© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g8406.t1 |
| Gene name | |
| Location | scaffold_32:145416..148157 |
| Strand | - |
| Gene length (bp) | 2741 |
| Transcript length (bp) | 2535 |
| Coding sequence length (bp) | 2535 |
| Protein length (aa) | 845 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17786 | Mannosidase_ig | Mannosidase Ig/CBM-like domain | 5.9E-19 | 674 | 762 |
| PF00703 | Glyco_hydro_2 | Glycosyl hydrolases family 2 | 1.1E-14 | 192 | 296 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 13.38 | 7.17 | 19.60 |
| 5d_25C | Five days - 25 degrees Celsius | 14.02 | 7.61 | 20.44 |
| 7d_25C | Seven days - 25 degrees Celsius | 13.83 | 7.46 | 20.20 |
| 10d_25C | Ten days - 25 degrees Celsius | 12.45 | 6.56 | 18.34 |
| 7d_15C | Seven days - 15 degrees Celsius | 13.30 | 7.09 | 19.50 |
| 7d_30C | Seven days - 30 degrees Celsius | 27.73 | 16.49 | 38.98 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.904519 | no |
| 3d_25C | 7d_25C | 0.935722 | no |
| 3d_25C | 7d_15C | 0.988129 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.848964 | no |
| 5d_25C | 7d_25C | 0.971919 | no |
| 5d_25C | 7d_15C | 0.889315 | no |
| 5d_25C | 7d_30C | 0.003625 | yes |
| 5d_25C | 10d_25C | 0.734717 | no |
| 7d_25C | 7d_15C | 0.922694 | no |
| 7d_25C | 7d_30C | 0.002297 | yes |
| 7d_25C | 10d_25C | 0.768667 | no |
| 7d_15C | 7d_30C | 0.001278 | yes |
| 7d_15C | 10d_25C | 0.865602 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8406.t1 MAKIIHSLSSDWSFKDRDTDEWLPVASVPSVVQQDLIANNKLDDPYIGFKELNARWVNEKTWVYRKVVEKPSVPA GSAIVLVFDGLDTFAKVKMDEQVILESDNMFLGHRVDVTKALEAEDEHTLEIEFDCALVKARELRSQHTKHKWVG FNGDLSRLAVRKAQYHWGWDWGPVLMTAGIWRAVRFEVYQARVANIWPQTQLSADHQAADVTVVIDVESVGDREY TAQFSLGLKGNEIASKTIPVSERTTQVKFPVDKPALWWPHGYGEQTLYDMSVSLLRNGEQVDQTSKKFGIRAAEI VQQPDKHGKSFFVRLNGMDIFCGGSCWIPADSLLPAVSAERYRKWIELLVAGRQVMIRVWGGGIYEDDSFYEACD ELGVLVWQDFMFGCGNYPTWPKMLESIRQEAIYNLERMRHHPSIVLYAGNNEDYQVAESEGLTYNYEDKDPENWL KTDFPARYIYEKLLPDLVAKYSPGTFYHPGSPWGDGKISSDSTVGDLHQWNVWHGTQEKYQIFDTLGGRFNSEFG MEAFPHISTIDYFVENPEDKFPQSQVIDFHNKADGHERRLATYLVENLRSATDLETYIYLTQVVQAETMMFGYRG WRQQWGDERHCGGALLWQLNDCWPTISWAIVDYFLRPKPAYYAVKRVLNPIAIGVRREHHDWSVSHAQPAKTSKY ELWIASNQPKTVQGSIELRFLSVNTGRDLRAPIARENITIAANGTTDIINGVLDHIAEPEPHVLAARLWVDNQVV ARDVDWPQPLKYLNLSERQVEVKRQTGKSGETVLVISACKPVKCLVFKEQEGVQLADNAIDIVPGDEQTVRVTGL GSEPLRYRYLGQVSCEVVE* |
| Coding | >Pro_DTO377G3_2|g8406.t1 ATGGCTAAGATCATACACTCTCTTTCTTCTGACTGGTCCTTCAAGGATCGGGACACCGACGAATGGCTGCCAGTG GCTTCGGTCCCATCTGTGGTACAACAGGATCTCATTGCTAACAACAAGCTCGATGATCCTTATATCGGATTCAAA GAATTGAACGCCCGCTGGGTCAACGAGAAGACGTGGGTTTACCGAAAGGTGGTGGAGAAGCCATCCGTCCCCGCC GGCTCTGCAATTGTACTGGTCTTCGACGGTCTTGATACATTTGCCAAGGTCAAGATGGATGAACAAGTGATCTTG GAGAGTGATAACATGTTCCTGGGCCACCGAGTGGACGTCACCAAAGCATTGGAAGCAGAGGACGAACACACGCTC GAGATTGAGTTCGACTGTGCACTCGTCAAGGCACGCGAGCTCCGATCCCAGCACACGAAACATAAATGGGTCGGG TTCAATGGTGATCTATCTCGCTTGGCTGTGCGAAAAGCTCAGTATCACTGGGGCTGGGACTGGGGTCCAGTGTTG ATGACCGCGGGCATCTGGCGTGCCGTACGGTTCGAGGTGTATCAAGCTCGCGTGGCCAATATTTGGCCCCAAACA CAGCTATCTGCAGACCACCAGGCAGCTGATGTAACGGTCGTTATTGATGTGGAGAGTGTCGGTGATCGGGAATAT ACGGCCCAGTTTAGCCTTGGCTTAAAAGGAAACGAGATTGCAAGCAAGACTATCCCTGTGTCCGAGAGAACAACT CAAGTAAAATTCCCAGTCGACAAACCGGCTCTGTGGTGGCCCCATGGATATGGCGAGCAGACTCTGTACGACATG TCGGTGTCGCTACTTCGCAATGGTGAACAAGTTGACCAGACATCTAAAAAGTTTGGTATCCGGGCCGCCGAGATC GTTCAACAACCGGACAAGCATGGCAAATCCTTTTTCGTCCGACTCAATGGAATGGACATTTTCTGCGGCGGTTCG TGTTGGATTCCGGCAGACAGTCTACTCCCTGCTGTCAGTGCTGAGCGATACCGCAAGTGGATTGAACTTCTGGTC GCTGGCAGACAAGTGATGATACGTGTCTGGGGTGGTGGTATATATGAAGACGACTCCTTCTATGAGGCCTGCGAT GAATTGGGAGTACTGGTCTGGCAAGATTTTATGTTTGGGTGTGGTAATTATCCCACATGGCCTAAGATGCTCGAG TCTATCCGTCAAGAGGCAATCTACAATTTGGAGCGTATGCGCCACCATCCTTCGATTGTGCTCTATGCGGGCAAC AACGAGGACTATCAAGTGGCAGAGTCAGAAGGCTTGACCTATAACTACGAAGATAAAGACCCGGAGAACTGGTTG AAAACAGATTTTCCAGCACGATACATCTATGAGAAGCTGCTTCCAGATCTGGTGGCTAAATACTCACCTGGCACA TTCTATCACCCTGGGAGTCCATGGGGAGATGGCAAGATATCGTCAGATTCCACTGTTGGTGATCTACACCAATGG AACGTGTGGCATGGAACGCAGGAGAAATACCAAATTTTCGATACTCTGGGCGGTCGGTTCAACAGCGAGTTTGGA ATGGAGGCATTCCCCCATATCTCTACCATTGACTACTTCGTCGAGAATCCAGAGGACAAATTTCCTCAATCCCAG GTGATTGACTTCCACAACAAGGCCGACGGTCATGAACGAAGACTGGCTACGTACCTTGTAGAGAATCTACGGTCC GCCACAGACCTCGAGACCTATATCTATCTCACTCAAGTTGTACAAGCAGAGACCATGATGTTTGGCTACCGAGGC TGGCGTCAGCAATGGGGCGACGAGCGACACTGCGGTGGTGCACTGCTCTGGCAGCTGAACGACTGCTGGCCGACA ATCTCATGGGCCATCGTGGACTACTTCCTTAGGCCAAAACCAGCGTACTACGCCGTTAAGCGGGTCTTGAACCCG ATCGCCATCGGGGTCCGACGTGAGCACCACGACTGGAGCGTGTCACACGCCCAACCGGCCAAGACCAGCAAGTAC GAACTTTGGATCGCCAGCAATCAACCCAAGACCGTACAAGGCAGTATCGAGCTGCGGTTCCTATCTGTCAACACA GGCCGCGATCTTCGGGCTCCGATCGCGCGCGAAAATATCACCATTGCTGCCAATGGCACCACGGACATCATCAAT GGTGTTCTCGACCACATCGCCGAGCCAGAACCGCATGTCCTCGCCGCCCGGTTATGGGTTGACAACCAGGTCGTA GCACGTGATGTCGACTGGCCACAGCCATTGAAGTATCTCAATCTGTCCGAGCGACAGGTAGAGGTAAAGAGGCAG ACAGGGAAATCTGGTGAGACGGTGTTGGTGATCAGTGCCTGCAAGCCGGTTAAGTGTCTTGTGTTCAAGGAGCAA GAGGGTGTACAGCTTGCGGACAACGCTATCGACATTGTCCCTGGTGATGAGCAGACAGTCAGAGTTACTGGCCTT GGAAGTGAGCCTCTAAGGTACCGGTACTTAGGACAAGTCTCATGCGAAGTGGTCGAATGA |
| Transcript | >Pro_DTO377G3_2|g8406.t1 ATGGCTAAGATCATACACTCTCTTTCTTCTGACTGGTCCTTCAAGGATCGGGACACCGACGAATGGCTGCCAGTG GCTTCGGTCCCATCTGTGGTACAACAGGATCTCATTGCTAACAACAAGCTCGATGATCCTTATATCGGATTCAAA GAATTGAACGCCCGCTGGGTCAACGAGAAGACGTGGGTTTACCGAAAGGTGGTGGAGAAGCCATCCGTCCCCGCC GGCTCTGCAATTGTACTGGTCTTCGACGGTCTTGATACATTTGCCAAGGTCAAGATGGATGAACAAGTGATCTTG GAGAGTGATAACATGTTCCTGGGCCACCGAGTGGACGTCACCAAAGCATTGGAAGCAGAGGACGAACACACGCTC GAGATTGAGTTCGACTGTGCACTCGTCAAGGCACGCGAGCTCCGATCCCAGCACACGAAACATAAATGGGTCGGG TTCAATGGTGATCTATCTCGCTTGGCTGTGCGAAAAGCTCAGTATCACTGGGGCTGGGACTGGGGTCCAGTGTTG ATGACCGCGGGCATCTGGCGTGCCGTACGGTTCGAGGTGTATCAAGCTCGCGTGGCCAATATTTGGCCCCAAACA CAGCTATCTGCAGACCACCAGGCAGCTGATGTAACGGTCGTTATTGATGTGGAGAGTGTCGGTGATCGGGAATAT ACGGCCCAGTTTAGCCTTGGCTTAAAAGGAAACGAGATTGCAAGCAAGACTATCCCTGTGTCCGAGAGAACAACT CAAGTAAAATTCCCAGTCGACAAACCGGCTCTGTGGTGGCCCCATGGATATGGCGAGCAGACTCTGTACGACATG TCGGTGTCGCTACTTCGCAATGGTGAACAAGTTGACCAGACATCTAAAAAGTTTGGTATCCGGGCCGCCGAGATC GTTCAACAACCGGACAAGCATGGCAAATCCTTTTTCGTCCGACTCAATGGAATGGACATTTTCTGCGGCGGTTCG TGTTGGATTCCGGCAGACAGTCTACTCCCTGCTGTCAGTGCTGAGCGATACCGCAAGTGGATTGAACTTCTGGTC GCTGGCAGACAAGTGATGATACGTGTCTGGGGTGGTGGTATATATGAAGACGACTCCTTCTATGAGGCCTGCGAT GAATTGGGAGTACTGGTCTGGCAAGATTTTATGTTTGGGTGTGGTAATTATCCCACATGGCCTAAGATGCTCGAG TCTATCCGTCAAGAGGCAATCTACAATTTGGAGCGTATGCGCCACCATCCTTCGATTGTGCTCTATGCGGGCAAC AACGAGGACTATCAAGTGGCAGAGTCAGAAGGCTTGACCTATAACTACGAAGATAAAGACCCGGAGAACTGGTTG AAAACAGATTTTCCAGCACGATACATCTATGAGAAGCTGCTTCCAGATCTGGTGGCTAAATACTCACCTGGCACA TTCTATCACCCTGGGAGTCCATGGGGAGATGGCAAGATATCGTCAGATTCCACTGTTGGTGATCTACACCAATGG AACGTGTGGCATGGAACGCAGGAGAAATACCAAATTTTCGATACTCTGGGCGGTCGGTTCAACAGCGAGTTTGGA ATGGAGGCATTCCCCCATATCTCTACCATTGACTACTTCGTCGAGAATCCAGAGGACAAATTTCCTCAATCCCAG GTGATTGACTTCCACAACAAGGCCGACGGTCATGAACGAAGACTGGCTACGTACCTTGTAGAGAATCTACGGTCC GCCACAGACCTCGAGACCTATATCTATCTCACTCAAGTTGTACAAGCAGAGACCATGATGTTTGGCTACCGAGGC TGGCGTCAGCAATGGGGCGACGAGCGACACTGCGGTGGTGCACTGCTCTGGCAGCTGAACGACTGCTGGCCGACA ATCTCATGGGCCATCGTGGACTACTTCCTTAGGCCAAAACCAGCGTACTACGCCGTTAAGCGGGTCTTGAACCCG ATCGCCATCGGGGTCCGACGTGAGCACCACGACTGGAGCGTGTCACACGCCCAACCGGCCAAGACCAGCAAGTAC GAACTTTGGATCGCCAGCAATCAACCCAAGACCGTACAAGGCAGTATCGAGCTGCGGTTCCTATCTGTCAACACA GGCCGCGATCTTCGGGCTCCGATCGCGCGCGAAAATATCACCATTGCTGCCAATGGCACCACGGACATCATCAAT GGTGTTCTCGACCACATCGCCGAGCCAGAACCGCATGTCCTCGCCGCCCGGTTATGGGTTGACAACCAGGTCGTA GCACGTGATGTCGACTGGCCACAGCCATTGAAGTATCTCAATCTGTCCGAGCGACAGGTAGAGGTAAAGAGGCAG ACAGGGAAATCTGGTGAGACGGTGTTGGTGATCAGTGCCTGCAAGCCGGTTAAGTGTCTTGTGTTCAAGGAGCAA GAGGGTGTACAGCTTGCGGACAACGCTATCGACATTGTCCCTGGTGATGAGCAGACAGTCAGAGTTACTGGCCTT GGAAGTGAGCCTCTAAGGTACCGGTACTTAGGACAAGTCTCATGCGAAGTGGTCGAATGA |
| Gene | >Pro_DTO377G3_2|g8406.t1 ATGGCTAAGATCATACACTCTCTTTCTTCTGACTGGTCCTTCAAGGATCGGGACACCGACGAATGGCTGCCAGTG GCTTCGGTCCCATCTGTGGTACAACAGGATCTCATTGCTAACAACAAGTGAGCTGGGTTTGTTAGACGAAACGTT TCAAATCTAAAAGGTCTCTTTCAACAGGCTCGATGATCCTTATATCGGATTCAAAGAATTGAACGCCCGCTGGGT CAACGAGAAGACGTGGGTTTACCGAAAGGTGGTGGAGAAGCCATCCGTCCCCGCCGGCTCTGCAATTGTACTGGT CTTCGACGGTCTTGATACATTTGCCAAGGTCAAGATGGATGAACAAGTGATCTTGGAGAGTGATAACATGTTCCT GGGCCACCGAGTGGACGTCACCAAAGCATTGGAAGCAGAGGACGAACACACGCTCGAGATTGAGTTCGACTGTGC ACTCGTCAAGGCACGCGAGCTCCGATCCCAGCACACGAAACATAAATGGGTCGGGTTCAATGGTGATCTATCTCG CTTGGCTGTGCGAAAAGCTCAGTATCACTGGGGCTGGGACTGGGGTCCAGTGTTGATGACCGCGGGCATCTGGCG TGCCGTACGGTTCGAGGTGTATCAAGCTCGCGTGGCCAATATTTGGCCCCAAACACAGCTATCTGCAGACCACCA GGCAGCTGATGTAACGGTCGTTATTGATGTGGAGAGTGTCGGTGATCGGGAATATACGGCCCAGTTTAGCCTTGG CTTAAAAGGAAACGAGATTGCAAGCAAGACTATCCCTGTGTCCGAGAGAACAACTCAAGTAAAATTCCCAGTCGA CAAACCGGCTCTGTGGTGGCCCCATGGATATGGCGAGCAGACTCTGTACGACATGTCGGTGTCGCTACTTCGCAA TGGTGAACAAGTTGACCAGACATCTAAAAAGTTTGGTATCCGGGCCGCCGAGATCGTTCAACAACCGGACAAGCA TGGCAAATCCTTTTTCGTCCGACTCAATGGAATGGACATTTTCTGCGGCGGTTCGTGTTGGATTCCGGCAGACAG TCTACTCCCTGCTGTCAGTGCTGAGCGATACCGCAAGTGGATTGAACTTCTGGTCGCTGGCAGACAAGTGATGAT ACGGTAAGTTTTGTTTTCCTATGTGTTCTCGGATGTGGATTTAGCTAACGTTGAACAAGTGTCTGGGGTGGTGGT ATATATGAAGACGACTCCTTCTATGAGGCCTGCGATGAATTGGGAGTACTGGTCTGGCAAGATTTTATGTTTGGG TGTGGTAATTATCCCACATGGCCTAAGATGCTCGAGTCTATCCGTCAAGAGGCAATCTACAATTTGGAGCGTATG CGCCACCATCCTTCGATTGTGCTCTATGCGGGCAACAACGAGGACTATCAAGTGGCAGAGTCAGAAGGCTTGACC TATAACTACGAAGATAAAGACCCGGAGAACTGGTTGAAAACAGATTTTCCAGCACGATACATCTATGAGAAGCTG CTTCCAGATCTGGTGGCTAAATACTCACCTGGCACATTCTATCACCCTGGGAGTCCATGGGGAGATGGCAAGATA TCGTCAGATTCCACTGTTGGTGATCTACACCAATGGAACGGTCAGTGTTCTCTAACAAATCTCGAATCATTGCGC TAATCACTAGAATAGTGTGGCATGGAACGCAGGAGAAATACCAAATTTTCGATACTCTGGGCGGTCGGTTCAACA GCGAGTTTGGAATGGAGGCATTCCCCCATATCTCTACCATTGACTACTTCGTCGAGAATCCAGAGGACAAATTTC CTCAATCCCAGGTGATTGACTTCCACAACAAGGCCGACGGTCATGAACGAAGACTGGCTACGTACCTTGTAGAGA ATCTACGGTCCGCCACAGACCTCGAGGTATGACCACCCGTGATGACCACCGATGCAGGCTAACGTCTCCAGACCT ATATCTATCTCACTCAAGTTGTACAAGCAGAGACCATGATGTTTGGCTACCGAGGCTGGCGTCAGCAATGGGGCG ACGAGCGACACTGCGGTGGTGCACTGCTCTGGCAGCTGAACGACTGCTGGCCGACAATCTCATGGGCCATCGTGG ACTACTTCCTTAGGCCAAAACCAGCGTACTACGCCGTTAAGCGGGTCTTGAACCCGATCGCCATCGGGGTCCGAC GTGAGCACCACGACTGGAGCGTGTCACACGCCCAACCGGCCAAGACCAGCAAGTACGAACTTTGGATCGCCAGCA ATCAACCCAAGACCGTACAAGGCAGTATCGAGCTGCGGTTCCTATCTGTCAACACAGGCCGCGATCTTCGGGCTC CGATCGCGCGCGAAAATATCACCATTGCTGCCAATGGCACCACGGACATCATCAATGGTGTTCTCGACCACATCG CCGAGCCAGAACCGCATGTCCTCGCCGCCCGGTTATGGGTTGACAACCAGGTCGTAGCACGTGATGTCGACTGGC CACAGCCATTGAAGTATCTCAATCTGTCCGAGCGACAGGTAGAGGTAAAGAGGCAGACAGGGAAATCTGGTGAGA CGGTGTTGGTGATCAGTGCCTGCAAGCCGGTTAAGTGTCTTGTGTTCAAGGAGCAAGAGGGTGTACAGCTTGCGG ACAACGCTATCGACATTGTCCCTGGTGATGAGCAGACAGTCAGAGTTACTGGCCTTGGAAGTGAGCCTCTAAGGT ACCGGTACTTAGGACAAGTCTCATGCGAAGTGGTCGAATGA |