© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8426.t1 |
| Gene name | |
| Location | scaffold_32:193518..194533 |
| Strand | - |
| Gene length (bp) | 1015 |
| Transcript length (bp) | 906 |
| Coding sequence length (bp) | 906 |
| Protein length (aa) | 302 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00150 | Cellulase | Cellulase (glycosyl hydrolase family 5) | 2.7E-17 | 7 | 255 |
| PF02836 | Glyco_hydro_2_C | Glycosyl hydrolases family 2, TIM barrel domain | 1.7E-05 | 86 | 276 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0071704 | organic substance metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 24.36 | 11.14 | 37.57 |
| 5d_25C | Five days - 25 degrees Celsius | 24.93 | 11.29 | 38.58 |
| 7d_25C | Seven days - 25 degrees Celsius | 25.40 | 11.73 | 39.07 |
| 10d_25C | Ten days - 25 degrees Celsius | 22.92 | 10.16 | 35.68 |
| 7d_15C | Seven days - 15 degrees Celsius | 41.60 | 21.30 | 61.89 |
| 7d_30C | Seven days - 30 degrees Celsius | 19.89 | 8.55 | 31.23 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.963207 | no |
| 3d_25C | 7d_25C | 0.928840 | no |
| 3d_25C | 7d_15C | 0.053498 | no |
| 3d_25C | 7d_30C | 0.588259 | no |
| 3d_25C | 10d_25C | 0.895500 | no |
| 5d_25C | 7d_25C | 0.970296 | no |
| 5d_25C | 7d_15C | 0.066479 | no |
| 5d_25C | 7d_30C | 0.537936 | no |
| 5d_25C | 10d_25C | 0.852139 | no |
| 7d_25C | 7d_15C | 0.078462 | no |
| 7d_25C | 7d_30C | 0.497875 | no |
| 7d_25C | 10d_25C | 0.813986 | no |
| 7d_15C | 7d_30C | 0.007779 | yes |
| 7d_15C | 10d_25C | 0.040411 | yes |
| 7d_30C | 10d_25C | 0.731016 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8426.t1 MDESGLRILRVWGFNDVNTIPSSGTVYYQLLKDGTATINTGADGLQRLDYVVTSAEARNVKLVINFVNNWSDYGG MAAYATAFGSSQTTWYTNTAAQTAYRAYIKAVVARYINSPAVFAWELANEPRCNGCNTSVLYNWIQSTSAYIKSL DSKHMVAIGDEGFGLDTGSDGSYPYSYGEGLNFTMNLGIDTIDFATFHLYPTSWGTTNDWGNGWITSHGAACAAA GKPCLFEEYGATSNHCSIEAPWQKTALNTTGIAADLYWQYGDTLSSGKSADDGNTFYYGTSDFTCLVTDHVAAID S* |
| Coding | >Pro_DTO377G3_2|g8426.t1 ATGGATGAATCTGGGCTCCGAATCCTCCGAGTTTGGGGATTCAACGATGTCAACACTATTCCATCTTCGGGGACT GTTTATTATCAACTACTCAAAGATGGAACTGCCACTATCAACACCGGTGCAGATGGCCTACAGCGCCTGGATTAT GTGGTTACCTCCGCCGAGGCACGGAATGTGAAACTCGTCATCAATTTTGTCAACAACTGGTCGGATTATGGAGGT ATGGCGGCCTATGCCACTGCTTTCGGTAGCAGCCAGACAACCTGGTATACAAATACTGCAGCTCAAACAGCCTAC CGGGCTTACATCAAAGCTGTTGTTGCCCGGTATATCAATTCGCCTGCCGTCTTTGCATGGGAGTTGGCCAATGAG CCCCGCTGCAATGGCTGTAACACTTCGGTTCTTTACAACTGGATCCAGTCTACCAGTGCCTATATCAAGTCTCTA GACTCGAAGCATATGGTTGCCATTGGCGATGAAGGCTTCGGACTGGACACTGGGTCTGATGGCAGCTATCCCTAC AGCTACGGCGAGGGTTTGAACTTTACGATGAATCTAGGGATTGATACCATCGACTTTGCTACATTCCATCTCTAC CCCACAAGCTGGGGAACCACTAACGATTGGGGCAATGGATGGATCACATCCCACGGAGCCGCCTGTGCAGCAGCT GGCAAGCCATGTCTCTTTGAAGAGTACGGTGCTACTTCCAATCACTGTAGCATTGAGGCACCATGGCAGAAGACA GCGTTGAACACCACTGGAATTGCAGCTGATCTCTACTGGCAGTATGGAGACACGCTGAGCTCGGGAAAATCGGCC GATGATGGAAACACCTTCTACTATGGCACTAGTGACTTTACCTGTCTGGTGACGGACCACGTCGCAGCCATTGAC TCCTAG |
| Transcript | >Pro_DTO377G3_2|g8426.t1 ATGGATGAATCTGGGCTCCGAATCCTCCGAGTTTGGGGATTCAACGATGTCAACACTATTCCATCTTCGGGGACT GTTTATTATCAACTACTCAAAGATGGAACTGCCACTATCAACACCGGTGCAGATGGCCTACAGCGCCTGGATTAT GTGGTTACCTCCGCCGAGGCACGGAATGTGAAACTCGTCATCAATTTTGTCAACAACTGGTCGGATTATGGAGGT ATGGCGGCCTATGCCACTGCTTTCGGTAGCAGCCAGACAACCTGGTATACAAATACTGCAGCTCAAACAGCCTAC CGGGCTTACATCAAAGCTGTTGTTGCCCGGTATATCAATTCGCCTGCCGTCTTTGCATGGGAGTTGGCCAATGAG CCCCGCTGCAATGGCTGTAACACTTCGGTTCTTTACAACTGGATCCAGTCTACCAGTGCCTATATCAAGTCTCTA GACTCGAAGCATATGGTTGCCATTGGCGATGAAGGCTTCGGACTGGACACTGGGTCTGATGGCAGCTATCCCTAC AGCTACGGCGAGGGTTTGAACTTTACGATGAATCTAGGGATTGATACCATCGACTTTGCTACATTCCATCTCTAC CCCACAAGCTGGGGAACCACTAACGATTGGGGCAATGGATGGATCACATCCCACGGAGCCGCCTGTGCAGCAGCT GGCAAGCCATGTCTCTTTGAAGAGTACGGTGCTACTTCCAATCACTGTAGCATTGAGGCACCATGGCAGAAGACA GCGTTGAACACCACTGGAATTGCAGCTGATCTCTACTGGCAGTATGGAGACACGCTGAGCTCGGGAAAATCGGCC GATGATGGAAACACCTTCTACTATGGCACTAGTGACTTTACCTGTCTGGTGACGGACCACGTCGCAGCCATTGAC TCCTAG |
| Gene | >Pro_DTO377G3_2|g8426.t1 ATGGATGAATCTGGGCTCCGAATCCTCCGAGTTTGGGGATTCAACGATGTCAACACTATTCCATCTTCGGGGACT GTTTATTATCAACTACTCAAAGATGGAACTGCCACTATCAACACCGGTGCAGATGGCCTACAGCGCCTGGATTAT GTGGTTACCTCCGCCGAGGCACGGAATGTGAAACTCGTCATCAATTTTGTCAACAACTGGTCGGATTATGGAGGT ATGGCGGCCTATGCCACTGCTTTCGGTAGCAGCCAGACAACCTGGTATACAAATACTGCAGCTCAAACAGCCTAC CGGGCTTACATCAAAGCTGTTGTTGCCCGGTATATCAATTCGCCTGCCGTCTTTGCATGGGAGTTGGCCAATGAG CCCCGCTGCAATGGCTGTAACACTTCGGTTCTTTACAACTGGATCCAGTCTACCAGTGCCTATATCAAGTCTCTA GACTCGAAGCATATGGTTGCCATTGGCGATGGTATCTAGGCCCGTAATATCTCTCCCATCATCCATTGTCTAACT CATATTATAGAAGGCTTCGGACTGGACACTGGGTCTGATGGCAGCTATCCCTACAGCTACGGCGAGGGTTTGAAC TTTACGATGAATCTAGGGATTGATACCATCGACTTTGCTACATTCCATCTCTACCCCACAAGCTGTATGTATATC CTTTTCCCATGACCCTTGGTCCAGAGCTAATGTATTCGCACAAGGGGGAACCACTAACGATTGGGGCAATGGATG GATCACATCCCACGGAGCCGCCTGTGCAGCAGCTGGCAAGCCATGTCTCTTTGAAGAGTACGGTGCTACTTCCAA TCACTGTAGCATTGAGGCACCATGGCAGAAGACAGCGTTGAACACCACTGGAATTGCAGCTGATCTCTACTGGCA GTATGGAGACACGCTGAGCTCGGGAAAATCGGCCGATGATGGAAACACCTTCTACTATGGCACTAGTGACTTTAC CTGTCTGGTGACGGACCACGTCGCAGCCATTGACTCCTAG |