© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8436.t1 |
| Gene name | |
| Location | scaffold_32:218664..219551 |
| Strand | - |
| Gene length (bp) | 887 |
| Transcript length (bp) | 762 |
| Coding sequence length (bp) | 762 |
| Protein length (aa) | 254 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13417 | GST_N_3 | Glutathione S-transferase, N-terminal domain | 6.2E-06 | 32 | 107 |
| PF00043 | GST_C | Glutathione S-transferase, C-terminal domain | 2.2E-05 | 165 | 227 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0006749 | glutathione metabolic process | Yes |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0009987 | cellular process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006575 | cellular modified amino acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.85 | 1.23 | 10.46 |
| 5d_25C | Five days - 25 degrees Celsius | 8.84 | 2.43 | 15.25 |
| 7d_25C | Seven days - 25 degrees Celsius | 9.34 | 2.52 | 16.17 |
| 10d_25C | Ten days - 25 degrees Celsius | 16.68 | 6.25 | 27.11 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.27 | 1.39 | 11.15 |
| 7d_30C | Seven days - 30 degrees Celsius | 7.42 | 1.95 | 12.88 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.394036 | no |
| 3d_25C | 7d_25C | 0.324447 | no |
| 3d_25C | 7d_15C | 0.919424 | no |
| 3d_25C | 7d_30C | 0.668535 | no |
| 3d_25C | 10d_25C | 0.009124 | yes |
| 5d_25C | 7d_25C | 0.931971 | no |
| 5d_25C | 7d_15C | 0.494972 | no |
| 5d_25C | 7d_30C | 0.752899 | no |
| 5d_25C | 10d_25C | 0.094678 | no |
| 7d_25C | 7d_15C | 0.410548 | no |
| 7d_25C | 7d_30C | 0.662315 | no |
| 7d_25C | 10d_25C | 0.124773 | no |
| 7d_15C | 7d_30C | 0.775208 | no |
| 7d_15C | 10d_25C | 0.013211 | yes |
| 7d_30C | 10d_25C | 0.026584 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8436.t1 MSQPSEDLSVRPQIPDDKLVLYVKKSSPTSTANAVKPLMLIQALKIPHELHIINSTSNETWFHSINPYKMVPAME DVEIYQVNGKPQRLNIFDSSACLTYLAEKYDQEGLYNGKDLCERTIVMNWLMSYTAGLGATGKIWLLMKAPKPVD IGESLSVLLKYICTEYQFLETRLNEPGQHYIALPDRPTIADFAILPLANETIATSAKLDFGQWPKLKEWSEKMRE LPPVKEALNRISRIGLSDEELMELDRKD* |
| Coding | >Pro_DTO377G3_2|g8436.t1 ATGTCCCAGCCAAGCGAAGATCTATCCGTGCGGCCTCAAATCCCCGATGACAAGCTAGTCTTGTACGTCAAAAAA TCGAGTCCCACATCCACGGCCAACGCCGTGAAGCCGCTGATGCTCATTCAGGCCCTGAAAATTCCTCACGAACTT CATATCATCAATTCAACCAGCAACGAAACATGGTTTCACTCGATCAACCCTTATAAGATGGTCCCCGCCATGGAG GACGTCGAAATTTACCAGGTCAACGGCAAGCCGCAGCGGCTGAACATTTTCGATAGCTCTGCATGTCTAACTTAC CTGGCGGAGAAGTACGACCAAGAGGGACTTTACAATGGCAAAGACCTCTGTGAACGAACCATTGTCATGAACTGG TTGATGTCCTACACTGCGGGGTTGGGTGCAACCGGCAAGATTTGGCTTTTGATGAAAGCACCGAAGCCAGTGGAT ATTGGCGAATCTCTTTCGGTGTTGCTGAAATACATTTGCACCGAGTATCAGTTCCTGGAAACTCGGCTGAATGAA CCTGGCCAGCATTACATAGCTTTGCCCGACAGACCGACCATTGCGGACTTTGCCATCTTGCCTCTTGCGAATGAA ACTATCGCAACGTCCGCCAAGCTGGACTTTGGCCAATGGCCAAAATTGAAGGAGTGGAGTGAGAAGATGAGAGAG CTACCGCCGGTCAAGGAGGCTTTGAATAGAATCTCTCGGATTGGATTATCCGATGAAGAGCTCATGGAGCTGGAT CGCAAAGATTAG |
| Transcript | >Pro_DTO377G3_2|g8436.t1 ATGTCCCAGCCAAGCGAAGATCTATCCGTGCGGCCTCAAATCCCCGATGACAAGCTAGTCTTGTACGTCAAAAAA TCGAGTCCCACATCCACGGCCAACGCCGTGAAGCCGCTGATGCTCATTCAGGCCCTGAAAATTCCTCACGAACTT CATATCATCAATTCAACCAGCAACGAAACATGGTTTCACTCGATCAACCCTTATAAGATGGTCCCCGCCATGGAG GACGTCGAAATTTACCAGGTCAACGGCAAGCCGCAGCGGCTGAACATTTTCGATAGCTCTGCATGTCTAACTTAC CTGGCGGAGAAGTACGACCAAGAGGGACTTTACAATGGCAAAGACCTCTGTGAACGAACCATTGTCATGAACTGG TTGATGTCCTACACTGCGGGGTTGGGTGCAACCGGCAAGATTTGGCTTTTGATGAAAGCACCGAAGCCAGTGGAT ATTGGCGAATCTCTTTCGGTGTTGCTGAAATACATTTGCACCGAGTATCAGTTCCTGGAAACTCGGCTGAATGAA CCTGGCCAGCATTACATAGCTTTGCCCGACAGACCGACCATTGCGGACTTTGCCATCTTGCCTCTTGCGAATGAA ACTATCGCAACGTCCGCCAAGCTGGACTTTGGCCAATGGCCAAAATTGAAGGAGTGGAGTGAGAAGATGAGAGAG CTACCGCCGGTCAAGGAGGCTTTGAATAGAATCTCTCGGATTGGATTATCCGATGAAGAGCTCATGGAGCTGGAT CGCAAAGATTAG |
| Gene | >Pro_DTO377G3_2|g8436.t1 ATGTCCCAGCCAAGCGAAGATCTATCCGTGCGGCCTCAAATCCCCGATGACAAGCTAGTCTTGTACGTCAAAAAA TGTAAGAAAGTCCAACACTACGGTCAAAATCCATGGCGAAATCCAGTCAATTGATCTTGTATCCCTTCATTTATG ATCGGGATGAGCCTTGGTCTTCCCACTTTTACGGCTACTAACTGCCTACAGCGAGTCCCACATCCACGGCCAACG CCGTGAAGCCGCTGATGCTCATTCAGGCCCTGAAAATTCCTCACGAACTTCATATCATCAATTCAACCAGCAACG AAACATGGTTTCACTCGATCAACCCTTATAAGATGGTCCCCGCCATGGAGGACGTCGAAATTTACCAGGTCAACG GCAAGCCGCAGCGGCTGAACATTTTCGATAGCTCTGCATGTCTAACTTACCTGGCGGAGAAGTACGACCAAGAGG GACTTTACAATGGCAAAGACCTCTGTGAACGAACCATTGTCATGAACTGGTTGATGTCCTACACTGCGGGGTTGG GTGCAACCGGCAAGATTTGGCTTTTGATGAAAGCACCGAAGCCAGTGGATATTGGCGAATCTCTTTCGGTGTTGC TGAAATACATTTGCACCGAGTATCAGTTCCTGGAAACTCGGCTGAATGAACCTGGCCAGCATTACATAGCTTTGC CCGACAGACCGACCATTGCGGACTTTGCCATCTTGCCTCTTGCGAATGAAACTATCGCAACGTCCGCCAAGCTGG ACTTTGGCCAATGGCCAAAATTGAAGGAGTGGAGTGAGAAGATGAGAGAGCTACCGCCGGTCAAGGAGGCTTTGA ATAGAATCTCTCGGATTGGATTATCCGATGAAGAGCTCATGGAGCTGGATCGCAAAGATTAG |