© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8390.t1 |
| Gene name | |
| Location | scaffold_32:115041..115793 |
| Strand | - |
| Gene length (bp) | 752 |
| Transcript length (bp) | 525 |
| Coding sequence length (bp) | 525 |
| Protein length (aa) | 175 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04117 | Mpv17_PMP22 | Mpv17 / PMP22 family | 7.6E-24 | 110 | 166 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 32 | 19 |
| 2 | 52 | 71 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 41.16 | 17.15 | 65.16 |
| 5d_25C | Five days - 25 degrees Celsius | 48.29 | 21.23 | 75.35 |
| 7d_25C | Seven days - 25 degrees Celsius | 64.61 | 30.56 | 98.67 |
| 10d_25C | Ten days - 25 degrees Celsius | 55.70 | 25.59 | 85.80 |
| 7d_15C | Seven days - 15 degrees Celsius | 48.81 | 21.41 | 76.20 |
| 7d_30C | Seven days - 30 degrees Celsius | 50.04 | 22.26 | 77.82 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.696403 | no |
| 3d_25C | 7d_25C | 0.146998 | no |
| 3d_25C | 7d_15C | 0.678057 | no |
| 3d_25C | 7d_30C | 0.616058 | no |
| 3d_25C | 10d_25C | 0.390532 | no |
| 5d_25C | 7d_25C | 0.380329 | no |
| 5d_25C | 7d_15C | 0.984495 | no |
| 5d_25C | 7d_30C | 0.941344 | no |
| 5d_25C | 10d_25C | 0.724314 | no |
| 7d_25C | 7d_15C | 0.405769 | no |
| 7d_25C | 7d_30C | 0.457400 | no |
| 7d_25C | 10d_25C | 0.696925 | no |
| 7d_15C | 7d_30C | 0.959911 | no |
| 7d_15C | 10d_25C | 0.745889 | no |
| 7d_30C | 10d_25C | 0.799640 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8390.t1 MLRWYQSKLAKRPILTASITSAFLFGSGDVLAQQAVDRKGLQEHDFARTGRMALYGGAVFGPVATTWFGILQRHV VLKGTASTTAARVAADQVFFAPTQLTCFLSSMAIMEGADPVERLKTAFVPAYKANLMVWPFVQGVNFTFIPLELR LLFVNVVSLGWNCFLSLMNSGEEL* |
| Coding | >Pro_DTO377G3_2|g8390.t1 ATGCTACGCTGGTACCAGTCTAAGTTGGCAAAGCGGCCTATCCTCACCGCAAGCATCACCAGTGCTTTCCTATTC GGTAGCGGGGATGTTCTAGCCCAGCAAGCTGTTGACCGAAAAGGTCTCCAAGAGCACGACTTCGCTCGTACTGGG CGAATGGCTCTATACGGTGGAGCTGTCTTCGGTCCGGTTGCCACTACCTGGTTTGGCATCCTCCAGCGTCATGTC GTTCTCAAAGGCACTGCGTCCACCACCGCCGCTCGTGTTGCCGCCGACCAAGTCTTCTTTGCCCCCACCCAGCTC ACATGTTTCCTATCCTCGATGGCTATCATGGAAGGCGCTGATCCTGTGGAAAGGTTGAAGACTGCCTTTGTTCCC GCCTACAAGGCCAACCTGATGGTCTGGCCATTTGTACAGGGCGTCAACTTCACATTTATTCCGCTAGAGCTGCGC TTGCTCTTTGTCAACGTTGTCAGTTTGGGGTGGAACTGCTTCCTTAGCTTGATGAACAGCGGGGAGGAATTATAA |
| Transcript | >Pro_DTO377G3_2|g8390.t1 ATGCTACGCTGGTACCAGTCTAAGTTGGCAAAGCGGCCTATCCTCACCGCAAGCATCACCAGTGCTTTCCTATTC GGTAGCGGGGATGTTCTAGCCCAGCAAGCTGTTGACCGAAAAGGTCTCCAAGAGCACGACTTCGCTCGTACTGGG CGAATGGCTCTATACGGTGGAGCTGTCTTCGGTCCGGTTGCCACTACCTGGTTTGGCATCCTCCAGCGTCATGTC GTTCTCAAAGGCACTGCGTCCACCACCGCCGCTCGTGTTGCCGCCGACCAAGTCTTCTTTGCCCCCACCCAGCTC ACATGTTTCCTATCCTCGATGGCTATCATGGAAGGCGCTGATCCTGTGGAAAGGTTGAAGACTGCCTTTGTTCCC GCCTACAAGGCCAACCTGATGGTCTGGCCATTTGTACAGGGCGTCAACTTCACATTTATTCCGCTAGAGCTGCGC TTGCTCTTTGTCAACGTTGTCAGTTTGGGGTGGAACTGCTTCCTTAGCTTGATGAACAGCGGGGAGGAATTATAA |
| Gene | >Pro_DTO377G3_2|g8390.t1 ATGCTACGCTGGTAAGTCTCTCTTACTCATCTCCTTCAATCGCAGCTCATAACATTCAACCAGGTACCAGTCTAA GTTGGCAAAGCGGCCTATCCTCACCGCAAGCATCACCAGTGCTGTATGATTCTCTCCTTTCTCCTTTCTCTGGAC CAGTTCCTGACTCTTGTTACAACAGTTCCTATTCGGTAGCGGGGATGTTCTAGCCCAGCAAGCTGTTGACCGAAA AGGTCTCCAAGAGCACGACTTCGCTCGTACTGGGCGAATGGCTCTATACGGTGGAGGTATGTCTATATGTCTCAA GTGCCTTGTACATTGCTGATCCGTGTCTTTTCAGCTGTCTTCGGTCCGGTTGCCACTACCTGGTTTGGCATCCTC CAGCGTCATGTCGTTCTCAAAGGCACTGCGTCCACCACCGCCGCTCGTGTTGCCGCCGACCAAGTCTTCTTTGCC CCCACCCAGCTCACATGTTTCCTATCCTCGATGGCTATCATGGAAGGCGCTGATCCTGTGGAAAGGTTGAAGACT GCCTTTGTTCCCGCCTACAAGGCCAACCTGATGGTCTGGCCATTTGTACAGGGCGTCAACTTCACATTTATTCCG CTAGAGCTGCGCTTGCTCTTTGTCAACGTTGTCAGTTTGGGTGAGTAATTTGCTTCGAGGTGTTGCTGATTATGC TCCTGGCTGCAGTCACTAACAACTAAACAGGGTGGAACTGCTTCCTTAGCTTGATGAACAGCGGGGAGGAATTAT AA |