© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8421.t1 |
| Gene name | |
| Location | scaffold_32:180315..181942 |
| Strand | + |
| Gene length (bp) | 1627 |
| Transcript length (bp) | 1224 |
| Coding sequence length (bp) | 1224 |
| Protein length (aa) | 408 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01494 | FAD_binding_3 | FAD binding domain | 4.1E-22 | 9 | 360 |
| PF01266 | DAO | FAD dependent oxidoreductase | 6.6E-08 | 9 | 43 |
| PF00890 | FAD_binding_2 | FAD binding domain | 4.7E-07 | 9 | 40 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 2.5E-06 | 12 | 39 |
| PF05834 | Lycopene_cycl | Lycopene cyclase protein | 1.6E-06 | 9 | 165 |
| PF12831 | FAD_oxidored | FAD dependent oxidoreductase | 1.9E-06 | 9 | 156 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0071949 | FAD binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0050660 | flavin adenine dinucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.5 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 25.14 | 12.94 | 37.34 |
| 5d_25C | Five days - 25 degrees Celsius | 15.49 | 7.01 | 23.97 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.75 | 7.65 | 25.86 |
| 10d_25C | Ten days - 25 degrees Celsius | 9.22 | 3.32 | 15.12 |
| 7d_15C | Seven days - 15 degrees Celsius | 14.49 | 5.92 | 23.07 |
| 7d_30C | Seven days - 30 degrees Celsius | 9.01 | 3.38 | 14.64 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.094810 | no |
| 3d_25C | 7d_25C | 0.178570 | no |
| 3d_25C | 7d_15C | 0.070883 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.002761 | yes |
| 5d_25C | 7d_25C | 0.864370 | no |
| 5d_25C | 7d_15C | 0.890360 | no |
| 5d_25C | 7d_30C | 0.101296 | no |
| 5d_25C | 10d_25C | 0.141294 | no |
| 7d_25C | 7d_15C | 0.737653 | no |
| 7d_25C | 7d_30C | 0.059704 | no |
| 7d_25C | 10d_25C | 0.080003 | no |
| 7d_15C | 7d_30C | 0.176901 | no |
| 7d_15C | 10d_25C | 0.222881 | no |
| 7d_30C | 10d_25C | 0.969259 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8421.t1 MTVSAQPLDVLVVGAGIAGLSTAIALGKQGHRVVILEKSAFLKETGAAIHLPPNCTALLRWMGIDPADFGGTLLH QIHRYRFDGELTYKREFADTRHHWQAEWYLVHRVELHNHLKQRALETATLHTGCRITEVNLEGACPSVTLGDGRT FKADLLLGADGLHSQIRQSIAPGSPSPYPVGKSCFRWLLPTDQLKQHASTVDFVRDTGVFIEWASHDRRLVAYPC SDSKILNLCAFVPLNEVQADNQSDTWQSVGDQTTIVRAFSKFSPGVQQIIASADKNLKVWDLYDMEELPTWTRGH AALLGDAAHPFQPYLGQGAAMAIEDAVSIATLLPCGSTPDDVPTRLEMYQAGRRPRVNFVLHYTRINGRDEDDTA GDRLSAVEMVKVMNICFSYNEIEHSTKLLEDR* |
| Coding | >Pro_DTO377G3_2|g8421.t1 ATGACGGTATCAGCCCAGCCTCTTGACGTCCTCGTCGTCGGCGCCGGCATTGCTGGTCTCTCAACAGCTATTGCC CTCGGAAAACAGGGGCATCGTGTTGTGATTCTGGAAAAGTCTGCTTTTTTGAAAGAAACTGGGGCTGCGATCCAT TTGCCGCCGAATTGCACTGCTTTGCTACGCTGGATGGGCATTGATCCAGCAGATTTCGGAGGCACATTGCTTCAT CAGATACACCGATATAGATTTGACGGGGAGTTGACATACAAGAGAGAGTTTGCTGACACTCGTCATCATTGGCAA GCGGAGTGGTACCTCGTGCATCGAGTTGAGCTACACAACCACCTCAAACAACGTGCCCTTGAAACCGCAACGTTG CATACAGGGTGTAGAATAACCGAGGTCAATCTGGAAGGGGCTTGTCCGTCGGTCACTCTCGGTGATGGTCGCACT TTCAAGGCTGACCTGCTCCTTGGTGCAGATGGACTACATTCCCAAATTCGCCAGAGTATCGCACCAGGATCTCCC TCCCCATACCCCGTTGGCAAGTCATGCTTCCGTTGGCTTCTTCCCACAGATCAATTAAAGCAACATGCGAGCACT GTTGATTTTGTGCGAGACACCGGCGTGTTTATTGAGTGGGCATCCCATGACCGGCGGCTCGTGGCTTACCCTTGC TCTGATAGCAAGATCCTCAATCTTTGTGCTTTTGTCCCTTTGAATGAAGTTCAGGCAGACAACCAAAGTGACACC TGGCAGTCAGTTGGAGACCAGACTACAATTGTGAGGGCCTTTTCGAAGTTTTCACCCGGTGTTCAGCAAATTATT GCAAGTGCAGACAAAAATCTCAAAGTATGGGATCTTTATGATATGGAGGAACTGCCGACTTGGACTCGAGGCCAC GCTGCTCTTCTGGGAGATGCAGCACATCCGTTCCAGCCATACTTGGGCCAGGGAGCAGCTATGGCAATCGAAGAT GCAGTTAGCATTGCCACCTTGCTCCCTTGTGGCAGTACGCCGGACGATGTCCCCACGCGACTTGAAATGTACCAA GCGGGCCGTCGGCCACGGGTCAACTTTGTCCTCCACTACACTCGGATAAATGGACGGGATGAGGATGATACAGCC GGTGATAGATTATCAGCTGTGGAAATGGTGAAAGTCATGAATATTTGTTTCTCATACAATGAGATTGAGCACTCT ACAAAGTTGCTGGAGGATAGATGA |
| Transcript | >Pro_DTO377G3_2|g8421.t1 ATGACGGTATCAGCCCAGCCTCTTGACGTCCTCGTCGTCGGCGCCGGCATTGCTGGTCTCTCAACAGCTATTGCC CTCGGAAAACAGGGGCATCGTGTTGTGATTCTGGAAAAGTCTGCTTTTTTGAAAGAAACTGGGGCTGCGATCCAT TTGCCGCCGAATTGCACTGCTTTGCTACGCTGGATGGGCATTGATCCAGCAGATTTCGGAGGCACATTGCTTCAT CAGATACACCGATATAGATTTGACGGGGAGTTGACATACAAGAGAGAGTTTGCTGACACTCGTCATCATTGGCAA GCGGAGTGGTACCTCGTGCATCGAGTTGAGCTACACAACCACCTCAAACAACGTGCCCTTGAAACCGCAACGTTG CATACAGGGTGTAGAATAACCGAGGTCAATCTGGAAGGGGCTTGTCCGTCGGTCACTCTCGGTGATGGTCGCACT TTCAAGGCTGACCTGCTCCTTGGTGCAGATGGACTACATTCCCAAATTCGCCAGAGTATCGCACCAGGATCTCCC TCCCCATACCCCGTTGGCAAGTCATGCTTCCGTTGGCTTCTTCCCACAGATCAATTAAAGCAACATGCGAGCACT GTTGATTTTGTGCGAGACACCGGCGTGTTTATTGAGTGGGCATCCCATGACCGGCGGCTCGTGGCTTACCCTTGC TCTGATAGCAAGATCCTCAATCTTTGTGCTTTTGTCCCTTTGAATGAAGTTCAGGCAGACAACCAAAGTGACACC TGGCAGTCAGTTGGAGACCAGACTACAATTGTGAGGGCCTTTTCGAAGTTTTCACCCGGTGTTCAGCAAATTATT GCAAGTGCAGACAAAAATCTCAAAGTATGGGATCTTTATGATATGGAGGAACTGCCGACTTGGACTCGAGGCCAC GCTGCTCTTCTGGGAGATGCAGCACATCCGTTCCAGCCATACTTGGGCCAGGGAGCAGCTATGGCAATCGAAGAT GCAGTTAGCATTGCCACCTTGCTCCCTTGTGGCAGTACGCCGGACGATGTCCCCACGCGACTTGAAATGTACCAA GCGGGCCGTCGGCCACGGGTCAACTTTGTCCTCCACTACACTCGGATAAATGGACGGGATGAGGATGATACAGCC GGTGATAGATTATCAGCTGTGGAAATGGTGAAAGTCATGAATATTTGTTTCTCATACAATGAGATTGAGCACTCT ACAAAGTTGCTGGAGGATAGATGA |
| Gene | >Pro_DTO377G3_2|g8421.t1 ATGACGGTATCAGCCCAGCCTCTTGACGTCCTCGTCGTCGGCGCCGGCATTGCTGGTCTCTCAACAGCTATTGCC CTCGGAAAACAGGGGCATCGTGTTGTGGTATGCCCCGGGCAACAACCCAAGCTTGCTGCAAAATTAATTTCTCAC CAAGCCTAGATTCTGGAAAAGTCTGCTTTTTTGAAAGAAACTGGGGCTGCGATCCATTTGCCGCCGAATTGCACT GCTTTGCTACGCTGGATGGGCATTGATCCAGCAGATTTCGGAGGCACATTGCTTCATCAGGTCAGATTTGTCTCT TGACAAGAAGAGTGGCTGGAATTGATATTTTTTGCTTTCTCCAGATACACCGATATAGATTTGACGGGGAGTTGA CATACAAGAGAGAGTTTGCTGACACTCGTCATCATTGGCAAGCGGTAGGCGAATGAAGCGGACCCAGCCAGGACA ATATCTAATCTGAACACAGGAGTGGTACCTCGTGCATCGAGTTGAGCTACACAACCACCTCAAACAACGTGCCCT TGAAACCGCAACGTTGCATACAGGGTGTAGAATAACCGAGGTCAATCTGGAAGGGGCTTGTCCGTCGGTCACTCT CGGTGATGGTCGCACTTTCAAGGCTGACCTGCTCCTTGGTGCAGATGGACTACATGTATGAACACTAGATTATCA ACACCGGTGTTTATCCAGCTCTCGTCCCTGTTCTAACTGTTCTATAGTCCCAAATTCGCCAGAGTATCGCACCAG GATCTCCCTCCCCATACCCCGTTGGCAAGTCATGCTTCCGTTGGCTTCTTCCCACAGATCAATTAAAGCAACATG CGAGCACTGTTGATTTTGTGCGAGACACCGGCGTGTTTATTGAGTGGGCATCCCATGACCGGCGGCTCGTGGCTT ACCCTTGCTCTGATAGCAAGATCCTCAATCTTTGTGCTTTTGTCCCTTTGAATGAAGTTCAGGCAGACAACCAAA GTGACAGTAAGAGGTTTCCGGGGGTTGATACAGAAGGTTACTGACAAATTGGGATTAATAGCCTGGCAGTCAGTT GGAGACCAGACTACAATTGTGAGGGCCTTTTCGAAGTTTTCACCCGGTGTTCAGCAAATTATTGCAAGTGCAGAC AAAAATCTCAAAGTATGGGATCTTTATGATATGGAGGAACTGCCGACTTGGACTCGAGGCCACGCTGCTCTTCTG GGAGATGCAGCACATCCGTTCCAGCCATGTAAGCAACCGAATAGCTGCAAATGGACAAACTTGTTTTGTGTGACA TACACTGACAACTCGATAGACTTGGGCCAGGGAGCAGCTATGGCAATCGAAGATGCAGTTAGCATTGCCACCTTG CTCCCTTGTGGCAGTACGCCGGACGATGTCCCCACGCGACTTGAAATGTACCAAGCGGGCCGTCGGCCACGGGTC AACTTTGTCCTCCACTACACTCGGATAAATGGACGGGATGAGGATGATACAGCCGGTGATAGATTATCAGGTGTG TTAGTTTTAAGAGCCTTGGAATGGATCCAAACTGACAATGATAGCTGTGGAAATGGTGAAAGTCATGAATATTTG TTTCTCATACAATGAGATTGAGCACTCTACAAAGTTGCTGGAGGATAGATGA |