAGCCGCTTACCTTCTCTTTCCACGTTGCATGGTTGGA GGGCGGTGCCAGTATTGGGTGGCCGGTGCGGCCTGCTTTGGAATCGTGGCTGGCTTTGGCGACTGGGTCTGGGAA GAGCTCTGGGTCTTTCTTTTCCAAGCTGGTGTTCTTTGTTATGGCGGCCTCTGTTGGCGCTTTAGTTGCGCTTTT CTGGGAGCGCAATGGTGGGCGTTGGCGTGGGCGATCCGCTTGGCATGGAGATGGGCTTTTGGGTGCGACCCCCGT CCGTGGAGCGAAGAGTCCTGGTGTTACCTTTGGCAATGGGGGGAAGAACAATGGCTATGGTGGTTACTCCGGCCC TACTATTGGCAATGGCAATGGGAACGGGCTTGGAAGTGGATATGTCTTGCCAACTGGAAAGAGGGATTAA |