© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8521.t1 |
| Gene name | |
| Location | scaffold_34:53127..54348 |
| Strand | + |
| Gene length (bp) | 1221 |
| Transcript length (bp) | 1005 |
| Coding sequence length (bp) | 1005 |
| Protein length (aa) | 335 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 2.4E-20 | 4 | 256 |
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 2.0E-15 | 6 | 250 |
| PF07993 | NAD_binding_4 | Male sterility protein | 7.6E-10 | 6 | 225 |
| PF16363 | GDP_Man_Dehyd | GDP-mannose 4,6 dehydratase | 2.5E-09 | 5 | 179 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0009058 | biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0008150 | biological_process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8521.t1 MVKVLLTGGSGFIAAHIIDILLQHGFDIVVTVRSEEKGKRIIEAHPDVSKEKLSYVIVNDVAKDGAFDEAVKSDP PFDYVLHTASPFHFNVQDPVKDFLDPAIKGTTGILKAIKEYAPTVKRVVITSSFAAIVNGKQHPKVYSEKEWNPV TWEEALDHSQVYRASKTFAEKAAWAFVEKEKPNFDIATINPPLVFGPIVHYLNSLEAINTSNQRIRNLIQGQMKE KIAPTGTFLWVDVRDVALAHVRAIEVPEAGGERFFVTAGFFSNKELADIARETHPELESKLPPADAPSDFPKNIY QIDNSKSQKILGLEYRPLKQTVSDTIDSLLAVGA* |
| Coding | >Pro_DTO377G3_2|g8521.t1 ATGGTTAAAGTTCTCTTGACTGGAGGCAGTGGCTTCATCGCCGCCCACATCATTGACATTCTTCTACAACATGGT TTTGATATAGTTGTTACTGTCAGATCGGAGGAGAAGGGTAAACGCATTATTGAGGCCCACCCCGATGTGTCGAAG GAGAAACTCTCTTATGTGATTGTCAACGATGTAGCTAAGGATGGTGCATTTGATGAGGCCGTCAAGTCAGACCCT CCCTTTGACTATGTGCTCCATACCGCATCTCCTTTCCATTTTAATGTTCAGGACCCCGTGAAAGACTTCCTTGAT CCAGCCATCAAGGGAACCACTGGTATTTTGAAGGCAATCAAGGAATATGCTCCTACCGTGAAGCGAGTGGTAATC ACGTCATCATTCGCTGCTATTGTGAATGGCAAGCAGCACCCCAAGGTCTACAGTGAGAAAGAATGGAATCCAGTG ACATGGGAGGAGGCGTTGGACCACTCGCAAGTTTACCGTGCTAGTAAGACCTTTGCGGAGAAAGCAGCCTGGGCC TTTGTTGAGAAGGAGAAGCCGAATTTCGATATTGCTACCATCAATCCGCCACTAGTATTTGGCCCGATAGTTCAT TATCTCAACTCCCTTGAGGCTATCAACACCTCGAACCAGCGCATCAGAAACCTCATCCAGGGTCAAATGAAGGAG AAAATAGCCCCAACGGGCACTTTTCTCTGGGTGGACGTGCGTGATGTGGCCCTCGCACATGTCAGAGCCATCGAA GTCCCCGAAGCAGGAGGCGAGAGATTCTTTGTCACCGCTGGCTTCTTCTCGAACAAGGAACTTGCGGATATTGCT CGCGAGACCCATCCCGAGTTAGAGTCTAAGCTGCCCCCTGCAGACGCTCCCAGCGACTTCCCGAAAAACATCTAT CAGATTGACAACAGTAAATCGCAAAAGATCCTTGGACTCGAGTACCGCCCACTAAAGCAGACAGTCTCAGACACC ATCGATTCTCTTCTAGCCGTCGGTGCTTAA |
| Transcript | >Pro_DTO377G3_2|g8521.t1 ATGGTTAAAGTTCTCTTGACTGGAGGCAGTGGCTTCATCGCCGCCCACATCATTGACATTCTTCTACAACATGGT TTTGATATAGTTGTTACTGTCAGATCGGAGGAGAAGGGTAAACGCATTATTGAGGCCCACCCCGATGTGTCGAAG GAGAAACTCTCTTATGTGATTGTCAACGATGTAGCTAAGGATGGTGCATTTGATGAGGCCGTCAAGTCAGACCCT CCCTTTGACTATGTGCTCCATACCGCATCTCCTTTCCATTTTAATGTTCAGGACCCCGTGAAAGACTTCCTTGAT CCAGCCATCAAGGGAACCACTGGTATTTTGAAGGCAATCAAGGAATATGCTCCTACCGTGAAGCGAGTGGTAATC ACGTCATCATTCGCTGCTATTGTGAATGGCAAGCAGCACCCCAAGGTCTACAGTGAGAAAGAATGGAATCCAGTG ACATGGGAGGAGGCGTTGGACCACTCGCAAGTTTACCGTGCTAGTAAGACCTTTGCGGAGAAAGCAGCCTGGGCC TTTGTTGAGAAGGAGAAGCCGAATTTCGATATTGCTACCATCAATCCGCCACTAGTATTTGGCCCGATAGTTCAT TATCTCAACTCCCTTGAGGCTATCAACACCTCGAACCAGCGCATCAGAAACCTCATCCAGGGTCAAATGAAGGAG AAAATAGCCCCAACGGGCACTTTTCTCTGGGTGGACGTGCGTGATGTGGCCCTCGCACATGTCAGAGCCATCGAA GTCCCCGAAGCAGGAGGCGAGAGATTCTTTGTCACCGCTGGCTTCTTCTCGAACAAGGAACTTGCGGATATTGCT CGCGAGACCCATCCCGAGTTAGAGTCTAAGCTGCCCCCTGCAGACGCTCCCAGCGACTTCCCGAAAAACATCTAT CAGATTGACAACAGTAAATCGCAAAAGATCCTTGGACTCGAGTACCGCCCACTAAAGCAGACAGTCTCAGACACC ATCGATTCTCTTCTAGCCGTCGGTGCTTAA |
| Gene | >Pro_DTO377G3_2|g8521.t1 ATGGTTAAAGTTCTCTTGACTGGTATGTGATTTTAACTTACCCTCGAGCCCAAGCTAACTATCTACTTTAGGAGG CAGTGGCTTCATCGCCGCCCACATCATTGACATTCTTCTACAACATGGGTATGCGTTAGCCAACATGAAAATACA GAGTATTGGTTGACAGTTTTACTCTAGTTTTGATATAGTTGTTACTGTCAGATCGGAGGAGAAGGGTAAACGCAT TATTGAGGCCCACCCCGATGTGTCGAAGGAGAAACTCTCTTATGTGATTGTCAACGATGTAGCTAAGGATGGTGC ATTTGATGAGGTTAGTAGAACATCGTGCCCCTGATAGATACACAACTAACGGAAAAACAACAGGCCGTCAAGTCA GACCCTCCCTTTGACTATGTGCTCCATACCGCATCTCCTTTCCATTTTAATGTTCAGGACCCCGTGAAAGACTTC CTTGATCCAGCCATCAAGGGAACCACTGGTATTTTGAAGGCAATCAAGGAATATGCTCCTACCGTGAAGCGAGTG GTAATCACGTCATCATTCGCTGCTATTGTGAATGGCAAGCAGCACCCCAAGGTCTACAGTGAGAAAGAATGGAAT CCAGTGACATGGGAGGAGGCGTTGGACCACTCGCAAGTTTACCGTGCTAGTAAGGTAAGTGATACTGGACGGTCA GCCTGAGTAAATGCAAGTGCTAAGTCAGTTCCATACCAGACCTTTGCGGAGAAAGCAGCCTGGGCCTTTGTTGAG AAGGAGAAGCCGAATTTCGATATTGCTACCATCAATCCGCCACTAGTATTTGGCCCGATAGTTCATTATCTCAAC TCCCTTGAGGCTATCAACACCTCGAACCAGCGCATCAGAAACCTCATCCAGGGTCAAATGAAGGAGAAAATAGCC CCAACGGGCACTTTTCTCTGGGTGGACGTGCGTGATGTGGCCCTCGCACATGTCAGAGCCATCGAAGTCCCCGAA GCAGGAGGCGAGAGATTCTTTGTCACCGCTGGCTTCTTCTCGAACAAGGAACTTGCGGATATTGCTCGCGAGACC CATCCCGAGTTAGAGTCTAAGCTGCCCCCTGCAGACGCTCCCAGCGACTTCCCGAAAAACATCTATCAGATTGAC AACAGTAAATCGCAAAAGATCCTTGGACTCGAGTACCGCCCACTAAAGCAGACAGTCTCAGACACCATCGATTCT CTTCTAGCCGTCGGTGCTTAA |