© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8486.t1 |
| Gene name | |
| Location | scaffold_33:200412..201651 |
| Strand | + |
| Gene length (bp) | 1239 |
| Transcript length (bp) | 1239 |
| Coding sequence length (bp) | 1239 |
| Protein length (aa) | 413 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03595 | SLAC1 | Voltage-dependent anion channel | 4.8E-84 | 56 | 391 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 77 | 19 |
| 2 | 90 | 112 | 22 |
| 3 | 127 | 149 | 22 |
| 4 | 162 | 184 | 22 |
| 5 | 194 | 216 | 22 |
| 6 | 223 | 245 | 22 |
| 7 | 265 | 287 | 22 |
| 8 | 308 | 333 | 25 |
| 9 | 343 | 365 | 22 |
| 10 | 372 | 394 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.85 | 1.81 | 9.89 |
| 5d_25C | Five days - 25 degrees Celsius | 9.12 | 3.42 | 14.83 |
| 7d_25C | Seven days - 25 degrees Celsius | 12.15 | 4.98 | 19.33 |
| 10d_25C | Ten days - 25 degrees Celsius | 22.56 | 10.96 | 34.16 |
| 7d_15C | Seven days - 15 degrees Celsius | 7.49 | 2.59 | 12.39 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.65 | 4.73 | 18.57 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.256929 | no |
| 3d_25C | 7d_25C | 0.034125 | yes |
| 3d_25C | 7d_15C | 0.579359 | no |
| 3d_25C | 7d_30C | 0.047323 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.465505 | no |
| 5d_25C | 7d_15C | 0.660402 | no |
| 5d_25C | 7d_30C | 0.562341 | no |
| 5d_25C | 10d_25C | 0.003625 | yes |
| 7d_25C | 7d_15C | 0.164015 | no |
| 7d_25C | 7d_30C | 0.935439 | no |
| 7d_25C | 10d_25C | 0.034793 | yes |
| 7d_15C | 7d_30C | 0.222448 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.030863 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 4727 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8486.t1 MSNPVLLGVYPNHSQELQPPSAPPSAPPSAHSETPFMESEKYQKQYPLSFRDRLRHFTWAWYTLTMSAGGLALLI ANQPNKFTGYHEIGLAIYLINLVLFSLVCSLMAARFIIHGGALNSLRHEREGLFFPTFWLSAATLITGLEKYFGE NPAPSFTATLEVLFWIYCFCTFTLAVVQYSFVFTSHTYRLQTMMPSWILPAFPIMLSGTIASVIAKSQPARAAIP IVTAGMTFQGLGFCISFMMYSHYIGRLMESGLPCREHRPAMFICVGPPAFTALALVGMAQGLPATFNVMGSEDTT ADGRMLEILALAAGAFLWALSFWFFCVAAIAVIRAPPTSFHLSWWAMVFPNTGFTIATITLGNAFDSSAIKGVGS AMTICIVCMFLFVFVNHGLAVYRQDIMYPGKDEDTSD* |
| Coding | >Pro_DTO377G3_2|g8486.t1 ATGTCCAACCCAGTTCTACTAGGGGTCTACCCTAACCACAGCCAAGAGCTTCAGCCTCCATCTGCACCGCCGTCT GCACCGCCGTCTGCTCACTCCGAAACACCCTTCATGGAATCAGAGAAGTACCAGAAGCAGTACCCACTGAGCTTC CGCGATCGTCTCCGCCATTTCACATGGGCATGGTACACCCTCACCATGAGCGCAGGAGGCCTCGCCCTTCTTATA GCGAACCAGCCGAACAAGTTCACAGGCTACCACGAGATCGGCCTAGCCATCTATCTGATCAACCTCGTCCTCTTC TCCCTCGTCTGCTCTCTCATGGCAGCGCGATTCATAATCCACGGCGGCGCCCTCAACTCCCTCCGCCACGAACGC GAGGGCCTCTTCTTCCCAACCTTCTGGCTCTCCGCCGCAACACTGATCACCGGCCTGGAGAAGTACTTCGGCGAG AACCCCGCCCCATCCTTCACAGCCACACTCGAAGTCCTCTTCTGGATATACTGCTTCTGCACATTCACTCTCGCC GTTGTACAATACTCCTTCGTCTTCACCTCGCACACCTACCGCCTGCAAACAATGATGCCCTCGTGGATCCTCCCC GCGTTCCCAATTATGCTAAGCGGGACGATCGCGTCTGTAATCGCCAAAAGCCAGCCCGCGCGCGCAGCAATCCCA ATCGTCACTGCCGGAATGACCTTCCAAGGTCTAGGCTTCTGCATCTCCTTCATGATGTACTCGCACTACATCGGC CGGCTGATGGAGAGCGGACTTCCATGTCGGGAACACAGACCGGCGATGTTCATCTGCGTTGGACCACCAGCGTTC ACCGCGCTTGCTCTCGTGGGTATGGCGCAGGGACTGCCTGCGACGTTCAACGTGATGGGCAGTGAGGACACTACT GCCGACGGGCGGATGCTGGAGATTCTGGCGTTGGCGGCAGGCGCGTTCTTGTGGGCGCTGAGCTTTTGGTTCTTC TGTGTCGCTGCTATTGCGGTTATTCGGGCGCCGCCGACGAGCTTCCATCTCAGCTGGTGGGCGATGGTTTTCCCG AATACTGGGTTTACGATTGCGACCATTACGCTTGGAAATGCGTTTGACAGCTCCGCGATTAAGGGCGTTGGCTCT GCGATGACTATCTGCATCGTCTGCATGTTCCTCTTCGTCTTTGTCAACCATGGTCTTGCAGTCTATCGCCAGGAT ATTATGTATCCTGGTAAAGATGAGGATACCTCGGATTGA |
| Transcript | >Pro_DTO377G3_2|g8486.t1 ATGTCCAACCCAGTTCTACTAGGGGTCTACCCTAACCACAGCCAAGAGCTTCAGCCTCCATCTGCACCGCCGTCT GCACCGCCGTCTGCTCACTCCGAAACACCCTTCATGGAATCAGAGAAGTACCAGAAGCAGTACCCACTGAGCTTC CGCGATCGTCTCCGCCATTTCACATGGGCATGGTACACCCTCACCATGAGCGCAGGAGGCCTCGCCCTTCTTATA GCGAACCAGCCGAACAAGTTCACAGGCTACCACGAGATCGGCCTAGCCATCTATCTGATCAACCTCGTCCTCTTC TCCCTCGTCTGCTCTCTCATGGCAGCGCGATTCATAATCCACGGCGGCGCCCTCAACTCCCTCCGCCACGAACGC GAGGGCCTCTTCTTCCCAACCTTCTGGCTCTCCGCCGCAACACTGATCACCGGCCTGGAGAAGTACTTCGGCGAG AACCCCGCCCCATCCTTCACAGCCACACTCGAAGTCCTCTTCTGGATATACTGCTTCTGCACATTCACTCTCGCC GTTGTACAATACTCCTTCGTCTTCACCTCGCACACCTACCGCCTGCAAACAATGATGCCCTCGTGGATCCTCCCC GCGTTCCCAATTATGCTAAGCGGGACGATCGCGTCTGTAATCGCCAAAAGCCAGCCCGCGCGCGCAGCAATCCCA ATCGTCACTGCCGGAATGACCTTCCAAGGTCTAGGCTTCTGCATCTCCTTCATGATGTACTCGCACTACATCGGC CGGCTGATGGAGAGCGGACTTCCATGTCGGGAACACAGACCGGCGATGTTCATCTGCGTTGGACCACCAGCGTTC ACCGCGCTTGCTCTCGTGGGTATGGCGCAGGGACTGCCTGCGACGTTCAACGTGATGGGCAGTGAGGACACTACT GCCGACGGGCGGATGCTGGAGATTCTGGCGTTGGCGGCAGGCGCGTTCTTGTGGGCGCTGAGCTTTTGGTTCTTC TGTGTCGCTGCTATTGCGGTTATTCGGGCGCCGCCGACGAGCTTCCATCTCAGCTGGTGGGCGATGGTTTTCCCG AATACTGGGTTTACGATTGCGACCATTACGCTTGGAAATGCGTTTGACAGCTCCGCGATTAAGGGCGTTGGCTCT GCGATGACTATCTGCATCGTCTGCATGTTCCTCTTCGTCTTTGTCAACCATGGTCTTGCAGTCTATCGCCAGGAT ATTATGTATCCTGGTAAAGATGAGGATACCTCGGATTGA |
| Gene | >Pro_DTO377G3_2|g8486.t1 ATGTCCAACCCAGTTCTACTAGGGGTCTACCCTAACCACAGCCAAGAGCTTCAGCCTCCATCTGCACCGCCGTCT GCACCGCCGTCTGCTCACTCCGAAACACCCTTCATGGAATCAGAGAAGTACCAGAAGCAGTACCCACTGAGCTTC CGCGATCGTCTCCGCCATTTCACATGGGCATGGTACACCCTCACCATGAGCGCAGGAGGCCTCGCCCTTCTTATA GCGAACCAGCCGAACAAGTTCACAGGCTACCACGAGATCGGCCTAGCCATCTATCTGATCAACCTCGTCCTCTTC TCCCTCGTCTGCTCTCTCATGGCAGCGCGATTCATAATCCACGGCGGCGCCCTCAACTCCCTCCGCCACGAACGC GAGGGCCTCTTCTTCCCAACCTTCTGGCTCTCCGCCGCAACACTGATCACCGGCCTGGAGAAGTACTTCGGCGAG AACCCCGCCCCATCCTTCACAGCCACACTCGAAGTCCTCTTCTGGATATACTGCTTCTGCACATTCACTCTCGCC GTTGTACAATACTCCTTCGTCTTCACCTCGCACACCTACCGCCTGCAAACAATGATGCCCTCGTGGATCCTCCCC GCGTTCCCAATTATGCTAAGCGGGACGATCGCGTCTGTAATCGCCAAAAGCCAGCCCGCGCGCGCAGCAATCCCA ATCGTCACTGCCGGAATGACCTTCCAAGGTCTAGGCTTCTGCATCTCCTTCATGATGTACTCGCACTACATCGGC CGGCTGATGGAGAGCGGACTTCCATGTCGGGAACACAGACCGGCGATGTTCATCTGCGTTGGACCACCAGCGTTC ACCGCGCTTGCTCTCGTGGGTATGGCGCAGGGACTGCCTGCGACGTTCAACGTGATGGGCAGTGAGGACACTACT GCCGACGGGCGGATGCTGGAGATTCTGGCGTTGGCGGCAGGCGCGTTCTTGTGGGCGCTGAGCTTTTGGTTCTTC TGTGTCGCTGCTATTGCGGTTATTCGGGCGCCGCCGACGAGCTTCCATCTCAGCTGGTGGGCGATGGTTTTCCCG AATACTGGGTTTACGATTGCGACCATTACGCTTGGAAATGCGTTTGACAGCTCCGCGATTAAGGGCGTTGGCTCT GCGATGACTATCTGCATCGTCTGCATGTTCCTCTTCGTCTTTGTCAACCATGGTCTTGCAGTCTATCGCCAGGAT ATTATGTATCCTGGTAAAGATGAGGATACCTCGGATTGA |