© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8386.t1 |
| Gene name | |
| Location | scaffold_32:102444..103661 |
| Strand | - |
| Gene length (bp) | 1217 |
| Transcript length (bp) | 978 |
| Coding sequence length (bp) | 978 |
| Protein length (aa) | 326 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05739 | SNARE | SNARE domain | 2.2E-12 | 262 | 312 |
| PF00804 | Syntaxin | Syntaxin | 8.9E-12 | 69 | 258 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 296 | 318 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 283.03 | 171.74 | 394.31 |
| 5d_25C | Five days - 25 degrees Celsius | 224.62 | 137.26 | 311.99 |
| 7d_25C | Seven days - 25 degrees Celsius | 206.67 | 126.15 | 287.18 |
| 10d_25C | Ten days - 25 degrees Celsius | 208.69 | 127.25 | 290.13 |
| 7d_15C | Seven days - 15 degrees Celsius | 227.72 | 139.34 | 316.11 |
| 7d_30C | Seven days - 30 degrees Celsius | 167.68 | 102.91 | 232.45 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.322970 | no |
| 3d_25C | 7d_25C | 0.148853 | no |
| 3d_25C | 7d_15C | 0.357095 | no |
| 3d_25C | 7d_30C | 0.007437 | yes |
| 3d_25C | 10d_25C | 0.158403 | no |
| 5d_25C | 7d_25C | 0.778627 | no |
| 5d_25C | 7d_15C | 0.969974 | no |
| 5d_25C | 7d_30C | 0.180711 | no |
| 5d_25C | 10d_25C | 0.807845 | no |
| 7d_25C | 7d_15C | 0.741518 | no |
| 7d_25C | 7d_30C | 0.380329 | no |
| 7d_25C | 10d_25C | 0.979138 | no |
| 7d_15C | 7d_30C | 0.161948 | no |
| 7d_15C | 10d_25C | 0.766291 | no |
| 7d_30C | 10d_25C | 0.357491 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 7587 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8386.t1 MSSLGDTSGGYGQYNPYGSQQQTNPYGGQEQQSYGYGGGYDQAGAAEQGNGGYEMSNINQASSGGPTAILNKCKE LNEGITELTKKRESQLVAAQKALLDSSTGKEDQASRQTLDYIEDEINTALRYLRDQFKRIKETPGSGDARVQGQV ENVSRNLRREIEQYQRTQSDFQKRLEEQVRRRYEIANPEATPEELEQGVQNVLLGQEQSFVVPGTRTRQANDARQ ATMQRSAAIRKIEQDLIELSHLYNEVAELVHQQEPAVQQIQQGAEETHRNVEQANTKLDSAIQSAKNARRWKWYA LIIILIIIGIVVGVAVGVTENNKSK* |
| Coding | >Pro_DTO377G3_2|g8386.t1 ATGAGTAGCTTAGGGGACACCTCAGGCGGCTATGGCCAGTACAACCCATACGGAAGTCAGCAACAGACCAATCCC TATGGGGGCCAGGAACAACAAAGCTATGGATATGGTGGTGGTTATGACCAGGCTGGCGCCGCGGAACAGGGAAAT GGTGGCTACGAGATGTCCAACATCAATCAAGCCTCATCTGGTGGCCCAACGGCGATTCTGAACAAGTGCAAGGAA CTGAACGAGGGTATTACCGAGTTGACCAAGAAGCGCGAGTCCCAATTGGTCGCCGCCCAAAAGGCCCTTCTGGAC TCAAGCACCGGCAAGGAAGACCAGGCTTCGCGCCAAACGCTCGATTACATTGAGGATGAGATCAATACAGCGTTG CGATACCTGCGCGATCAATTCAAGCGCATCAAGGAGACCCCGGGATCCGGCGATGCGCGCGTACAGGGCCAGGTT GAGAACGTCAGCCGCAACTTGCGTCGGGAGATTGAGCAGTACCAGCGCACGCAGAGCGACTTCCAGAAGCGCCTG GAGGAGCAAGTGCGCCGCCGATACGAGATTGCCAATCCCGAGGCTACCCCCGAGGAGTTAGAACAGGGTGTGCAG AATGTTCTGCTGGGACAGGAGCAGAGTTTTGTTGTTCCCGGTACTCGCACCCGCCAGGCCAACGATGCCCGTCAG GCTACTATGCAGCGCTCCGCCGCTATCCGAAAAATCGAGCAGGATCTGATCGAACTCAGCCACCTGTACAATGAG GTCGCAGAGCTGGTACACCAGCAGGAGCCTGCAGTCCAGCAGATTCAGCAAGGAGCCGAGGAGACACACCGCAAT GTCGAGCAGGCCAACACCAAGCTTGACAGCGCTATTCAGAGCGCAAAGAACGCTCGGCGCTGGAAGTGGTACGCG CTGATCATCATCCTCATTATTATTGGTATCGTCGTCGGTGTGGCCGTCGGTGTCACCGAAAACAACAAGAGCAAG TAG |
| Transcript | >Pro_DTO377G3_2|g8386.t1 ATGAGTAGCTTAGGGGACACCTCAGGCGGCTATGGCCAGTACAACCCATACGGAAGTCAGCAACAGACCAATCCC TATGGGGGCCAGGAACAACAAAGCTATGGATATGGTGGTGGTTATGACCAGGCTGGCGCCGCGGAACAGGGAAAT GGTGGCTACGAGATGTCCAACATCAATCAAGCCTCATCTGGTGGCCCAACGGCGATTCTGAACAAGTGCAAGGAA CTGAACGAGGGTATTACCGAGTTGACCAAGAAGCGCGAGTCCCAATTGGTCGCCGCCCAAAAGGCCCTTCTGGAC TCAAGCACCGGCAAGGAAGACCAGGCTTCGCGCCAAACGCTCGATTACATTGAGGATGAGATCAATACAGCGTTG CGATACCTGCGCGATCAATTCAAGCGCATCAAGGAGACCCCGGGATCCGGCGATGCGCGCGTACAGGGCCAGGTT GAGAACGTCAGCCGCAACTTGCGTCGGGAGATTGAGCAGTACCAGCGCACGCAGAGCGACTTCCAGAAGCGCCTG GAGGAGCAAGTGCGCCGCCGATACGAGATTGCCAATCCCGAGGCTACCCCCGAGGAGTTAGAACAGGGTGTGCAG AATGTTCTGCTGGGACAGGAGCAGAGTTTTGTTGTTCCCGGTACTCGCACCCGCCAGGCCAACGATGCCCGTCAG GCTACTATGCAGCGCTCCGCCGCTATCCGAAAAATCGAGCAGGATCTGATCGAACTCAGCCACCTGTACAATGAG GTCGCAGAGCTGGTACACCAGCAGGAGCCTGCAGTCCAGCAGATTCAGCAAGGAGCCGAGGAGACACACCGCAAT GTCGAGCAGGCCAACACCAAGCTTGACAGCGCTATTCAGAGCGCAAAGAACGCTCGGCGCTGGAAGTGGTACGCG CTGATCATCATCCTCATTATTATTGGTATCGTCGTCGGTGTGGCCGTCGGTGTCACCGAAAACAACAAGAGCAAG TAG |
| Gene | >Pro_DTO377G3_2|g8386.t1 ATGAGTGTGAGTGAACCAATGTGTACCCCATTGATTGCTTGAGTTTGCTTTCTGACGCGACTTCCCCTAGTACCA GAGCTTAGGGGACACCTCAGGCGGCTATGGCCAGTACAACCCATACGGAAGTCAGCAACAGACCAATCCCTATGG GGGCCAGGAACAACAAAGCTATGGATATGGTGGTGGTTATGACCAGGCTGGCGCCGCGGAACAGGGAAATGGTGG CTACGGTATGCTGACCCGATAATCGACCTCTTCGCGACGAGTCTAATTCCTCAACAGAGATGTCCAACATCAATC AAGCCTCATCTGGTGGCCCAACGGCGATTCTGAACAAGTGCAAGGAACTGAACGAGGGTATTACCGAGTTGACCA AGAAGCGCGAGTCCCAATTGGTCGCCGCCCAAAAGGCCCTTCTGGACTCAAGCACCGGCAAGGAAGACCAGGCTT CGCGCCAAACGCTCGATTACATTGAGGATGAGATCAATACAGCGTTGCGATACCTGCGCGATCAATTCAAGCGCA TCAAGGAGACCCCGGGATCCGGCGATGCGCGCGTACAGGGCCAGGTTGAGAACGTCAGCCGCAACTTGCGTCGGG AGATTGAGCAGTACCAGCGCACGCAGAGCGACTTCCAGAAGCGCCTGGAGGAGCAAGTGCGCCGCCGATACGAGA TTGCCAATCCCGAGGCTACCCCCGAGGAGTTAGAACAGGGTGTGCAGAATGTTCTGCTGGGACAGGAGCAGAGTT TTGTTGTATGTTTCGCCCGAATTGAATCTTTTACGGGTCGGGTCGGTTGCTAATATTTGAGGAATAGGTTCCCGG TACTCGCACCCGCCAGGCCAACGATGCCCGTCAGGCTACTATGCAGCGCTCCGCCGCTATCCGAAAAATCGAGCA GGATCTGATCGAACTCAGCCACCTGTACAATGAGGTCGCAGAGCTGGTACACCAGCAGGAGCCTGCAGTCCAGCA GATTCAGCAAGGAGCCGAGGAGACACACCGCAATGTCGAGCAGGCCAACACCAAGCTTGACAGCGCTATTCAGAG CGCAAAGAACGCTCGGCGCTGGAAGTGGTACGCGCTGATCATCATCCGTAAGTATTACCTGTCAAGACCAAGATC TGATCGACCCGCTAACCTACTTTCCAGTCATTATTATTGGTATCGTCGTCGGTGTGGCCGTCGGTGTCACCGAAA ACAACAAGAGCAAGTAG |