© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8571.t1 |
| Gene name | |
| Location | scaffold_34:195071..196021 |
| Strand | - |
| Gene length (bp) | 950 |
| Transcript length (bp) | 756 |
| Coding sequence length (bp) | 756 |
| Protein length (aa) | 252 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00403 | HMA | Heavy-metal-associated domain | 5.0E-13 | 8 | 65 |
| PF00080 | Sod_Cu | Copper/zinc superoxide dismutase (SODC) | 1.1E-07 | 94 | 202 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0006801 | superoxide metabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0009987 | cellular process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0072593 | reactive oxygen species metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 99.03 | 58.16 | 139.89 |
| 5d_25C | Five days - 25 degrees Celsius | 135.77 | 81.39 | 190.14 |
| 7d_25C | Seven days - 25 degrees Celsius | 166.68 | 100.80 | 232.57 |
| 10d_25C | Ten days - 25 degrees Celsius | 219.41 | 133.76 | 305.06 |
| 7d_15C | Seven days - 15 degrees Celsius | 131.24 | 78.86 | 183.62 |
| 7d_30C | Seven days - 30 degrees Celsius | 137.01 | 82.04 | 191.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.175760 | no |
| 3d_25C | 7d_25C | 0.011688 | yes |
| 3d_25C | 7d_15C | 0.232845 | no |
| 3d_25C | 7d_30C | 0.155898 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.411808 | no |
| 5d_25C | 7d_15C | 0.922153 | no |
| 5d_25C | 7d_30C | 0.981316 | no |
| 5d_25C | 10d_25C | 0.019886 | yes |
| 7d_25C | 7d_15C | 0.319022 | no |
| 7d_25C | 7d_30C | 0.435730 | no |
| 7d_25C | 10d_25C | 0.226265 | no |
| 7d_15C | 7d_30C | 0.900338 | no |
| 7d_15C | 10d_25C | 0.011993 | yes |
| 7d_30C | 10d_25C | 0.023429 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8571.t1 MIEPFQTTFSVPMTCEGCVNSISSSLNSLEGINKVEANLKDQLVFIEGTAPPSSIVSAIESTGRDAILRGSGTTN SSAVCILETHSTTVSNNIRGLARMVQVSPNMTLIDLTINGLAPGKYWTTIREAGDISRGAESTGGIWESLKTKML GADATVAPAKECRGILGTVDVDNKGRGSVFLDRPVAIWELIGRSMVVSKGTQGPFKREDENTLVGVIARSAGVWD NDKMVCSCSGKNVWQERKEQVGLGMA* |
| Coding | >Pro_DTO377G3_2|g8571.t1 ATGATTGAACCATTCCAGACGACCTTCTCGGTCCCAATGACATGTGAAGGCTGCGTGAATTCTATATCCAGCTCT CTAAATAGCCTGGAAGGAATCAATAAAGTTGAAGCAAACCTTAAAGACCAGCTAGTCTTCATCGAAGGCACCGCC CCTCCCAGCTCCATCGTAAGCGCGATTGAGAGCACCGGCCGCGATGCCATCCTCCGTGGTAGCGGTACTACCAAC AGTTCCGCCGTATGTATCCTCGAAACACACTCAACGACCGTCTCCAACAACATCCGCGGACTCGCGCGCATGGTC CAGGTCTCCCCGAACATGACCCTCATCGACCTGACAATCAACGGCCTCGCGCCGGGCAAATACTGGACAACTATC CGTGAAGCGGGAGATATCTCCCGCGGTGCCGAGTCTACGGGTGGTATCTGGGAGTCTCTGAAGACCAAAATGCTT GGCGCTGATGCTACTGTCGCCCCGGCCAAGGAGTGCCGGGGCATTCTCGGTACCGTGGATGTTGACAATAAGGGC CGGGGTAGTGTGTTCTTGGACCGGCCTGTGGCAATCTGGGAGCTTATTGGCCGGAGTATGGTGGTTTCCAAGGGG ACGCAGGGTCCTTTCAAGCGCGAGGATGAGAATACCCTTGTTGGTGTTATTGCGCGCAGTGCAGGTGTGTGGGAT AATGATAAGATGGTTTGCTCGTGCTCGGGTAAGAATGTGTGGCAGGAGAGAAAGGAACAGGTTGGTTTGGGTATG GCTTGA |
| Transcript | >Pro_DTO377G3_2|g8571.t1 ATGATTGAACCATTCCAGACGACCTTCTCGGTCCCAATGACATGTGAAGGCTGCGTGAATTCTATATCCAGCTCT CTAAATAGCCTGGAAGGAATCAATAAAGTTGAAGCAAACCTTAAAGACCAGCTAGTCTTCATCGAAGGCACCGCC CCTCCCAGCTCCATCGTAAGCGCGATTGAGAGCACCGGCCGCGATGCCATCCTCCGTGGTAGCGGTACTACCAAC AGTTCCGCCGTATGTATCCTCGAAACACACTCAACGACCGTCTCCAACAACATCCGCGGACTCGCGCGCATGGTC CAGGTCTCCCCGAACATGACCCTCATCGACCTGACAATCAACGGCCTCGCGCCGGGCAAATACTGGACAACTATC CGTGAAGCGGGAGATATCTCCCGCGGTGCCGAGTCTACGGGTGGTATCTGGGAGTCTCTGAAGACCAAAATGCTT GGCGCTGATGCTACTGTCGCCCCGGCCAAGGAGTGCCGGGGCATTCTCGGTACCGTGGATGTTGACAATAAGGGC CGGGGTAGTGTGTTCTTGGACCGGCCTGTGGCAATCTGGGAGCTTATTGGCCGGAGTATGGTGGTTTCCAAGGGG ACGCAGGGTCCTTTCAAGCGCGAGGATGAGAATACCCTTGTTGGTGTTATTGCGCGCAGTGCAGGTGTGTGGGAT AATGATAAGATGGTTTGCTCGTGCTCGGGTAAGAATGTGTGGCAGGAGAGAAAGGAACAGGTTGGTTTGGGTATG GCTTGA |
| Gene | >Pro_DTO377G3_2|g8571.t1 ATGATTGAACCATTCCAGGTCAGCCTTGTCTGAGCGACATGACTCACAAACAGCCAGTACTAATGCGGTTCCTAT GTCTAGACGACCTTCTCGGTCCCAATGACATGTGAAGGCTGCGTGAATTCTATATCCAGCTCTCTAAATAGCCTG GAAGGTAGTCATCTCACGCGAGCATCTAAACCTTCACGCAAACTGACCCCGCGGCAGGAATCAATAAAGTTGAAG CAAACCTTAAAGACCAGCTAGTCTTCATCGAAGGCACCGCCCCTCCCAGCTCCATCGTAAGCGCGATTGAGAGCA CCGGCCGCGATGCCATCCTCCGTGGTAGCGGTACTACCAACAGTATGGAATCCCCGGTGTCTACTTACTATCCCA TGCGACATAAATGAGCAACCTCAATTGATACAAATTACCAAACAGGTTCCGCCGTATGTATCCTCGAAACACACT CAACGACCGTCTCCAACAACATCCGCGGACTCGCGCGCATGGTCCAGGTCTCCCCGAACATGACCCTCATCGACC TGACAATCAACGGCCTCGCGCCGGGCAAATACTGGACAACTATCCGTGAAGCGGGAGATATCTCCCGCGGTGCCG AGTCTACGGGTGGTATCTGGGAGTCTCTGAAGACCAAAATGCTTGGCGCTGATGCTACTGTCGCCCCGGCCAAGG AGTGCCGGGGCATTCTCGGTACCGTGGATGTTGACAATAAGGGCCGGGGTAGTGTGTTCTTGGACCGGCCTGTGG CAATCTGGGAGCTTATTGGCCGGAGTATGGTGGTTTCCAAGGGGACGCAGGGTCCTTTCAAGCGCGAGGATGAGA ATACCCTTGTTGGTGTTATTGCGCGCAGTGCAGGTGTGTGGGATAATGATAAGATGGTTTGCTCGTGCTCGGGTA AGAATGTGTGGCAGGAGAGAAAGGAACAGGTTGGTTTGGGTATGGCTTGA |