Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8567.t1
Gene name
Locationscaffold_34:182434..183528
Strand-
Gene length (bp)1094
Transcript length (bp)864
Coding sequence length (bp)864
Protein length (aa) 288

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12353 eIF3g Eukaryotic translation initiation factor 3 subunit G 2.9E-44 25 152
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-14 209 273

GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 59 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8567.t1
MSPAGNRADWADDEDFDDPSVLPPQEVIANKDGTKTVISYRYNDDNKKVKVTRRIKTTIVREHVNPQVAERRKWD
KFGLEKGHAAGPSFDTTSVGENIVFRPSVNWKANAKEAEKEGPEKGSMKDQLKDKKVKCRICSGEHFTARCPFKD
TMAPVEEGTSAAGGAEAEDDAGGLGAGKSSYVPPHMRKGGAGGGEKMGGRFEKDDLATLRVTNVSELAEENELRD
LFERFGRVTRVFLARDRETQRAKGFAFISYADRGDAALACEKVDGFGYRHLILRVEFAKRTT*
Coding >Pro_DTO377G3_2|g8567.t1
ATGTCTCCAGCTGGGAACCGCGCCGACTGGGCCGACGACGAAGATTTCGATGACCCCTCCGTGCTCCCGCCGCAA
GAAGTGATCGCGAACAAGGACGGCACCAAGACCGTCATTTCCTACCGCTACAATGACGACAACAAGAAAGTGAAG
GTCACCCGCCGAATTAAGACCACTATTGTCCGCGAACACGTCAACCCTCAGGTCGCCGAACGCCGCAAATGGGAC
AAGTTCGGTCTCGAGAAGGGCCACGCCGCCGGTCCCTCATTCGACACCACCTCCGTCGGCGAGAACATCGTCTTC
CGACCCAGCGTCAACTGGAAGGCTAATGCTAAGGAGGCTGAGAAGGAGGGTCCCGAGAAGGGCAGCATGAAGGAC
CAGTTGAAGGACAAGAAGGTCAAGTGTCGTATTTGCAGTGGAGAGCATTTCACGGCTCGCTGTCCCTTCAAGGAC
ACCATGGCCCCCGTCGAGGAGGGCACTTCTGCTGCTGGTGGCGCCGAGGCGGAGGACGATGCGGGTGGTCTTGGT
GCTGGAAAGTCCAGCTACGTTCCTCCTCACATGCGGAAGGGCGGTGCTGGTGGCGGCGAGAAGATGGGTGGTCGC
TTCGAGAAGGACGATTTGGCGACACTGAGAGTTACAAACGTCAGCGAGTTGGCAGAGGAGAACGAGTTGCGGGAT
CTCTTCGAGCGTTTCGGTCGTGTCACCAGAGTTTTCCTTGCACGGGATCGGGAAACCCAGAGAGCCAAGGGCTTT
GCTTTCATCAGCTATGCGGATCGTGGCGACGCAGCACTTGCTTGCGAGAAGGTGGATGGCTTCGGTTACCGCCAC
CTTATTCTCCGCGTCGAGTTCGCCAAGCGCACTACTTAA
Transcript >Pro_DTO377G3_2|g8567.t1
ATGTCTCCAGCTGGGAACCGCGCCGACTGGGCCGACGACGAAGATTTCGATGACCCCTCCGTGCTCCCGCCGCAA
GAAGTGATCGCGAACAAGGACGGCACCAAGACCGTCATTTCCTACCGCTACAATGACGACAACAAGAAAGTGAAG
GTCACCCGCCGAATTAAGACCACTATTGTCCGCGAACACGTCAACCCTCAGGTCGCCGAACGCCGCAAATGGGAC
AAGTTCGGTCTCGAGAAGGGCCACGCCGCCGGTCCCTCATTCGACACCACCTCCGTCGGCGAGAACATCGTCTTC
CGACCCAGCGTCAACTGGAAGGCTAATGCTAAGGAGGCTGAGAAGGAGGGTCCCGAGAAGGGCAGCATGAAGGAC
CAGTTGAAGGACAAGAAGGTCAAGTGTCGTATTTGCAGTGGAGAGCATTTCACGGCTCGCTGTCCCTTCAAGGAC
ACCATGGCCCCCGTCGAGGAGGGCACTTCTGCTGCTGGTGGCGCCGAGGCGGAGGACGATGCGGGTGGTCTTGGT
GCTGGAAAGTCCAGCTACGTTCCTCCTCACATGCGGAAGGGCGGTGCTGGTGGCGGCGAGAAGATGGGTGGTCGC
TTCGAGAAGGACGATTTGGCGACACTGAGAGTTACAAACGTCAGCGAGTTGGCAGAGGAGAACGAGTTGCGGGAT
CTCTTCGAGCGTTTCGGTCGTGTCACCAGAGTTTTCCTTGCACGGGATCGGGAAACCCAGAGAGCCAAGGGCTTT
GCTTTCATCAGCTATGCGGATCGTGGCGACGCAGCACTTGCTTGCGAGAAGGTGGATGGCTTCGGTTACCGCCAC
CTTATTCTCCGCGTCGAGTTCGCCAAGCGCACTACTTAA
Gene >Pro_DTO377G3_2|g8567.t1
ATGTCTCCAGCTGGGAAGTGAGTATACACAGTTGCATCCTACAAAAAACACCGGCCTAACAAATCTTTCTATTTT
ACAGCCGCGCCGACTGGGCCGACGACGAAGATTTCGATGACCCCTCCGTGCTCCCGCCGCAAGAAGTGATCGCGA
ACAAGGACGGCACCAAGACCGTCATTTCCTACCGCTACAATGACGACAACAAGAAAGTGAAGGTCACCCGCCGAA
TTAAGACCACTATTGTCCGCGAACACGTCAACCCTCAGGTCGCCGAACGCCGCAAATGGGACAAGTTCGGTCTCG
AGAAGGGCCACGCCGCCGGTCCCTCATTCGACACCACCTCCGTCGGCGAGAACATCGTCTTCCGACCCAGCGTCA
ACTGGAAGGCTAATGCTAAGGAGGCTGAGAAGGAGGGTCCCGAGAAGGGCAGCATGAAGGACCAGTTGAAGGACA
AGAAGGTCAAGTGTCGTATTTGCAGTGGAGAGCATTTCACGGCTCGCTGTCCCTTCAAGGACACCATGGCCCCCG
TCGAGGAGGGCACTTCTGCTGCTGGTGGCGCCGAGGCGGAGGACGATGCGGGTGGTCTTGGTGCTGGAAAGTCCA
GCTACGTTCCTCCTCACATGCGGAAGGGCGGTGCTGGTGGCGGCGAGAAGATGGGTGGTCGCTTCGAGAAGGACG
ATTTGGCGACACTGAGAGTTACAAACGTATGTTCTGCCATTGTTCTGCTATCTACGAGCTCTATGAGCTCTACGA
GCATCGTGATTGTTTATCTTGGTTCGATACTGACTTTTTCAAATAGGTCAGCGAGTTGGCAGAGGAGAACGAGTT
GCGGGATCTCTTCGAGCGTTTCGGTCGTGTCACCAGAGTTTTCCTTGCACGGGATCGGGAAACCCAGAGAGCCAA
GGGCTTTGCTTTCATCAGCTATGCGGATCGTGGCGACGCAGCACTTGCTTGCGAGAAGGTGGATGGCTGTATGTC
TTCAACGCTCCGATTCGTGATCTTCTTTTTACAAGTTCCTCGAGTGCTAACCCGTTCTTCTGCTAGTCGGTTACC
GCCACCTTATTCTCCGCGTCGAGTTCGCCAAGCGCACTACTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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