© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8423.t1 |
| Gene name | |
| Location | scaffold_32:184413..185633 |
| Strand | - |
| Gene length (bp) | 1220 |
| Transcript length (bp) | 1113 |
| Coding sequence length (bp) | 1113 |
| Protein length (aa) | 371 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02668 | TauD | Taurine catabolism dioxygenase TauD, TfdA family | 3.6E-54 | 8 | 359 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 215.22 | 130.97 | 299.47 |
| 5d_25C | Five days - 25 degrees Celsius | 339.04 | 200.90 | 477.19 |
| 7d_25C | Seven days - 25 degrees Celsius | 305.05 | 179.65 | 430.44 |
| 10d_25C | Ten days - 25 degrees Celsius | 460.41 | 265.29 | 655.53 |
| 7d_15C | Seven days - 15 degrees Celsius | 346.04 | 196.38 | 495.70 |
| 7d_30C | Seven days - 30 degrees Celsius | 310.68 | 178.42 | 442.94 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.026091 | yes |
| 3d_25C | 7d_25C | 0.112039 | no |
| 3d_25C | 7d_15C | 0.026091 | yes |
| 3d_25C | 7d_30C | 0.100042 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.724678 | no |
| 5d_25C | 7d_15C | 0.957304 | no |
| 5d_25C | 7d_30C | 0.782975 | no |
| 5d_25C | 10d_25C | 0.196857 | no |
| 7d_25C | 7d_15C | 0.674912 | no |
| 7d_25C | 7d_30C | 0.959894 | no |
| 7d_25C | 10d_25C | 0.070025 | no |
| 7d_15C | 7d_30C | 0.732962 | no |
| 7d_15C | 10d_25C | 0.262321 | no |
| 7d_30C | 10d_25C | 0.092202 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8423.t1 MAVLPLTVRPLQPPPGSSIDFGAEVEGVDLENLTEEQFATIRKALYEHQVVVFKNQKGLSPKAQYELTKRFDPVS ENYGHGKTIDAKRSILHPDLKTVPHQPQVQVIGNGHVDSYEGLKDITLRHPHHRTFHKDHIPDDKDYDFTRFYRW HIDAALYDLYPPQVTTLMAVSVPKGRRQTLLYDDGTGETMDVPLGTTAFVSGERMFELLSPEDKEFVKTSKIEYA PHPYIWMSQAHSRSTGLGLHSEGLELPDSELPPIDPSKIMVFPMTWKNPVTGKLALQIHPSAVRRIHCADGTTID DLARVRDIVYKLQRPAISPQYVYPHDWEDNDLVLFNNRGVLHSVVGAFKPDEVRLFRQCNLAASEPPVGA* |
| Coding | >Pro_DTO377G3_2|g8423.t1 ATGGCTGTGTTACCACTTACCGTCCGTCCGCTTCAGCCTCCTCCGGGCTCAAGCATTGATTTTGGTGCTGAGGTT GAAGGTGTTGATTTGGAAAACTTGACTGAAGAGCAGTTTGCCACTATTCGGAAAGCCCTCTACGAGCACCAGGTT GTGGTGTTCAAAAACCAGAAAGGGCTATCACCTAAAGCCCAGTATGAGCTGACCAAGCGATTCGACCCGGTTTCC GAAAACTATGGACATGGCAAGACCATTGATGCGAAGCGAAGCATCCTCCATCCTGACCTCAAGACTGTCCCTCAC CAGCCACAGGTGCAGGTGATCGGAAATGGACATGTTGATTCGTACGAGGGTCTCAAAGATATCACATTACGACAC CCTCACCACCGCACATTCCACAAAGATCACATCCCGGACGATAAGGACTATGATTTTACCCGGTTTTACCGCTGG CATATCGATGCCGCCCTTTACGACCTATACCCGCCCCAGGTGACAACGCTTATGGCCGTAAGTGTGCCCAAAGGC CGCCGACAGACATTATTGTATGATGATGGAACCGGGGAAACAATGGATGTACCACTTGGGACAACAGCGTTTGTT AGCGGAGAGCGGATGTTTGAACTTCTTTCGCCCGAGGATAAGGAGTTTGTGAAGACAAGCAAAATTGAATATGCC CCCCATCCGTACATTTGGATGAGCCAAGCGCATTCCCGATCTACGGGGCTCGGTCTACACTCAGAAGGACTCGAG TTGCCTGACTCGGAACTTCCACCTATCGACCCTAGTAAGATCATGGTTTTCCCAATGACCTGGAAAAACCCAGTG ACGGGCAAATTGGCTCTCCAGATCCATCCCTCTGCTGTACGGCGTATCCACTGCGCCGATGGAACCACGATCGAT GACTTGGCCCGTGTACGGGACATTGTCTATAAGTTGCAGCGGCCGGCCATCAGCCCTCAGTATGTATATCCCCAT GACTGGGAAGATAACGACTTGGTTTTATTCAACAACCGTGGCGTGCTGCATTCCGTGGTTGGTGCATTCAAACCC GACGAAGTGCGACTGTTCCGTCAATGTAACTTGGCGGCTTCGGAGCCACCAGTTGGGGCATGA |
| Transcript | >Pro_DTO377G3_2|g8423.t1 ATGGCTGTGTTACCACTTACCGTCCGTCCGCTTCAGCCTCCTCCGGGCTCAAGCATTGATTTTGGTGCTGAGGTT GAAGGTGTTGATTTGGAAAACTTGACTGAAGAGCAGTTTGCCACTATTCGGAAAGCCCTCTACGAGCACCAGGTT GTGGTGTTCAAAAACCAGAAAGGGCTATCACCTAAAGCCCAGTATGAGCTGACCAAGCGATTCGACCCGGTTTCC GAAAACTATGGACATGGCAAGACCATTGATGCGAAGCGAAGCATCCTCCATCCTGACCTCAAGACTGTCCCTCAC CAGCCACAGGTGCAGGTGATCGGAAATGGACATGTTGATTCGTACGAGGGTCTCAAAGATATCACATTACGACAC CCTCACCACCGCACATTCCACAAAGATCACATCCCGGACGATAAGGACTATGATTTTACCCGGTTTTACCGCTGG CATATCGATGCCGCCCTTTACGACCTATACCCGCCCCAGGTGACAACGCTTATGGCCGTAAGTGTGCCCAAAGGC CGCCGACAGACATTATTGTATGATGATGGAACCGGGGAAACAATGGATGTACCACTTGGGACAACAGCGTTTGTT AGCGGAGAGCGGATGTTTGAACTTCTTTCGCCCGAGGATAAGGAGTTTGTGAAGACAAGCAAAATTGAATATGCC CCCCATCCGTACATTTGGATGAGCCAAGCGCATTCCCGATCTACGGGGCTCGGTCTACACTCAGAAGGACTCGAG TTGCCTGACTCGGAACTTCCACCTATCGACCCTAGTAAGATCATGGTTTTCCCAATGACCTGGAAAAACCCAGTG ACGGGCAAATTGGCTCTCCAGATCCATCCCTCTGCTGTACGGCGTATCCACTGCGCCGATGGAACCACGATCGAT GACTTGGCCCGTGTACGGGACATTGTCTATAAGTTGCAGCGGCCGGCCATCAGCCCTCAGTATGTATATCCCCAT GACTGGGAAGATAACGACTTGGTTTTATTCAACAACCGTGGCGTGCTGCATTCCGTGGTTGGTGCATTCAAACCC GACGAAGTGCGACTGTTCCGTCAATGTAACTTGGCGGCTTCGGAGCCACCAGTTGGGGCATGA |
| Gene | >Pro_DTO377G3_2|g8423.t1 ATGGCTGTGTTACCACTTACCGTCCGTCCGCTTCAGCCTCCTCCGGGCTCAAGCATTGATTTTGGTGCTGAGGTT GAAGGTGTTGATTTGGAAAACTTGACTGGTTTGTGGATTACTGCCAATTATAAGAGCACAAGCTAATGGTCATAT AGAAGAGCAGTTTGCCACTATTCGGAAAGCCCTCTACGAGCACCAGGTTGTGGTGTTCAAAAACCAGAAAGGGCT ATCACCTAAAGCCCAGTATGAGCTGACCAAGCGATTCGACCCGGTTTCCGAAAACTATGGACATGGCAAGACCAT TGATGCGAAGCGAAGCATCCTCCATCCTGACCTCAAGACTGTCCCTCACCAGCCACAGGTGCAGGTGATCGGAAA TGGACATGTTGATTCGTACGAGGGTCTCAAAGATATCACATTACGACACCCTCACCACCGCACATTCCACAAAGA TCACATCCCGGACGATAAGGACTATGATTTTACCCGGTTTTACCGCTGGCATATCGATGCCGCCCTTTACGACCT ATACCCGCCCCAGGTGACAACGCTTATGGCCGTAAGTGTGCCCAAAGGCCGCCGACAGACATTATTGTATGATGA TGGAACCGGGGAAACAATGGATGTACCACTTGGGACAACAGCGTTTGTTAGCGGAGAGCGGATGTTTGAACTTCT TTCGCCCGAGGATAAGGAGTTTGTGAAGACAAGCAAAATTGAATATGCCCCCCATCCGTAAGATCCCTTATGGTA TTCCCATGGCTCTGATCAACTGAGCTAAATATCACAACAGGTACATTTGGATGAGCCAAGCGCATTCCCGATCTA CGGGGCTCGGTCTACACTCAGAAGGACTCGAGTTGCCTGACTCGGAACTTCCACCTATCGACCCTAGTAAGATCA TGGTTTTCCCAATGACCTGGAAAAACCCAGTGACGGGCAAATTGGCTCTCCAGATCCATCCCTCTGCTGTACGGC GTATCCACTGCGCCGATGGAACCACGATCGATGACTTGGCCCGTGTACGGGACATTGTCTATAAGTTGCAGCGGC CGGCCATCAGCCCTCAGTATGTATATCCCCATGACTGGGAAGATAACGACTTGGTTTTATTCAACAACCGTGGCG TGCTGCATTCCGTGGTTGGTGCATTCAAACCCGACGAAGTGCGACTGTTCCGTCAATGTAACTTGGCGGCTTCGG AGCCACCAGTTGGGGCATGA |