© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8538.t1 |
| Gene name | |
| Location | scaffold_34:104882..106113 |
| Strand | + |
| Gene length (bp) | 1231 |
| Transcript length (bp) | 1110 |
| Coding sequence length (bp) | 1110 |
| Protein length (aa) | 370 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00295 | Glyco_hydro_28 | Glycosyl hydrolases family 28 | 9.8E-126 | 51 | 369 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004650 | polygalacturonase activity | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.47 | 0.01 | 2.93 |
| 5d_25C | Five days - 25 degrees Celsius | 4.91 | 1.13 | 8.70 |
| 7d_25C | Seven days - 25 degrees Celsius | 4.87 | 1.22 | 8.53 |
| 10d_25C | Ten days - 25 degrees Celsius | 11.12 | 4.23 | 18.01 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.07 | 0.46 | 5.68 |
| 7d_30C | Seven days - 30 degrees Celsius | 8.56 | 2.97 | 14.16 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.019886 | yes |
| 3d_25C | 7d_25C | 0.019624 | yes |
| 3d_25C | 7d_15C | 0.185872 | no |
| 3d_25C | 7d_30C | 0.001278 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.990332 | no |
| 5d_25C | 7d_15C | 0.358364 | no |
| 5d_25C | 7d_30C | 0.174937 | no |
| 5d_25C | 10d_25C | 0.032612 | yes |
| 7d_25C | 7d_15C | 0.343709 | no |
| 7d_25C | 7d_30C | 0.142592 | no |
| 7d_25C | 10d_25C | 0.020660 | yes |
| 7d_15C | 7d_30C | 0.016924 | yes |
| 7d_15C | 10d_25C | 0.002297 | yes |
| 7d_30C | 10d_25C | 0.526844 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8538.t1 MRTSFVSMLALGAAVVSAAPAPTSVSELVERSSSTCTFTSAASAIASKKACSTIVLDNIEVPAGVTLDLTKLESG TKVIFKGETTFGYKEWTGPLISISGSKIEVSGQSGHVINGGGASWWDSEGTNGGKTKPKFFYAHSLDDSSITGLN VKNTPVQAFSVQSDNLVLDQITIDNSDGDTEGGHNTDAFDVGSSTYITISNANVKNQDDCLAINSGENIVFTGGY CSGGHGLSIGSVGLRSDNTVKNVTISDSTVTNSANGVRVKTVYKATGAVSGVTFSNIKLSEISSYGIVIEQDYEN GSPTGTPTTGVPITDLTVEKVTGTVKSSATDVYILCGSGSCSDWTWSGNSVTGGKTSSKCENVPSGASC* |
| Coding | >Pro_DTO377G3_2|g8538.t1 ATGCGTACATCTTTCGTTTCCATGCTGGCCCTCGGCGCCGCCGTTGTGTCTGCTGCCCCAGCTCCTACTAGTGTT TCCGAACTGGTTGAGCGCTCGTCCTCGACTTGCACCTTTACCTCAGCCGCCAGCGCCATTGCTAGCAAGAAGGCT TGTTCCACCATTGTGCTGGATAACATCGAAGTCCCTGCTGGCGTGACTCTCGATCTTACCAAGCTGGAGAGTGGT ACCAAGGTCATCTTCAAGGGCGAAACTACCTTCGGATATAAAGAGTGGACGGGTCCCCTTATCAGCATCTCCGGC TCAAAGATTGAAGTCAGTGGACAGTCAGGCCATGTCATCAACGGCGGCGGAGCGAGCTGGTGGGACAGCGAGGGA ACCAACGGCGGAAAGACCAAGCCCAAGTTCTTCTACGCCCACTCCCTGGACGACTCGTCCATCACCGGCCTGAAC GTCAAGAACACCCCCGTCCAGGCTTTCAGTGTGCAGTCCGATAACCTGGTCCTCGACCAGATCACCATCGACAAC TCGGACGGTGATACTGAGGGCGGCCACAACACCGATGCCTTCGATGTTGGCTCGAGCACCTATATCACCATCAGC AACGCCAATGTCAAGAACCAGGATGACTGCTTGGCTATCAACTCTGGCGAGAACATCGTATTCACCGGCGGCTAC TGCTCCGGCGGTCACGGTCTCTCCATTGGCTCCGTTGGCTTGCGCTCCGACAACACTGTGAAGAACGTGACCATC TCCGACTCTACCGTGACCAACTCCGCCAACGGTGTGCGCGTCAAGACCGTCTACAAGGCCACTGGTGCAGTCTCT GGCGTGACCTTCTCCAACATCAAGCTGTCCGAGATCTCTAGCTATGGTATTGTCATCGAGCAGGATTACGAGAAC GGCAGCCCTACCGGTACCCCCACTACTGGTGTCCCCATTACCGACCTGACTGTCGAGAAGGTTACCGGCACTGTC AAGAGCAGCGCTACTGACGTCTACATTCTTTGCGGTAGCGGTAGCTGCTCTGACTGGACCTGGTCTGGAAATTCC GTCACTGGTGGTAAGACTAGCAGTAAGTGCGAGAATGTGCCTTCTGGTGCTTCTTGCTAG |
| Transcript | >Pro_DTO377G3_2|g8538.t1 ATGCGTACATCTTTCGTTTCCATGCTGGCCCTCGGCGCCGCCGTTGTGTCTGCTGCCCCAGCTCCTACTAGTGTT TCCGAACTGGTTGAGCGCTCGTCCTCGACTTGCACCTTTACCTCAGCCGCCAGCGCCATTGCTAGCAAGAAGGCT TGTTCCACCATTGTGCTGGATAACATCGAAGTCCCTGCTGGCGTGACTCTCGATCTTACCAAGCTGGAGAGTGGT ACCAAGGTCATCTTCAAGGGCGAAACTACCTTCGGATATAAAGAGTGGACGGGTCCCCTTATCAGCATCTCCGGC TCAAAGATTGAAGTCAGTGGACAGTCAGGCCATGTCATCAACGGCGGCGGAGCGAGCTGGTGGGACAGCGAGGGA ACCAACGGCGGAAAGACCAAGCCCAAGTTCTTCTACGCCCACTCCCTGGACGACTCGTCCATCACCGGCCTGAAC GTCAAGAACACCCCCGTCCAGGCTTTCAGTGTGCAGTCCGATAACCTGGTCCTCGACCAGATCACCATCGACAAC TCGGACGGTGATACTGAGGGCGGCCACAACACCGATGCCTTCGATGTTGGCTCGAGCACCTATATCACCATCAGC AACGCCAATGTCAAGAACCAGGATGACTGCTTGGCTATCAACTCTGGCGAGAACATCGTATTCACCGGCGGCTAC TGCTCCGGCGGTCACGGTCTCTCCATTGGCTCCGTTGGCTTGCGCTCCGACAACACTGTGAAGAACGTGACCATC TCCGACTCTACCGTGACCAACTCCGCCAACGGTGTGCGCGTCAAGACCGTCTACAAGGCCACTGGTGCAGTCTCT GGCGTGACCTTCTCCAACATCAAGCTGTCCGAGATCTCTAGCTATGGTATTGTCATCGAGCAGGATTACGAGAAC GGCAGCCCTACCGGTACCCCCACTACTGGTGTCCCCATTACCGACCTGACTGTCGAGAAGGTTACCGGCACTGTC AAGAGCAGCGCTACTGACGTCTACATTCTTTGCGGTAGCGGTAGCTGCTCTGACTGGACCTGGTCTGGAAATTCC GTCACTGGTGGTAAGACTAGCAGTAAGTGCGAGAATGTGCCTTCTGGTGCTTCTTGCTAG |
| Gene | >Pro_DTO377G3_2|g8538.t1 ATGCGTACATCTTTCGTTTCCATGCTGGCCCTCGGCGCCGCCGTTGTGTCTGCTGCCCCAGCTCCTACTAGTGTT TCCGAACTGGTTGAGCGCTCGTCCTCGACTTGCACCTTTACCTCAGCCGCCAGCGCCATTGCTAGCAAGAAGGCT TGTTCCACCATTGTGCTGGATAACATCGAAGTCCCTGCTGGCGTGACTCTCGATCTTACCAAGCTGGAGAGTGGT ACCAAGGTAGATATTTCTGTTATTCAAGGGTCGATAACCAAAGATCTAATAGCTGCTGTATAGGTCATCTTCAAG GGCGAAACTACCTTCGGATATAAAGAGTGGACGGGTCCCCTTATCAGCATCTCCGGCTCAAAGATTGAAGTCAGT GGACAGTCAGGCCATGTCATCAACGGCGGCGGAGCGAGCTGGTGGGACAGCGAGGGAACCAACGGCGGAAAGACC AAGCCCAAGTTCTTCTACGCCCACTCCCTGGACGACTCGTCCATCACCGGCCTGAACGTCAAGAACACCCCCGTC CAGGCTTTCAGTGTGCAGTCCGATAACCTGGTCCTCGACCAGATCACCATCGACAACTCGGACGGTGATACTGAG GGCGGCCACAACACCGATGCCTTCGATGTTGGCTCGAGCACCTATATCACCATCAGCAACGCCAATGTCAAGAAC CAGGATGACTGCTTGGCTATCAACTCTGGCGAGGTAAGCAGTCAAAGGATACTTCTACCATAAAAAAACAAATGA AACTAACCTGGTTGTCCGCCAGAACATCGTATTCACCGGCGGCTACTGCTCCGGCGGTCACGGTCTCTCCATTGG CTCCGTTGGCTTGCGCTCCGACAACACTGTGAAGAACGTGACCATCTCCGACTCTACCGTGACCAACTCCGCCAA CGGTGTGCGCGTCAAGACCGTCTACAAGGCCACTGGTGCAGTCTCTGGCGTGACCTTCTCCAACATCAAGCTGTC CGAGATCTCTAGCTATGGTATTGTCATCGAGCAGGATTACGAGAACGGCAGCCCTACCGGTACCCCCACTACTGG TGTCCCCATTACCGACCTGACTGTCGAGAAGGTTACCGGCACTGTCAAGAGCAGCGCTACTGACGTCTACATTCT TTGCGGTAGCGGTAGCTGCTCTGACTGGACCTGGTCTGGAAATTCCGTCACTGGTGGTAAGACTAGCAGTAAGTG CGAGAATGTGCCTTCTGGTGCTTCTTGCTAG |