© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8474.t1 |
| Gene name | |
| Location | scaffold_33:172109..173231 |
| Strand | - |
| Gene length (bp) | 1122 |
| Transcript length (bp) | 1122 |
| Coding sequence length (bp) | 1122 |
| Protein length (aa) | 374 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02678 | Pirin | Pirin | 1.8E-30 | 94 | 192 |
| PF05726 | Pirin_C | Pirin C-terminal cupin domain | 7.8E-24 | 249 | 356 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 38.24 | 20.69 | 55.78 |
| 5d_25C | Five days - 25 degrees Celsius | 36.39 | 19.54 | 53.23 |
| 7d_25C | Seven days - 25 degrees Celsius | 41.34 | 22.58 | 60.09 |
| 10d_25C | Ten days - 25 degrees Celsius | 186.52 | 78.10 | 294.94 |
| 7d_15C | Seven days - 15 degrees Celsius | 40.91 | 22.50 | 59.31 |
| 7d_30C | Seven days - 30 degrees Celsius | 33.23 | 17.45 | 49.02 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.901593 | no |
| 3d_25C | 7d_25C | 0.826364 | no |
| 3d_25C | 7d_15C | 0.856287 | no |
| 3d_25C | 7d_30C | 0.673405 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.691819 | no |
| 5d_25C | 7d_15C | 0.725145 | no |
| 5d_25C | 7d_30C | 0.797823 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.981601 | no |
| 7d_25C | 7d_30C | 0.453041 | no |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.484599 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 4738 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8474.t1 MKLLLPLLICITAIFLAYNPSIKDSLKDSLVSFIQQQAPSLSEHLQTKNIVNQTNHHLNLETPTPTVFPITDMSV PRAIRQAFLAIEQAEGAGARVRRSIGTAKLRNFSPFLMLDHFTIGKGAGFPDHPHRGQETITYLLSGGVDHEDFA GNKGTIGPGDLQFMTAGRGIMHAEMPHENEDGSPNVGMQLWVDLPQKLKFCEPRYRDLRAEEIPLATVDEGRVKI KVISGQSHGVDSVRDLAYTPVWILDITIKPGGRISQPLPQGWNSFAYTLAGETVFGSNDSTRIVKEFTNVQFEQT GDFVELSVPDNAEKDARIFLVAGQPLDQKVVQYGPFVLNTQDEVYQAMLDYQTASNGFERSRNWQSEIGKRMG* |
| Coding | >Pro_DTO377G3_2|g8474.t1 ATGAAACTACTTCTGCCACTTTTAATTTGTATCACAGCAATCTTCCTTGCCTATAACCCTTCTATCAAAGACTCT CTCAAGGACTCTTTGGTCTCATTTATCCAGCAACAAGCTCCTAGCCTGTCAGAGCACCTTCAGACCAAAAACATT GTCAATCAGACAAACCACCACCTGAACCTGGAAACCCCGACGCCCACAGTCTTCCCCATCACAGACATGTCCGTC CCTCGCGCTATCCGACAGGCATTCCTTGCCATCGAGCAAGCAGAAGGCGCAGGTGCCCGTGTGCGCCGCTCTATC GGAACTGCCAAGCTCCGCAACTTCAGTCCCTTCCTCATGCTTGACCACTTCACGATCGGTAAGGGCGCTGGCTTC CCAGACCACCCTCACCGCGGTCAAGAGACCATCACCTATTTGTTGTCCGGCGGCGTTGACCATGAAGACTTTGCC GGTAACAAGGGAACTATCGGACCCGGCGATCTGCAATTCATGACCGCAGGCCGCGGTATCATGCATGCTGAGATG CCCCACGAGAACGAAGACGGTAGCCCAAATGTCGGTATGCAGTTGTGGGTCGATCTGCCCCAGAAGCTGAAATTC TGTGAGCCTCGTTACCGTGATCTTCGCGCTGAGGAGATTCCCCTCGCGACAGTCGATGAGGGCCGCGTCAAGATC AAGGTCATCTCGGGCCAGTCGCACGGTGTTGACTCCGTGCGTGACTTGGCCTACACCCCTGTCTGGATCTTGGAT ATCACGATCAAGCCCGGTGGTCGTATATCGCAGCCCCTACCACAGGGATGGAACTCATTTGCTTACACCTTGGCT GGTGAGACTGTCTTTGGCTCGAATGATTCCACTCGCATCGTGAAGGAATTCACAAACGTTCAATTCGAGCAGACT GGTGACTTTGTTGAACTCTCTGTCCCGGATAACGCCGAGAAGGATGCCCGCATTTTCCTTGTGGCTGGTCAGCCA CTGGACCAGAAGGTTGTTCAGTATGGACCTTTTGTACTGAACACTCAGGATGAGGTTTACCAGGCGATGCTCGAC TACCAGACCGCCTCCAATGGATTTGAGAGGTCTCGAAACTGGCAGAGTGAGATTGGCAAGAGAATGGGATAA |
| Transcript | >Pro_DTO377G3_2|g8474.t1 ATGAAACTACTTCTGCCACTTTTAATTTGTATCACAGCAATCTTCCTTGCCTATAACCCTTCTATCAAAGACTCT CTCAAGGACTCTTTGGTCTCATTTATCCAGCAACAAGCTCCTAGCCTGTCAGAGCACCTTCAGACCAAAAACATT GTCAATCAGACAAACCACCACCTGAACCTGGAAACCCCGACGCCCACAGTCTTCCCCATCACAGACATGTCCGTC CCTCGCGCTATCCGACAGGCATTCCTTGCCATCGAGCAAGCAGAAGGCGCAGGTGCCCGTGTGCGCCGCTCTATC GGAACTGCCAAGCTCCGCAACTTCAGTCCCTTCCTCATGCTTGACCACTTCACGATCGGTAAGGGCGCTGGCTTC CCAGACCACCCTCACCGCGGTCAAGAGACCATCACCTATTTGTTGTCCGGCGGCGTTGACCATGAAGACTTTGCC GGTAACAAGGGAACTATCGGACCCGGCGATCTGCAATTCATGACCGCAGGCCGCGGTATCATGCATGCTGAGATG CCCCACGAGAACGAAGACGGTAGCCCAAATGTCGGTATGCAGTTGTGGGTCGATCTGCCCCAGAAGCTGAAATTC TGTGAGCCTCGTTACCGTGATCTTCGCGCTGAGGAGATTCCCCTCGCGACAGTCGATGAGGGCCGCGTCAAGATC AAGGTCATCTCGGGCCAGTCGCACGGTGTTGACTCCGTGCGTGACTTGGCCTACACCCCTGTCTGGATCTTGGAT ATCACGATCAAGCCCGGTGGTCGTATATCGCAGCCCCTACCACAGGGATGGAACTCATTTGCTTACACCTTGGCT GGTGAGACTGTCTTTGGCTCGAATGATTCCACTCGCATCGTGAAGGAATTCACAAACGTTCAATTCGAGCAGACT GGTGACTTTGTTGAACTCTCTGTCCCGGATAACGCCGAGAAGGATGCCCGCATTTTCCTTGTGGCTGGTCAGCCA CTGGACCAGAAGGTTGTTCAGTATGGACCTTTTGTACTGAACACTCAGGATGAGGTTTACCAGGCGATGCTCGAC TACCAGACCGCCTCCAATGGATTTGAGAGGTCTCGAAACTGGCAGAGTGAGATTGGCAAGAGAATGGGATAA |
| Gene | >Pro_DTO377G3_2|g8474.t1 ATGAAACTACTTCTGCCACTTTTAATTTGTATCACAGCAATCTTCCTTGCCTATAACCCTTCTATCAAAGACTCT CTCAAGGACTCTTTGGTCTCATTTATCCAGCAACAAGCTCCTAGCCTGTCAGAGCACCTTCAGACCAAAAACATT GTCAATCAGACAAACCACCACCTGAACCTGGAAACCCCGACGCCCACAGTCTTCCCCATCACAGACATGTCCGTC CCTCGCGCTATCCGACAGGCATTCCTTGCCATCGAGCAAGCAGAAGGCGCAGGTGCCCGTGTGCGCCGCTCTATC GGAACTGCCAAGCTCCGCAACTTCAGTCCCTTCCTCATGCTTGACCACTTCACGATCGGTAAGGGCGCTGGCTTC CCAGACCACCCTCACCGCGGTCAAGAGACCATCACCTATTTGTTGTCCGGCGGCGTTGACCATGAAGACTTTGCC GGTAACAAGGGAACTATCGGACCCGGCGATCTGCAATTCATGACCGCAGGCCGCGGTATCATGCATGCTGAGATG CCCCACGAGAACGAAGACGGTAGCCCAAATGTCGGTATGCAGTTGTGGGTCGATCTGCCCCAGAAGCTGAAATTC TGTGAGCCTCGTTACCGTGATCTTCGCGCTGAGGAGATTCCCCTCGCGACAGTCGATGAGGGCCGCGTCAAGATC AAGGTCATCTCGGGCCAGTCGCACGGTGTTGACTCCGTGCGTGACTTGGCCTACACCCCTGTCTGGATCTTGGAT ATCACGATCAAGCCCGGTGGTCGTATATCGCAGCCCCTACCACAGGGATGGAACTCATTTGCTTACACCTTGGCT GGTGAGACTGTCTTTGGCTCGAATGATTCCACTCGCATCGTGAAGGAATTCACAAACGTTCAATTCGAGCAGACT GGTGACTTTGTTGAACTCTCTGTCCCGGATAACGCCGAGAAGGATGCCCGCATTTTCCTTGTGGCTGGTCAGCCA CTGGACCAGAAGGTTGTTCAGTATGGACCTTTTGTACTGAACACTCAGGATGAGGTTTACCAGGCGATGCTCGAC TACCAGACCGCCTCCAATGGATTTGAGAGGTCTCGAAACTGGCAGAGTGAGATTGGCAAGAGAATGGGATAA |