© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8469.t1 |
| Gene name | |
| Location | scaffold_33:153540..156153 |
| Strand | - |
| Gene length (bp) | 2613 |
| Transcript length (bp) | 2007 |
| Coding sequence length (bp) | 2007 |
| Protein length (aa) | 669 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04146 | YTH | YT521-B-like domain | 7.1E-61 | 467 | 656 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.3E-06 | 324 | 386 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 33.27 | 19.67 | 46.87 |
| 5d_25C | Five days - 25 degrees Celsius | 31.06 | 18.20 | 43.92 |
| 7d_25C | Seven days - 25 degrees Celsius | 33.88 | 19.96 | 47.80 |
| 10d_25C | Ten days - 25 degrees Celsius | 69.94 | 42.65 | 97.23 |
| 7d_15C | Seven days - 15 degrees Celsius | 12.39 | 6.05 | 18.73 |
| 7d_30C | Seven days - 30 degrees Celsius | 102.38 | 61.75 | 143.02 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.834345 | no |
| 3d_25C | 7d_25C | 0.961507 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.776759 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.082307 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8469.t1 MYLNSVLFPGMPSTSSPSSGMCWLSVSLKLPLSLVPSPLSTVAYLESLYMWKSYLRRWDFYKNSYTAVTSGLRDL VFRRLQLKVSSTAPWAMFLQTRQLTRQPRYQNRVHLLLQRHVPMSHIIPASQKLGHHPQGYNPQSMHQYTAHGQG MMYPMPMTPYGHNSGGMPYGMSYPAYPPYAIPQHPGPQPQHHYPPHGTQMQNMPNLNPGQVSPYSSGYYPHSSYG PYGHGVPAGQMPQAISPVRTNTSSPSKPVTLRKEADKRMTDLEYDVSKTIVDGSNPKKIAQSQPQPPFSNNTPPS QPLPTAPSTPRGPPRKPKQSGHALWVGNLPPGASVIDLKDHFSQDAKNDIESVFLISKSNCAFVNYKSAAACVAA LARFHDSRFQGVRVVCRLRKGLTAPGSGSAAPNNALRPRPEDNATATTTITTATTTATTTATDPGEDHSITPEPG SAAPATGNHPPPARLVDRYFIVKSLTVEDLELSKQSGIWATQSHNEAAMNQAFENTDYVYLIFSANKSGEYFGYA RMMSPISDDEELALEMPSRPDPPPGGPDELDVTLTAATSTAPQGRIIDDSVRGTIFWEVESSEDENDNASEKSVE PEDPEEGQTFGKPFRIQWISTERVPFQRTRGLRNPWNANREIKIARDGTEIEPTIGLPAVIKSFFDGL* |
| Coding | >Pro_DTO377G3_2|g8469.t1 ATGTACCTGAATTCAGTACTCTTCCCTGGCATGCCTAGCACTTCTTCCCCCTCCTCTGGCATGTGTTGGCTGTCA GTTAGCCTTAAGCTTCCCCTGTCTCTGGTACCTAGCCCACTGTCCACCGTGGCTTATCTAGAATCCCTTTATATG TGGAAGTCTTACTTGCGTCGGTGGGATTTCTATAAGAATTCCTACACCGCGGTGACATCCGGGCTACGTGACTTA GTTTTCAGAAGGTTACAATTGAAAGTTTCATCAACGGCCCCATGGGCAATGTTCCTTCAGACAAGACAGCTGACG AGACAGCCCCGATATCAGAACAGGGTGCATCTCCTACTTCAGCGCCACGTCCCAATGTCACACATCATTCCAGCT TCGCAGAAGCTCGGCCATCATCCACAAGGCTATAATCCGCAGTCAATGCATCAGTACACAGCCCACGGGCAAGGC ATGATGTACCCCATGCCAATGACTCCGTATGGACACAACTCCGGAGGCATGCCGTATGGCATGTCTTACCCTGCT TATCCGCCGTATGCCATCCCTCAACACCCTGGCCCTCAACCTCAACATCATTACCCGCCTCATGGAACCCAAATG CAAAACATGCCAAACCTCAATCCCGGGCAAGTATCTCCGTATAGCTCGGGCTATTACCCTCATTCATCATACGGC CCTTATGGACATGGAGTGCCTGCCGGCCAAATGCCTCAGGCTATATCTCCAGTACGTACTAACACCAGTTCACCC TCGAAACCGGTCACCTTGCGCAAAGAAGCCGATAAACGAATGACGGATCTGGAGTACGACGTTTCAAAGACCATC GTGGATGGATCGAACCCCAAAAAAATAGCGCAGTCCCAACCACAACCGCCGTTCTCCAACAATACTCCCCCTTCG CAACCACTCCCGACCGCTCCGAGTACCCCACGAGGACCACCCCGAAAGCCCAAGCAATCTGGCCACGCGCTGTGG GTTGGAAATCTTCCTCCCGGAGCCAGTGTCATTGATCTCAAAGATCACTTCTCGCAAGATGCAAAAAACGACATT GAGAGCGTGTTCCTGATCTCCAAGAGTAATTGTGCGTTTGTGAATTACAAGTCGGCTGCCGCCTGCGTTGCAGCT TTGGCGAGATTTCACGACTCCCGATTTCAGGGCGTCCGCGTTGTCTGCCGACTGCGAAAGGGGCTCACTGCTCCG GGCTCCGGGTCTGCAGCTCCGAATAATGCTCTCCGACCACGTCCGGAGGATAATGCTACGGCTACGACTACGATT ACGACAGCTACGACTACTGCTACGACTACTGCTACGGACCCGGGCGAGGACCATTCAATCACACCGGAGCCCGGT TCCGCAGCGCCTGCTACGGGGAACCATCCTCCCCCGGCCCGGCTGGTAGATCGGTACTTTATTGTTAAGAGCTTG ACAGTGGAGGATCTCGAGTTGAGCAAGCAAAGTGGCATTTGGGCTACACAGTCGCACAACGAGGCGGCAATGAAT CAGGCTTTCGAGAACACAGATTACGTTTATTTAATTTTCTCCGCCAACAAATCTGGCGAATATTTTGGATACGCC CGTATGATGTCGCCGATCAGCGACGACGAAGAACTGGCCTTGGAGATGCCATCTCGGCCCGATCCCCCGCCCGGC GGGCCCGACGAACTTGACGTGACCCTGACAGCGGCAACTTCGACAGCGCCCCAAGGACGAATCATCGATGATTCA GTGCGGGGTACTATCTTCTGGGAGGTCGAGTCATCGGAAGATGAGAACGACAATGCGAGCGAGAAAAGCGTCGAG CCCGAGGATCCAGAAGAGGGTCAAACCTTTGGCAAACCGTTCCGCATTCAATGGATTTCGACAGAGCGAGTACCT TTCCAGCGCACTCGAGGCCTTCGTAACCCTTGGAATGCGAATCGGGAAATCAAAATCGCTCGTGACGGTACCGAA ATTGAGCCAACGATCGGGCTTCCTGCGGTTATCAAGAGCTTCTTTGATGGTCTATGA |
| Transcript | >Pro_DTO377G3_2|g8469.t1 ATGTACCTGAATTCAGTACTCTTCCCTGGCATGCCTAGCACTTCTTCCCCCTCCTCTGGCATGTGTTGGCTGTCA GTTAGCCTTAAGCTTCCCCTGTCTCTGGTACCTAGCCCACTGTCCACCGTGGCTTATCTAGAATCCCTTTATATG TGGAAGTCTTACTTGCGTCGGTGGGATTTCTATAAGAATTCCTACACCGCGGTGACATCCGGGCTACGTGACTTA GTTTTCAGAAGGTTACAATTGAAAGTTTCATCAACGGCCCCATGGGCAATGTTCCTTCAGACAAGACAGCTGACG AGACAGCCCCGATATCAGAACAGGGTGCATCTCCTACTTCAGCGCCACGTCCCAATGTCACACATCATTCCAGCT TCGCAGAAGCTCGGCCATCATCCACAAGGCTATAATCCGCAGTCAATGCATCAGTACACAGCCCACGGGCAAGGC ATGATGTACCCCATGCCAATGACTCCGTATGGACACAACTCCGGAGGCATGCCGTATGGCATGTCTTACCCTGCT TATCCGCCGTATGCCATCCCTCAACACCCTGGCCCTCAACCTCAACATCATTACCCGCCTCATGGAACCCAAATG CAAAACATGCCAAACCTCAATCCCGGGCAAGTATCTCCGTATAGCTCGGGCTATTACCCTCATTCATCATACGGC CCTTATGGACATGGAGTGCCTGCCGGCCAAATGCCTCAGGCTATATCTCCAGTACGTACTAACACCAGTTCACCC TCGAAACCGGTCACCTTGCGCAAAGAAGCCGATAAACGAATGACGGATCTGGAGTACGACGTTTCAAAGACCATC GTGGATGGATCGAACCCCAAAAAAATAGCGCAGTCCCAACCACAACCGCCGTTCTCCAACAATACTCCCCCTTCG CAACCACTCCCGACCGCTCCGAGTACCCCACGAGGACCACCCCGAAAGCCCAAGCAATCTGGCCACGCGCTGTGG GTTGGAAATCTTCCTCCCGGAGCCAGTGTCATTGATCTCAAAGATCACTTCTCGCAAGATGCAAAAAACGACATT GAGAGCGTGTTCCTGATCTCCAAGAGTAATTGTGCGTTTGTGAATTACAAGTCGGCTGCCGCCTGCGTTGCAGCT TTGGCGAGATTTCACGACTCCCGATTTCAGGGCGTCCGCGTTGTCTGCCGACTGCGAAAGGGGCTCACTGCTCCG GGCTCCGGGTCTGCAGCTCCGAATAATGCTCTCCGACCACGTCCGGAGGATAATGCTACGGCTACGACTACGATT ACGACAGCTACGACTACTGCTACGACTACTGCTACGGACCCGGGCGAGGACCATTCAATCACACCGGAGCCCGGT TCCGCAGCGCCTGCTACGGGGAACCATCCTCCCCCGGCCCGGCTGGTAGATCGGTACTTTATTGTTAAGAGCTTG ACAGTGGAGGATCTCGAGTTGAGCAAGCAAAGTGGCATTTGGGCTACACAGTCGCACAACGAGGCGGCAATGAAT CAGGCTTTCGAGAACACAGATTACGTTTATTTAATTTTCTCCGCCAACAAATCTGGCGAATATTTTGGATACGCC CGTATGATGTCGCCGATCAGCGACGACGAAGAACTGGCCTTGGAGATGCCATCTCGGCCCGATCCCCCGCCCGGC GGGCCCGACGAACTTGACGTGACCCTGACAGCGGCAACTTCGACAGCGCCCCAAGGACGAATCATCGATGATTCA GTGCGGGGTACTATCTTCTGGGAGGTCGAGTCATCGGAAGATGAGAACGACAATGCGAGCGAGAAAAGCGTCGAG CCCGAGGATCCAGAAGAGGGTCAAACCTTTGGCAAACCGTTCCGCATTCAATGGATTTCGACAGAGCGAGTACCT TTCCAGCGCACTCGAGGCCTTCGTAACCCTTGGAATGCGAATCGGGAAATCAAAATCGCTCGTGACGGTACCGAA ATTGAGCCAACGATCGGGCTTCCTGCGGTTATCAAGAGCTTCTTTGATGGTCTATGA |
| Gene | >Pro_DTO377G3_2|g8469.t1 ATGTACCTGAATTCAGTACTCTTCCCTGGCATGCCTAGCACTTCTTCCCCCTCCTCTGGCATGTGTTGGCTGTCA GTTAGCCTTAAGCTTCCCCTGTCTCTGGTACCTAGCCCACTGTCCACCGTGGCTTATCTAGAATCCCTTTATATG TGTTTGTCCTACTTTGTTTTGTGAGCTTCGGCTTATGGCCTAACAGGAGGGGGGTCAGTCCGTGTTGACCGGTTT TCTTCCCCTTTCAATTTCTTACCATCACACACACATTCTATCCTTGATATTTTCTTCACAAAATCCGGAGAACTA ACTTGCATGGCTTGGGCCTTTTCCTTCCCGGATTAGATCTTTGCACTTCCCCTCTTCTACGGTGTTCTGTTCTGT TCTGTTCTATTCTACCGGACTCTTAGGGAAGTCTTACTTGCGTCGGTGGGATTTCTATAAGAATTCCTACACCGC GGTGACATCCGGGCTACGTGACTTAGGTAAGGAAAAGGTCTCGAGTAAGATGTGTCCATTCCCTACAGACACTAA AGACCCAGTAGTTTTCAGAAGGTTACAATTGAAAGTTTCATCAACGGCCCCATGGGCAATGTTCCTTCAGACAAG ACAGCTGACGAGACAGCCCCGATATCAGAACAGGGTTAGCCCTTCCTTTTCAAATGCCGTCCAAGCTTTGCCTGA CTAAATCTCTTCTCAGGTGCATCTCCTACTTCAGCGCCACGTCCCAATGTCACACATCATTCCAGCTTCGCAGAA GCTCGGTATGGAACCGCCCCCTCTCCCTTAAATATGGTCATGGGATACAACTTCCCAGGCCATCATCCACAAGGC TATAATCCGCAGTCAATGCATCAGTACACAGCCCACGGGCAAGGCATGATGTACCCCATGCCAATGACTCCGTAT GGACACAACTCCGGAGGCATGCCGTATGGCATGTCTTACCCTGCTTATCCGCCGTATGCCATCCCTCAACACCCT GGCCCTCAACCTCAACATCATTACCCGCCTCATGGAACCCAAATGCAAAACATGCCAAACCTCAATCCCGGGCAA GTATCTCCGTATAGCTCGGGCTATTACCCTCATTCATCATACGGCCCTTATGGACATGGAGTGCCTGCCGGCCAA ATGCCTCAGGCTATATCTCCAGTACGTACTAACACCAGTTCACCCTCGAAACCGGTCACCTTGCGCAAAGAAGCC GATAAACGAATGACGGATCTGGAGTACGACGTTTCAAAGACCATCGTGGATGGATCGAACCCCAAAAAAATAGCG CAGTCCCAACCACAACCGCCGTTCTCCAGTGAGCTCTTGTCGAATCCCCTCACTTTGCAACTGTTACTAACCTGC ATTCATCTAAAGACAATACTCCCCCTTCGCAACCACTCCCGACCGCTCCGAGTACCCCACGAGGACCACCCCGAA AGCCCAAGCAATCTGGCCACGCGCTGTGGGTTGGAAATCTTCCTCCCGGAGCCAGTGTCATTGATCTCAAAGATC ACTTCTCGCAAGATGCAAAAAACGACATTGAGAGCGTGTTCCTGATCTCCAAGAGTAATTGTGCGTTTGTGAATT ACAAGTCGGCTGCCGCCTGCGTTGCAGCTTTGGCGAGATTTCACGACTCCCGATTTCAGGGCGTCCGCGTTGTCT GCCGACTGCGAAAGGGGCTCACTGCTCCGGGCTCCGGGTCTGCAGCTCCGAATAATGCTCTCCGACCACGTCCGG AGGATAATGCTACGGCTACGACTACGATTACGACAGCTACGACTACTGCTACGACTACTGCTACGGACCCGGGCG AGGACCATTCAATCACACCGGAGCCCGGTTCCGCAGCGCCTGCTACGGGGAACCATCCTCCCCCGGCCCGGCTGG TAGATCGGTACTTTATTGTTAAGAGCTTGACAGTGGAGGATCTCGAGTTGAGCAAGCAAAGTGGCATTTGGGCTA CACAGTCGCACAACGAGGCGGCAATGAATCAGGCTTTCGAGGTGAGTCCAAAGCTATGTAGCCCAGCAATGACCG AAACTGACCTTTACCCAGAACACAGATTACGTTTATTTAATTTTCTCCGCCAACAAATCTGGCGAATATTTTGGA TACGCCCGTATGATGTCGCCGATCAGCGACGACGAAGAACTGGCCTTGGAGATGCCATCTCGGCCCGATCCCCCG CCCGGCGGGCCCGACGAACTTGACGTGACCCTGACAGCGGCAACTTCGACAGCGCCCCAAGGACGAATCATCGAT GATTCAGTGCGGGGTACTATCTTCTGGGAGGTCGAGTCATCGGAAGATGAGAACGACAATGCGAGCGAGAAAAGC GTCGAGCCCGAGGATCCAGAAGAGGGTCAAACCTTTGGCAAACCGTTCCGCATTCAATGGATTTCGACAGAGCGA GTACCTTTCCAGCGCACTCGAGGCCTTCGTAACCCTTGGAATGCGAATCGGGAAATCAAAATCGCTCGTGACGGT ACCGAAATTGAGCCAACGATCGGGCGTAAGCTGATTCAGTTGTTTCATTTGCCTTGAGTTCCTGATTTCTTATCA TGTGGATGATCTCCTCTGTCTTTAGTTCCTGCGGTTATCAAGAGCTTCTTTGATGGTCTATGA |