© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8417.t1 |
| Gene name | |
| Location | scaffold_32:172501..173985 |
| Strand | - |
| Gene length (bp) | 1484 |
| Transcript length (bp) | 1422 |
| Coding sequence length (bp) | 1422 |
| Protein length (aa) | 474 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00494 | SQS_PSY | Squalene/phytoene synthase | 7.5E-39 | 50 | 329 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0009058 | biosynthetic process | Yes |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 420 | 442 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 56.30 | 33.73 | 78.86 |
| 5d_25C | Five days - 25 degrees Celsius | 62.47 | 37.71 | 87.23 |
| 7d_25C | Seven days - 25 degrees Celsius | 62.06 | 37.49 | 86.64 |
| 10d_25C | Ten days - 25 degrees Celsius | 76.63 | 46.68 | 106.58 |
| 7d_15C | Seven days - 15 degrees Celsius | 65.66 | 39.74 | 91.58 |
| 7d_30C | Seven days - 30 degrees Celsius | 54.69 | 32.76 | 76.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.720131 | no |
| 3d_25C | 7d_25C | 0.743571 | no |
| 3d_25C | 7d_15C | 0.564423 | no |
| 3d_25C | 7d_30C | 0.933836 | no |
| 3d_25C | 10d_25C | 0.183584 | no |
| 5d_25C | 7d_25C | 0.985492 | no |
| 5d_25C | 7d_15C | 0.878948 | no |
| 5d_25C | 7d_30C | 0.633867 | no |
| 5d_25C | 10d_25C | 0.416719 | no |
| 7d_25C | 7d_15C | 0.857517 | no |
| 7d_25C | 7d_30C | 0.651470 | no |
| 7d_25C | 10d_25C | 0.390613 | no |
| 7d_15C | 7d_30C | 0.473034 | no |
| 7d_15C | 10d_25C | 0.554189 | no |
| 7d_30C | 10d_25C | 0.130858 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8417.t1 MGLIGNALYYSFHPMQLRSILQWKVWHNPPHERNEKNETENQKICFQFLDKTSRSFSAVIKELHPELLIPICIFY LVLRGLDTIEDDTSIPLATKEPLLRDFKDILTQDGWTFTGNRPEEKDRELLVQFNHVVTEFMNMKPEYQVIIKDI TEKMGNGMADYAVKAEHDDASVKTKEEYDLYCYYVAGLVGEGLTRLFVEAGFGNPALLKRPKLHKSMGLFLQKTN IIRDIREDFDDNRRFWPQEIWSKHVDNFEDLFKPEHLDAALNCSSEMVLNALEHAEECLFYLAGMREQSVFNFCA IPQSMAIATMELCFRNPDIFQRNIKITKGDACELMHKSTQNLSVLCDTFRQYTRKIHKKNTPRDPNFLKISIVCG QIEKFIETIFPTQSAEAANRKVSGELTAAELQKKKEDDENKSDVYFMMALMGVIVVVIASLMIFAAWMMGARFDL AFKEITSGHFRPPAKNQLEHPEL* |
| Coding | >Pro_DTO377G3_2|g8417.t1 ATGGGTCTCATCGGCAATGCTCTCTACTACTCTTTCCACCCCATGCAGCTGAGGTCAATTCTCCAATGGAAAGTC TGGCACAACCCGCCCCATGAGCGTAACGAGAAGAACGAGACCGAGAATCAGAAGATCTGTTTCCAGTTTTTGGAC AAAACCAGCCGCAGCTTCAGCGCCGTGATCAAGGAGTTACATCCCGAATTGTTAATCCCTATCTGCATCTTCTAC TTGGTCCTCCGTGGACTGGATACCATCGAGGATGACACTTCCATTCCATTGGCCACCAAGGAACCTCTTCTCCGG GACTTTAAGGACATCTTGACGCAAGATGGCTGGACTTTTACTGGGAATCGGCCGGAGGAGAAGGACCGTGAGCTG CTGGTTCAGTTCAACCACGTCGTCACCGAGTTCATGAACATGAAGCCTGAATACCAGGTTATCATCAAGGACATC ACTGAGAAGATGGGTAATGGCATGGCTGACTATGCTGTGAAGGCAGAGCATGACGATGCTAGTGTGAAGACTAAG GAGGAGTATGATCTATACTGCTACTACGTCGCTGGATTGGTTGGCGAGGGCCTCACTCGCCTCTTCGTCGAGGCC GGGTTTGGTAACCCGGCTCTGTTGAAGCGACCTAAGTTACATAAGTCAATGGGTCTTTTCCTCCAGAAGACTAAT ATCATCCGCGATATCCGAGAGGATTTCGATGATAACCGACGTTTCTGGCCTCAGGAAATTTGGTCCAAGCATGTC GACAACTTTGAAGATCTCTTCAAGCCAGAGCACCTTGATGCAGCTCTTAACTGCAGCTCGGAGATGGTCCTGAAC GCGTTGGAGCATGCTGAGGAGTGCCTGTTCTACTTGGCCGGTATGCGAGAGCAGAGTGTTTTCAACTTCTGTGCA ATCCCGCAGTCTATGGCCATCGCCACAATGGAGTTGTGTTTCCGCAACCCCGATATCTTCCAGCGCAACATTAAA ATCACCAAGGGAGACGCATGTGAACTCATGCATAAGTCAACCCAAAACTTGTCGGTTCTGTGCGACACCTTCCGC CAATATACGCGCAAGATTCACAAGAAGAATACCCCCCGGGATCCCAACTTCCTGAAGATCAGCATTGTCTGCGGA CAGATTGAGAAGTTCATTGAGACCATCTTCCCGACGCAATCCGCCGAGGCCGCTAACCGTAAGGTCTCTGGTGAG CTCACTGCGGCCGAGCTACAGAAGAAGAAGGAAGACGACGAGAACAAGAGTGATGTCTACTTCATGATGGCTCTC ATGGGAGTCATTGTTGTCGTTATCGCTAGTCTCATGATCTTCGCCGCCTGGATGATGGGCGCCCGGTTCGACCTT GCCTTTAAGGAGATCACGTCTGGCCACTTCAGGCCGCCGGCTAAGAACCAGCTTGAACACCCGGAGCTTTGA |
| Transcript | >Pro_DTO377G3_2|g8417.t1 ATGGGTCTCATCGGCAATGCTCTCTACTACTCTTTCCACCCCATGCAGCTGAGGTCAATTCTCCAATGGAAAGTC TGGCACAACCCGCCCCATGAGCGTAACGAGAAGAACGAGACCGAGAATCAGAAGATCTGTTTCCAGTTTTTGGAC AAAACCAGCCGCAGCTTCAGCGCCGTGATCAAGGAGTTACATCCCGAATTGTTAATCCCTATCTGCATCTTCTAC TTGGTCCTCCGTGGACTGGATACCATCGAGGATGACACTTCCATTCCATTGGCCACCAAGGAACCTCTTCTCCGG GACTTTAAGGACATCTTGACGCAAGATGGCTGGACTTTTACTGGGAATCGGCCGGAGGAGAAGGACCGTGAGCTG CTGGTTCAGTTCAACCACGTCGTCACCGAGTTCATGAACATGAAGCCTGAATACCAGGTTATCATCAAGGACATC ACTGAGAAGATGGGTAATGGCATGGCTGACTATGCTGTGAAGGCAGAGCATGACGATGCTAGTGTGAAGACTAAG GAGGAGTATGATCTATACTGCTACTACGTCGCTGGATTGGTTGGCGAGGGCCTCACTCGCCTCTTCGTCGAGGCC GGGTTTGGTAACCCGGCTCTGTTGAAGCGACCTAAGTTACATAAGTCAATGGGTCTTTTCCTCCAGAAGACTAAT ATCATCCGCGATATCCGAGAGGATTTCGATGATAACCGACGTTTCTGGCCTCAGGAAATTTGGTCCAAGCATGTC GACAACTTTGAAGATCTCTTCAAGCCAGAGCACCTTGATGCAGCTCTTAACTGCAGCTCGGAGATGGTCCTGAAC GCGTTGGAGCATGCTGAGGAGTGCCTGTTCTACTTGGCCGGTATGCGAGAGCAGAGTGTTTTCAACTTCTGTGCA ATCCCGCAGTCTATGGCCATCGCCACAATGGAGTTGTGTTTCCGCAACCCCGATATCTTCCAGCGCAACATTAAA ATCACCAAGGGAGACGCATGTGAACTCATGCATAAGTCAACCCAAAACTTGTCGGTTCTGTGCGACACCTTCCGC CAATATACGCGCAAGATTCACAAGAAGAATACCCCCCGGGATCCCAACTTCCTGAAGATCAGCATTGTCTGCGGA CAGATTGAGAAGTTCATTGAGACCATCTTCCCGACGCAATCCGCCGAGGCCGCTAACCGTAAGGTCTCTGGTGAG CTCACTGCGGCCGAGCTACAGAAGAAGAAGGAAGACGACGAGAACAAGAGTGATGTCTACTTCATGATGGCTCTC ATGGGAGTCATTGTTGTCGTTATCGCTAGTCTCATGATCTTCGCCGCCTGGATGATGGGCGCCCGGTTCGACCTT GCCTTTAAGGAGATCACGTCTGGCCACTTCAGGCCGCCGGCTAAGAACCAGCTTGAACACCCGGAGCTTTGA |
| Gene | >Pro_DTO377G3_2|g8417.t1 ATGGGTCTCATCGGCAATGCTCTCTACTACTCTTTCCACCCCATGCAGCTGAGGTCAATTCTCCAATGGTATGTT TTGGTGTTCCTGAAGCTCATTCCCACATGCGAAGCTAACGATCCACGTCACATAGGAAAGTCTGGCACAACCCGC CCCATGAGCGTAACGAGAAGAACGAGACCGAGAATCAGAAGATCTGTTTCCAGTTTTTGGACAAAACCAGCCGCA GCTTCAGCGCCGTGATCAAGGAGTTACATCCCGAATTGTTAATCCCTATCTGCATCTTCTACTTGGTCCTCCGTG GACTGGATACCATCGAGGATGACACTTCCATTCCATTGGCCACCAAGGAACCTCTTCTCCGGGACTTTAAGGACA TCTTGACGCAAGATGGCTGGACTTTTACTGGGAATCGGCCGGAGGAGAAGGACCGTGAGCTGCTGGTTCAGTTCA ACCACGTCGTCACCGAGTTCATGAACATGAAGCCTGAATACCAGGTTATCATCAAGGACATCACTGAGAAGATGG GTAATGGCATGGCTGACTATGCTGTGAAGGCAGAGCATGACGATGCTAGTGTGAAGACTAAGGAGGAGTATGATC TATACTGCTACTACGTCGCTGGATTGGTTGGCGAGGGCCTCACTCGCCTCTTCGTCGAGGCCGGGTTTGGTAACC CGGCTCTGTTGAAGCGACCTAAGTTACATAAGTCAATGGGTCTTTTCCTCCAGAAGACTAATATCATCCGCGATA TCCGAGAGGATTTCGATGATAACCGACGTTTCTGGCCTCAGGAAATTTGGTCCAAGCATGTCGACAACTTTGAAG ATCTCTTCAAGCCAGAGCACCTTGATGCAGCTCTTAACTGCAGCTCGGAGATGGTCCTGAACGCGTTGGAGCATG CTGAGGAGTGCCTGTTCTACTTGGCCGGTATGCGAGAGCAGAGTGTTTTCAACTTCTGTGCAATCCCGCAGTCTA TGGCCATCGCCACAATGGAGTTGTGTTTCCGCAACCCCGATATCTTCCAGCGCAACATTAAAATCACCAAGGGAG ACGCATGTGAACTCATGCATAAGTCAACCCAAAACTTGTCGGTTCTGTGCGACACCTTCCGCCAATATACGCGCA AGATTCACAAGAAGAATACCCCCCGGGATCCCAACTTCCTGAAGATCAGCATTGTCTGCGGACAGATTGAGAAGT TCATTGAGACCATCTTCCCGACGCAATCCGCCGAGGCCGCTAACCGTAAGGTCTCTGGTGAGCTCACTGCGGCCG AGCTACAGAAGAAGAAGGAAGACGACGAGAACAAGAGTGATGTCTACTTCATGATGGCTCTCATGGGAGTCATTG TTGTCGTTATCGCTAGTCTCATGATCTTCGCCGCCTGGATGATGGGCGCCCGGTTCGACCTTGCCTTTAAGGAGA TCACGTCTGGCCACTTCAGGCCGCCGGCTAAGAACCAGCTTGAACACCCGGAGCTTTGA |