© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g843.t1 |
| Gene name | |
| Location | scaffold_01:2253815..2255068 |
| Strand | + |
| Gene length (bp) | 1253 |
| Transcript length (bp) | 855 |
| Coding sequence length (bp) | 855 |
| Protein length (aa) | 285 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01184 | Gpr1_Fun34_YaaH | GPR1/FUN34/yaaH family | 8.6E-31 | 53 | 262 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 56 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 64 | 83 | 19 |
| 2 | 93 | 115 | 22 |
| 3 | 122 | 144 | 22 |
| 4 | 164 | 186 | 22 |
| 5 | 191 | 213 | 22 |
| 6 | 228 | 250 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g843.t1 MDSFASQNGESKATFQNRENTQNALTTVPTSVTLSAEQFERLYLSPMTVRQSSLAKKVGNPTPLALGGFVITTTP VSCCLMGWRGASGNGVAFIGPIIFLGGLLLLITSILEFIIGNTFPCVVFGTIGGFWFAFAATMIPAFNAAAPYSS STTDTAAGLASESFMNTYAFLFITMAVLMFIFMICATRINVVYTLIFLSLLMVFLLLSAAYWQLGQGNASVGDRC VKGAGASLFVASLLGFYLLIVQLFGSIGFPCVLPVGDLAVLWTRNEDKEREDVEQPNAR* |
| Coding | >Pro_DTO377G3_2|g843.t1 ATGGACAGCTTCGCCAGTCAAAATGGCGAGTCGAAGGCCACTTTCCAAAACAGGGAGAACACACAAAATGCTCTC ACTACAGTCCCAACGTCAGTGACTCTGTCAGCGGAACAATTTGAAAGGCTTTATTTGAGTCCTATGACGGTTCGC CAATCATCGCTAGCGAAGAAGGTTGGAAATCCGACACCATTAGCACTAGGAGGTTTTGTCATTACCACCACACCC GTTTCATGCTGCTTGATGGGCTGGAGAGGAGCCAGTGGAAATGGAGTTGCTTTCATTGGACCTATCATTTTCCTT GGTGGTCTGTTGTTGCTTATTACGAGTATTCTTGAGTTCATCATCGGAAATACATTCCCCTGTGTTGTGTTTGGC ACTATTGGCGGGTTTTGGTTTGCGTTTGCAGCCACGATGATTCCAGCTTTCAATGCAGCCGCTCCCTACTCCTCG TCAACCACCGATACAGCTGCCGGGCTAGCCAGCGAAAGCTTTATGAATACCTATGCATTCCTATTCATAACTATG GCCGTTTTGATGTTCATCTTCATGATTTGTGCAACACGTATCAATGTGGTATACACTCTCATTTTCCTCTCACTG CTCATGGTTTTCCTTCTGCTGTCCGCGGCCTATTGGCAACTAGGCCAAGGGAATGCATCTGTTGGTGATCGGTGT GTAAAAGGTGCTGGAGCTTCGCTCTTTGTTGCTAGTTTACTCGGCTTTTACCTGTTGATTGTTCAACTGTTTGGG TCCATAGGGTTCCCATGCGTTTTGCCGGTTGGAGACTTGGCAGTACTTTGGACCCGCAATGAAGACAAAGAGCGA GAGGATGTTGAACAGCCAAACGCTCGCTAG |
| Transcript | >Pro_DTO377G3_2|g843.t1 ATGGACAGCTTCGCCAGTCAAAATGGCGAGTCGAAGGCCACTTTCCAAAACAGGGAGAACACACAAAATGCTCTC ACTACAGTCCCAACGTCAGTGACTCTGTCAGCGGAACAATTTGAAAGGCTTTATTTGAGTCCTATGACGGTTCGC CAATCATCGCTAGCGAAGAAGGTTGGAAATCCGACACCATTAGCACTAGGAGGTTTTGTCATTACCACCACACCC GTTTCATGCTGCTTGATGGGCTGGAGAGGAGCCAGTGGAAATGGAGTTGCTTTCATTGGACCTATCATTTTCCTT GGTGGTCTGTTGTTGCTTATTACGAGTATTCTTGAGTTCATCATCGGAAATACATTCCCCTGTGTTGTGTTTGGC ACTATTGGCGGGTTTTGGTTTGCGTTTGCAGCCACGATGATTCCAGCTTTCAATGCAGCCGCTCCCTACTCCTCG TCAACCACCGATACAGCTGCCGGGCTAGCCAGCGAAAGCTTTATGAATACCTATGCATTCCTATTCATAACTATG GCCGTTTTGATGTTCATCTTCATGATTTGTGCAACACGTATCAATGTGGTATACACTCTCATTTTCCTCTCACTG CTCATGGTTTTCCTTCTGCTGTCCGCGGCCTATTGGCAACTAGGCCAAGGGAATGCATCTGTTGGTGATCGGTGT GTAAAAGGTGCTGGAGCTTCGCTCTTTGTTGCTAGTTTACTCGGCTTTTACCTGTTGATTGTTCAACTGTTTGGG TCCATAGGGTTCCCATGCGTTTTGCCGGTTGGAGACTTGGCAGTACTTTGGACCCGCAATGAAGACAAAGAGCGA GAGGATGTTGAACAGCCAAACGCTCGCTAG |
| Gene | >Pro_DTO377G3_2|g843.t1 ATGGACAGCTTCGCCAGTCAAAATGGCGAGTCGAAGGCCACTTTCCAAAACAGGGAGAACACACAAAATGCTCTC ACTACAGTCCCAACGTCAGTGACTCTGTCAGCGGAACAATTTGAAAGGCTTTATTTGAGTCCTATGACGGTTCGC CAATCATCGCTAGCGAAGAAGGTTGGAAATCCGACACCATTGTGAGTCTCTGAATACTATATTCTACGCACGGCA ATTTTGTCTGACTTGATTGAACATGCAGAGCACTAGGAGGTTTTGTCATTACCACCACACCCGTTTCATGCTGCT TGATGGGCTGGAGAGGAGCCAGTGGAAATGGAGTTGCTTTCATGTGAGAAAACCAATGGATCGAGAGAGCCCCAT CTAATGAACTGAACAGTGGACCTATCATTTTCCTTGGTGGTCTGTTGTTGCTTATTACGAGTATTCTTGAGTTCA TCATCGGAAATACATTCCCCTGTGTTGTGTTTGGCACTATTGGTAAGTCTTCCTATCTCATGATACAAGCCTCGC TCACTAGTCCATGTTGCTGATACTTCACCAAGGCGGGTTTTGGTTTGCGTTTGCAGCCACGATGATTCCAGCTTT CAATGCAGCCGGTCAGTTTGTTCAGATATATCATTCTACCCTCATGATATGAGTTTGCTCACACTTCATAGCTCC CTACTCCTCGTCAACCACCGATACAGCTGCCGGGCTAGCCAGCGAAAGCTTTATGAATACCTATGGTAAGGGCAA CCAAGACTCTCAAATTTGAGGAATAGCTCTGACGAAACCAGCATTCCTATTCATAACTATGGCCGTTTTGATGTT CATCTTCATGATTTGTGCAACACGTATCAATGTGGTATACACTCTCATTTTCCTCTCACTGCTCATGGTTTTCCT TCTGCTGTCCGCGGCCTATTGGCAACTAGGCCAAGGGAATGCATCTGTTGGTGATCGGTGTGTAAAAGTGAGTAT CATTCTCATTATTTCTCTGCTATTTTGACTGGATTCTAACCCGATCTTTCTCCCAGGGTGCTGGAGCTTCGCTCT TTGTTGCTAGTTTACTCGGCTTTTACCTGTTGATTGTTCAACTGTTTGGGTCCATAGGGTTCCCATGCGTTTTGC CGGTTGGAGACTTGGCAGTACTTTGGACCCGCAATGAAGACAAGTGAGTCTCCTAAAAACAATCGAATAGTTCGT TCTGACATAATACAAGAGAGCGAGAGGATGTTGAACAGCCAAACGCTCGCTAG |