© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8567.t1 |
| Gene name | |
| Location | scaffold_34:182434..183528 |
| Strand | - |
| Gene length (bp) | 1094 |
| Transcript length (bp) | 864 |
| Coding sequence length (bp) | 864 |
| Protein length (aa) | 288 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12353 | eIF3g | Eukaryotic translation initiation factor 3 subunit G | 1.7E-44 | 25 | 152 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.8E-14 | 209 | 272 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 59 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 150.38 | 91.94 | 208.81 |
| 5d_25C | Five days - 25 degrees Celsius | 128.28 | 78.12 | 178.45 |
| 7d_25C | Seven days - 25 degrees Celsius | 159.55 | 98.00 | 221.10 |
| 10d_25C | Ten days - 25 degrees Celsius | 153.92 | 94.52 | 213.32 |
| 7d_15C | Seven days - 15 degrees Celsius | 146.92 | 89.44 | 204.40 |
| 7d_30C | Seven days - 30 degrees Celsius | 126.78 | 77.02 | 176.55 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.536545 | no |
| 3d_25C | 7d_25C | 0.846169 | no |
| 3d_25C | 7d_15C | 0.945320 | no |
| 3d_25C | 7d_30C | 0.493502 | no |
| 3d_25C | 10d_25C | 0.946238 | no |
| 5d_25C | 7d_25C | 0.363210 | no |
| 5d_25C | 7d_15C | 0.621110 | no |
| 5d_25C | 7d_30C | 0.974005 | no |
| 5d_25C | 10d_25C | 0.467393 | no |
| 7d_25C | 7d_15C | 0.779399 | no |
| 7d_25C | 7d_30C | 0.324148 | no |
| 7d_25C | 10d_25C | 0.913214 | no |
| 7d_15C | 7d_30C | 0.577818 | no |
| 7d_15C | 10d_25C | 0.884442 | no |
| 7d_30C | 10d_25C | 0.434421 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8567.t1 MSPAGNRADWADDEDFDDPSVLPPQEVIANKDGTKTVISYRYNDDNKKVKVTRRIKTTIVREHVNPQVAERRKWD KFGLEKGHAAGPSFDTTSVGENIVFRPSVNWKANAKEAEKEGPEKGSMKDQLKDKKVKCRICSGEHFTARCPFKD TMAPVEEGTSAAGGAEAEDDAGGLGAGKSSYVPPHMRKGGAGGGEKMGGRFEKDDLATLRVTNVSELAEENELRD LFERFGRVTRVFLARDRETQRAKGFAFISYADRGDAALACEKVDGFGYRHLILRVEFAKRTT* |
| Coding | >Pro_DTO377G3_2|g8567.t1 ATGTCTCCAGCTGGGAACCGCGCCGACTGGGCCGACGACGAAGATTTCGATGACCCCTCCGTGCTCCCGCCGCAA GAAGTGATCGCGAACAAGGACGGCACCAAGACCGTCATTTCCTACCGCTACAATGACGACAACAAGAAAGTGAAG GTCACCCGCCGAATTAAGACCACTATTGTCCGCGAACACGTCAACCCTCAGGTCGCCGAACGCCGCAAATGGGAC AAGTTCGGTCTCGAGAAGGGCCACGCCGCCGGTCCCTCATTCGACACCACCTCCGTCGGCGAGAACATCGTCTTC CGACCCAGCGTCAACTGGAAGGCTAATGCTAAGGAGGCTGAGAAGGAGGGTCCCGAGAAGGGCAGCATGAAGGAC CAGTTGAAGGACAAGAAGGTCAAGTGTCGTATTTGCAGTGGAGAGCATTTCACGGCTCGCTGTCCCTTCAAGGAC ACCATGGCCCCCGTCGAGGAGGGCACTTCTGCTGCTGGTGGCGCCGAGGCGGAGGACGATGCGGGTGGTCTTGGT GCTGGAAAGTCCAGCTACGTTCCTCCTCACATGCGGAAGGGCGGTGCTGGTGGCGGCGAGAAGATGGGTGGTCGC TTCGAGAAGGACGATTTGGCGACACTGAGAGTTACAAACGTCAGCGAGTTGGCAGAGGAGAACGAGTTGCGGGAT CTCTTCGAGCGTTTCGGTCGTGTCACCAGAGTTTTCCTTGCACGGGATCGGGAAACCCAGAGAGCCAAGGGCTTT GCTTTCATCAGCTATGCGGATCGTGGCGACGCAGCACTTGCTTGCGAGAAGGTGGATGGCTTCGGTTACCGCCAC CTTATTCTCCGCGTCGAGTTCGCCAAGCGCACTACTTAA |
| Transcript | >Pro_DTO377G3_2|g8567.t1 ATGTCTCCAGCTGGGAACCGCGCCGACTGGGCCGACGACGAAGATTTCGATGACCCCTCCGTGCTCCCGCCGCAA GAAGTGATCGCGAACAAGGACGGCACCAAGACCGTCATTTCCTACCGCTACAATGACGACAACAAGAAAGTGAAG GTCACCCGCCGAATTAAGACCACTATTGTCCGCGAACACGTCAACCCTCAGGTCGCCGAACGCCGCAAATGGGAC AAGTTCGGTCTCGAGAAGGGCCACGCCGCCGGTCCCTCATTCGACACCACCTCCGTCGGCGAGAACATCGTCTTC CGACCCAGCGTCAACTGGAAGGCTAATGCTAAGGAGGCTGAGAAGGAGGGTCCCGAGAAGGGCAGCATGAAGGAC CAGTTGAAGGACAAGAAGGTCAAGTGTCGTATTTGCAGTGGAGAGCATTTCACGGCTCGCTGTCCCTTCAAGGAC ACCATGGCCCCCGTCGAGGAGGGCACTTCTGCTGCTGGTGGCGCCGAGGCGGAGGACGATGCGGGTGGTCTTGGT GCTGGAAAGTCCAGCTACGTTCCTCCTCACATGCGGAAGGGCGGTGCTGGTGGCGGCGAGAAGATGGGTGGTCGC TTCGAGAAGGACGATTTGGCGACACTGAGAGTTACAAACGTCAGCGAGTTGGCAGAGGAGAACGAGTTGCGGGAT CTCTTCGAGCGTTTCGGTCGTGTCACCAGAGTTTTCCTTGCACGGGATCGGGAAACCCAGAGAGCCAAGGGCTTT GCTTTCATCAGCTATGCGGATCGTGGCGACGCAGCACTTGCTTGCGAGAAGGTGGATGGCTTCGGTTACCGCCAC CTTATTCTCCGCGTCGAGTTCGCCAAGCGCACTACTTAA |
| Gene | >Pro_DTO377G3_2|g8567.t1 ATGTCTCCAGCTGGGAAGTGAGTATACACAGTTGCATCCTACAAAAAACACCGGCCTAACAAATCTTTCTATTTT ACAGCCGCGCCGACTGGGCCGACGACGAAGATTTCGATGACCCCTCCGTGCTCCCGCCGCAAGAAGTGATCGCGA ACAAGGACGGCACCAAGACCGTCATTTCCTACCGCTACAATGACGACAACAAGAAAGTGAAGGTCACCCGCCGAA TTAAGACCACTATTGTCCGCGAACACGTCAACCCTCAGGTCGCCGAACGCCGCAAATGGGACAAGTTCGGTCTCG AGAAGGGCCACGCCGCCGGTCCCTCATTCGACACCACCTCCGTCGGCGAGAACATCGTCTTCCGACCCAGCGTCA ACTGGAAGGCTAATGCTAAGGAGGCTGAGAAGGAGGGTCCCGAGAAGGGCAGCATGAAGGACCAGTTGAAGGACA AGAAGGTCAAGTGTCGTATTTGCAGTGGAGAGCATTTCACGGCTCGCTGTCCCTTCAAGGACACCATGGCCCCCG TCGAGGAGGGCACTTCTGCTGCTGGTGGCGCCGAGGCGGAGGACGATGCGGGTGGTCTTGGTGCTGGAAAGTCCA GCTACGTTCCTCCTCACATGCGGAAGGGCGGTGCTGGTGGCGGCGAGAAGATGGGTGGTCGCTTCGAGAAGGACG ATTTGGCGACACTGAGAGTTACAAACGTATGTTCTGCCATTGTTCTGCTATCTACGAGCTCTATGAGCTCTACGA GCATCGTGATTGTTTATCTTGGTTCGATACTGACTTTTTCAAATAGGTCAGCGAGTTGGCAGAGGAGAACGAGTT GCGGGATCTCTTCGAGCGTTTCGGTCGTGTCACCAGAGTTTTCCTTGCACGGGATCGGGAAACCCAGAGAGCCAA GGGCTTTGCTTTCATCAGCTATGCGGATCGTGGCGACGCAGCACTTGCTTGCGAGAAGGTGGATGGCTGTATGTC TTCAACGCTCCGATTCGTGATCTTCTTTTTACAAGTTCCTCGAGTGCTAACCCGTTCTTCTGCTAGTCGGTTACC GCCACCTTATTCTCCGCGTCGAGTTCGCCAAGCGCACTACTTAA |