Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8567.t1
Gene name
Locationscaffold_34:182434..183528
Strand-
Gene length (bp)1094
Transcript length (bp)864
Coding sequence length (bp)864
Protein length (aa) 288

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12353 eIF3g Eukaryotic translation initiation factor 3 subunit G 1.7E-44 25 152
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-14 209 272

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 59 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 150.38 91.94 208.81
5d_25C Five days - 25 degrees Celsius 128.28 78.12 178.45
7d_25C Seven days - 25 degrees Celsius 159.55 98.00 221.10
10d_25C Ten days - 25 degrees Celsius 153.92 94.52 213.32
7d_15C Seven days - 15 degrees Celsius 146.92 89.44 204.40
7d_30C Seven days - 30 degrees Celsius 126.78 77.02 176.55

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.536545 no
3d_25C 7d_25C 0.846169 no
3d_25C 7d_15C 0.945320 no
3d_25C 7d_30C 0.493502 no
3d_25C 10d_25C 0.946238 no
5d_25C 7d_25C 0.363210 no
5d_25C 7d_15C 0.621110 no
5d_25C 7d_30C 0.974005 no
5d_25C 10d_25C 0.467393 no
7d_25C 7d_15C 0.779399 no
7d_25C 7d_30C 0.324148 no
7d_25C 10d_25C 0.913214 no
7d_15C 7d_30C 0.577818 no
7d_15C 10d_25C 0.884442 no
7d_30C 10d_25C 0.434421 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8567.t1
MSPAGNRADWADDEDFDDPSVLPPQEVIANKDGTKTVISYRYNDDNKKVKVTRRIKTTIVREHVNPQVAERRKWD
KFGLEKGHAAGPSFDTTSVGENIVFRPSVNWKANAKEAEKEGPEKGSMKDQLKDKKVKCRICSGEHFTARCPFKD
TMAPVEEGTSAAGGAEAEDDAGGLGAGKSSYVPPHMRKGGAGGGEKMGGRFEKDDLATLRVTNVSELAEENELRD
LFERFGRVTRVFLARDRETQRAKGFAFISYADRGDAALACEKVDGFGYRHLILRVEFAKRTT*
Coding >Pro_DTO377G3_2|g8567.t1
ATGTCTCCAGCTGGGAACCGCGCCGACTGGGCCGACGACGAAGATTTCGATGACCCCTCCGTGCTCCCGCCGCAA
GAAGTGATCGCGAACAAGGACGGCACCAAGACCGTCATTTCCTACCGCTACAATGACGACAACAAGAAAGTGAAG
GTCACCCGCCGAATTAAGACCACTATTGTCCGCGAACACGTCAACCCTCAGGTCGCCGAACGCCGCAAATGGGAC
AAGTTCGGTCTCGAGAAGGGCCACGCCGCCGGTCCCTCATTCGACACCACCTCCGTCGGCGAGAACATCGTCTTC
CGACCCAGCGTCAACTGGAAGGCTAATGCTAAGGAGGCTGAGAAGGAGGGTCCCGAGAAGGGCAGCATGAAGGAC
CAGTTGAAGGACAAGAAGGTCAAGTGTCGTATTTGCAGTGGAGAGCATTTCACGGCTCGCTGTCCCTTCAAGGAC
ACCATGGCCCCCGTCGAGGAGGGCACTTCTGCTGCTGGTGGCGCCGAGGCGGAGGACGATGCGGGTGGTCTTGGT
GCTGGAAAGTCCAGCTACGTTCCTCCTCACATGCGGAAGGGCGGTGCTGGTGGCGGCGAGAAGATGGGTGGTCGC
TTCGAGAAGGACGATTTGGCGACACTGAGAGTTACAAACGTCAGCGAGTTGGCAGAGGAGAACGAGTTGCGGGAT
CTCTTCGAGCGTTTCGGTCGTGTCACCAGAGTTTTCCTTGCACGGGATCGGGAAACCCAGAGAGCCAAGGGCTTT
GCTTTCATCAGCTATGCGGATCGTGGCGACGCAGCACTTGCTTGCGAGAAGGTGGATGGCTTCGGTTACCGCCAC
CTTATTCTCCGCGTCGAGTTCGCCAAGCGCACTACTTAA
Transcript >Pro_DTO377G3_2|g8567.t1
ATGTCTCCAGCTGGGAACCGCGCCGACTGGGCCGACGACGAAGATTTCGATGACCCCTCCGTGCTCCCGCCGCAA
GAAGTGATCGCGAACAAGGACGGCACCAAGACCGTCATTTCCTACCGCTACAATGACGACAACAAGAAAGTGAAG
GTCACCCGCCGAATTAAGACCACTATTGTCCGCGAACACGTCAACCCTCAGGTCGCCGAACGCCGCAAATGGGAC
AAGTTCGGTCTCGAGAAGGGCCACGCCGCCGGTCCCTCATTCGACACCACCTCCGTCGGCGAGAACATCGTCTTC
CGACCCAGCGTCAACTGGAAGGCTAATGCTAAGGAGGCTGAGAAGGAGGGTCCCGAGAAGGGCAGCATGAAGGAC
CAGTTGAAGGACAAGAAGGTCAAGTGTCGTATTTGCAGTGGAGAGCATTTCACGGCTCGCTGTCCCTTCAAGGAC
ACCATGGCCCCCGTCGAGGAGGGCACTTCTGCTGCTGGTGGCGCCGAGGCGGAGGACGATGCGGGTGGTCTTGGT
GCTGGAAAGTCCAGCTACGTTCCTCCTCACATGCGGAAGGGCGGTGCTGGTGGCGGCGAGAAGATGGGTGGTCGC
TTCGAGAAGGACGATTTGGCGACACTGAGAGTTACAAACGTCAGCGAGTTGGCAGAGGAGAACGAGTTGCGGGAT
CTCTTCGAGCGTTTCGGTCGTGTCACCAGAGTTTTCCTTGCACGGGATCGGGAAACCCAGAGAGCCAAGGGCTTT
GCTTTCATCAGCTATGCGGATCGTGGCGACGCAGCACTTGCTTGCGAGAAGGTGGATGGCTTCGGTTACCGCCAC
CTTATTCTCCGCGTCGAGTTCGCCAAGCGCACTACTTAA
Gene >Pro_DTO377G3_2|g8567.t1
ATGTCTCCAGCTGGGAAGTGAGTATACACAGTTGCATCCTACAAAAAACACCGGCCTAACAAATCTTTCTATTTT
ACAGCCGCGCCGACTGGGCCGACGACGAAGATTTCGATGACCCCTCCGTGCTCCCGCCGCAAGAAGTGATCGCGA
ACAAGGACGGCACCAAGACCGTCATTTCCTACCGCTACAATGACGACAACAAGAAAGTGAAGGTCACCCGCCGAA
TTAAGACCACTATTGTCCGCGAACACGTCAACCCTCAGGTCGCCGAACGCCGCAAATGGGACAAGTTCGGTCTCG
AGAAGGGCCACGCCGCCGGTCCCTCATTCGACACCACCTCCGTCGGCGAGAACATCGTCTTCCGACCCAGCGTCA
ACTGGAAGGCTAATGCTAAGGAGGCTGAGAAGGAGGGTCCCGAGAAGGGCAGCATGAAGGACCAGTTGAAGGACA
AGAAGGTCAAGTGTCGTATTTGCAGTGGAGAGCATTTCACGGCTCGCTGTCCCTTCAAGGACACCATGGCCCCCG
TCGAGGAGGGCACTTCTGCTGCTGGTGGCGCCGAGGCGGAGGACGATGCGGGTGGTCTTGGTGCTGGAAAGTCCA
GCTACGTTCCTCCTCACATGCGGAAGGGCGGTGCTGGTGGCGGCGAGAAGATGGGTGGTCGCTTCGAGAAGGACG
ATTTGGCGACACTGAGAGTTACAAACGTATGTTCTGCCATTGTTCTGCTATCTACGAGCTCTATGAGCTCTACGA
GCATCGTGATTGTTTATCTTGGTTCGATACTGACTTTTTCAAATAGGTCAGCGAGTTGGCAGAGGAGAACGAGTT
GCGGGATCTCTTCGAGCGTTTCGGTCGTGTCACCAGAGTTTTCCTTGCACGGGATCGGGAAACCCAGAGAGCCAA
GGGCTTTGCTTTCATCAGCTATGCGGATCGTGGCGACGCAGCACTTGCTTGCGAGAAGGTGGATGGCTGTATGTC
TTCAACGCTCCGATTCGTGATCTTCTTTTTACAAGTTCCTCGAGTGCTAACCCGTTCTTCTGCTAGTCGGTTACC
GCCACCTTATTCTCCGCGTCGAGTTCGCCAAGCGCACTACTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail