© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g8555.t1 |
| Gene name | |
| Location | scaffold_34:140291..141221 |
| Strand | + |
| Gene length (bp) | 930 |
| Transcript length (bp) | 804 |
| Coding sequence length (bp) | 804 |
| Protein length (aa) | 268 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.8E-08 | 8 | 73 |
| PF14605 | Nup35_RRM_2 | Nup53/35/40-type RNA recognition motif | 6.9E-07 | 5 | 62 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 393.94 | 237.96 | 549.92 |
| 5d_25C | Five days - 25 degrees Celsius | 407.80 | 247.18 | 568.42 |
| 7d_25C | Seven days - 25 degrees Celsius | 396.28 | 239.39 | 553.16 |
| 10d_25C | Ten days - 25 degrees Celsius | 509.86 | 304.64 | 715.08 |
| 7d_15C | Seven days - 15 degrees Celsius | 572.43 | 337.22 | 807.65 |
| 7d_30C | Seven days - 30 degrees Celsius | 303.75 | 184.06 | 423.44 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.920932 | no |
| 3d_25C | 7d_25C | 0.987217 | no |
| 3d_25C | 7d_15C | 0.101429 | no |
| 3d_25C | 7d_30C | 0.270636 | no |
| 3d_25C | 10d_25C | 0.284785 | no |
| 5d_25C | 7d_25C | 0.933641 | no |
| 5d_25C | 7d_15C | 0.140277 | no |
| 5d_25C | 7d_30C | 0.197084 | no |
| 5d_25C | 10d_25C | 0.368607 | no |
| 7d_25C | 7d_15C | 0.101996 | no |
| 7d_25C | 7d_30C | 0.257627 | no |
| 7d_25C | 10d_25C | 0.299970 | no |
| 7d_15C | 7d_30C | 0.001804 | yes |
| 7d_15C | 10d_25C | 0.694353 | no |
| 7d_30C | 10d_25C | 0.012609 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8555.t1 MANSTVHVSGISSTTSEKEVRDFFSFCGKIVTLSITPVSGEADAPKSATVTFEKEAAAKTALLLDQTQLGTSAVH VEATHNIEEIGGSHVTDAETEAREEEHIAQEDKPRSRIVAEYLAHGYVVSDNAIMKAIALDKKHGVSHRFTTALT NFDKKYNATERAKGIDNDYQISTKAANGWRGLSSYFEKALESPSGQKLRDFYVQTDKQVRDIHAEARRLADLKQG KTEAAAAAPGPAAVAEPATEPAAQPAAVPSQPEAAAAPVEKS* |
| Coding | >Pro_DTO377G3_2|g8555.t1 ATGGCTAATTCCACTGTCCACGTTTCTGGCATCTCGTCAACAACCTCCGAGAAGGAGGTTCGCGACTTCTTCAGC TTCTGCGGAAAGATTGTCACCCTCTCCATCACCCCAGTCTCTGGGGAGGCCGATGCTCCGAAGTCCGCCACTGTG ACGTTCGAAAAGGAGGCCGCAGCCAAGACTGCCCTCCTCCTAGACCAGACCCAACTGGGCACTTCTGCCGTTCAC GTTGAAGCAACCCACAACATCGAAGAAATAGGCGGATCCCATGTCACCGACGCGGAGACCGAGGCCCGGGAAGAG GAGCACATCGCGCAAGAAGACAAGCCCCGATCGCGCATCGTCGCAGAGTACCTGGCGCACGGGTACGTAGTGAGC GACAATGCCATCATGAAGGCGATCGCGCTGGACAAGAAGCACGGTGTCTCGCACCGCTTCACGACCGCGCTCACC AACTTCGATAAGAAGTACAATGCCACCGAGCGCGCCAAGGGCATCGATAACGACTATCAGATCTCCACTAAGGCA GCCAATGGCTGGCGCGGCCTGAGCTCGTACTTCGAGAAGGCCCTGGAGTCCCCCTCTGGCCAGAAGCTGCGCGAC TTTTATGTTCAGACCGATAAGCAGGTGCGCGATATCCACGCCGAGGCCCGTCGTCTGGCGGATTTGAAGCAGGGT AAGACTGAGGCTGCTGCCGCTGCCCCTGGCCCTGCTGCTGTTGCTGAGCCTGCTACTGAGCCCGCTGCTCAGCCC GCTGCTGTTCCTTCTCAGCCCGAGGCTGCTGCTGCGCCTGTTGAGAAGTCCTAA |
| Transcript | >Pro_DTO377G3_2|g8555.t1 ATGGCTAATTCCACTGTCCACGTTTCTGGCATCTCGTCAACAACCTCCGAGAAGGAGGTTCGCGACTTCTTCAGC TTCTGCGGAAAGATTGTCACCCTCTCCATCACCCCAGTCTCTGGGGAGGCCGATGCTCCGAAGTCCGCCACTGTG ACGTTCGAAAAGGAGGCCGCAGCCAAGACTGCCCTCCTCCTAGACCAGACCCAACTGGGCACTTCTGCCGTTCAC GTTGAAGCAACCCACAACATCGAAGAAATAGGCGGATCCCATGTCACCGACGCGGAGACCGAGGCCCGGGAAGAG GAGCACATCGCGCAAGAAGACAAGCCCCGATCGCGCATCGTCGCAGAGTACCTGGCGCACGGGTACGTAGTGAGC GACAATGCCATCATGAAGGCGATCGCGCTGGACAAGAAGCACGGTGTCTCGCACCGCTTCACGACCGCGCTCACC AACTTCGATAAGAAGTACAATGCCACCGAGCGCGCCAAGGGCATCGATAACGACTATCAGATCTCCACTAAGGCA GCCAATGGCTGGCGCGGCCTGAGCTCGTACTTCGAGAAGGCCCTGGAGTCCCCCTCTGGCCAGAAGCTGCGCGAC TTTTATGTTCAGACCGATAAGCAGGTGCGCGATATCCACGCCGAGGCCCGTCGTCTGGCGGATTTGAAGCAGGGT AAGACTGAGGCTGCTGCCGCTGCCCCTGGCCCTGCTGCTGTTGCTGAGCCTGCTACTGAGCCCGCTGCTCAGCCC GCTGCTGTTCCTTCTCAGCCCGAGGCTGCTGCTGCGCCTGTTGAGAAGTCCTAA |
| Gene | >Pro_DTO377G3_2|g8555.t1 ATGGCTAATTCCACTGTCCACGTTTCTGGCATCTCGTCAACAACCTCCGAGAAGGAGGTTCGCGACTTCTTCAGC TTCTGGTACATTATTACAATGATTTTTTTTATTTGACCAAGTGCTAACATAAAACAGCGGAAAGATTGTCACCCT CTCCATCACCCCAGTCTCTGGGGAGGCCGATGCTCCGAAGTCCGCCACTGTGACGTTCGAAAAGGAGGCGTAAGC TACCCCGCACCCAGTTTCAGCCCGCAATCAGCCCACATCAACACAAACTAACGCAATTTCTAAAACAGCGCAGCC AAGACTGCCCTCCTCCTAGACCAGACCCAACTGGGCACTTCTGCCGTTCACGTTGAAGCAACCCACAACATCGAA GAAATAGGCGGATCCCATGTCACCGACGCGGAGACCGAGGCCCGGGAAGAGGAGCACATCGCGCAAGAAGACAAG CCCCGATCGCGCATCGTCGCAGAGTACCTGGCGCACGGGTACGTAGTGAGCGACAATGCCATCATGAAGGCGATC GCGCTGGACAAGAAGCACGGTGTCTCGCACCGCTTCACGACCGCGCTCACCAACTTCGATAAGAAGTACAATGCC ACCGAGCGCGCCAAGGGCATCGATAACGACTATCAGATCTCCACTAAGGCAGCCAATGGCTGGCGCGGCCTGAGC TCGTACTTCGAGAAGGCCCTGGAGTCCCCCTCTGGCCAGAAGCTGCGCGACTTTTATGTTCAGACCGATAAGCAG GTGCGCGATATCCACGCCGAGGCCCGTCGTCTGGCGGATTTGAAGCAGGGTAAGACTGAGGCTGCTGCCGCTGCC CCTGGCCCTGCTGCTGTTGCTGAGCCTGCTACTGAGCCCGCTGCTCAGCCCGCTGCTGTTCCTTCTCAGCCCGAG GCTGCTGCTGCGCCTGTTGAGAAGTCCTAA |