© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8381.t1 |
| Gene name | |
| Location | scaffold_32:93865..94548 |
| Strand | - |
| Gene length (bp) | 683 |
| Transcript length (bp) | 522 |
| Coding sequence length (bp) | 522 |
| Protein length (aa) | 174 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01284 | MARVEL | Membrane-associating domain | 1.2E-10 | 12 | 135 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 39 | 61 | 22 |
| 3 | 73 | 95 | 22 |
| 4 | 122 | 144 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 427.52 | 260.42 | 594.61 |
| 5d_25C | Five days - 25 degrees Celsius | 1344.53 | 763.00 | 1926.05 |
| 7d_25C | Seven days - 25 degrees Celsius | 1400.25 | 794.40 | 2006.11 |
| 10d_25C | Ten days - 25 degrees Celsius | 2648.81 | 1424.77 | 3872.85 |
| 7d_15C | Seven days - 15 degrees Celsius | 1505.84 | 809.40 | 2202.28 |
| 7d_30C | Seven days - 30 degrees Celsius | 1634.12 | 894.81 | 2373.44 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.911484 | no |
| 5d_25C | 7d_15C | 0.733400 | no |
| 5d_25C | 7d_30C | 0.504023 | no |
| 5d_25C | 10d_25C | 0.002761 | yes |
| 7d_25C | 7d_15C | 0.837335 | no |
| 7d_25C | 7d_30C | 0.611166 | no |
| 7d_25C | 10d_25C | 0.006000 | yes |
| 7d_15C | 7d_30C | 0.820421 | no |
| 7d_15C | 10d_25C | 0.020660 | yes |
| 7d_30C | 10d_25C | 0.048822 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8381.t1 MGFFNHLCGLISTIAHIIQCISSFVVLGITAWAARETKTLTVIFPLVVAVLTPILDGITLGISCFTRRRRWQVLP LLLTDAALSYLWLTAFIFLAQDFNQVSCSIHLWNHEMVCSRKYAAEAFSFIAFFTTFGAMTSEVLYAYLPKKDTP IQERKDGATNLEHNLQGAGLMNP* |
| Coding | >Pro_DTO377G3_2|g8381.t1 ATGGGCTTCTTCAACCACCTCTGTGGTTTAATCTCAACCATCGCTCATATCATCCAATGCATCAGTTCATTTGTC GTCCTCGGGATCACAGCCTGGGCAGCCCGCGAGACGAAAACCCTTACGGTGATATTTCCCTTGGTGGTGGCGGTC CTCACCCCAATCCTCGACGGTATAACACTAGGCATCAGCTGCTTTACCCGACGTCGCAGATGGCAGGTTCTCCCT CTGCTTCTGACGGACGCAGCACTTTCTTACCTCTGGCTCACTGCATTCATCTTTCTGGCTCAGGATTTCAACCAG GTCAGCTGCAGCATCCACCTTTGGAACCACGAGATGGTATGTAGCCGGAAGTATGCGGCCGAGGCATTCAGTTTC ATTGCATTCTTTACTACATTCGGAGCTATGACATCCGAGGTTTTGTATGCATACCTGCCGAAGAAAGATACCCCA ATTCAGGAAAGGAAAGATGGGGCGACGAACCTGGAGCATAATCTCCAGGGTGCCGGATTAATGAACCCTTGA |
| Transcript | >Pro_DTO377G3_2|g8381.t1 ATGGGCTTCTTCAACCACCTCTGTGGTTTAATCTCAACCATCGCTCATATCATCCAATGCATCAGTTCATTTGTC GTCCTCGGGATCACAGCCTGGGCAGCCCGCGAGACGAAAACCCTTACGGTGATATTTCCCTTGGTGGTGGCGGTC CTCACCCCAATCCTCGACGGTATAACACTAGGCATCAGCTGCTTTACCCGACGTCGCAGATGGCAGGTTCTCCCT CTGCTTCTGACGGACGCAGCACTTTCTTACCTCTGGCTCACTGCATTCATCTTTCTGGCTCAGGATTTCAACCAG GTCAGCTGCAGCATCCACCTTTGGAACCACGAGATGGTATGTAGCCGGAAGTATGCGGCCGAGGCATTCAGTTTC ATTGCATTCTTTACTACATTCGGAGCTATGACATCCGAGGTTTTGTATGCATACCTGCCGAAGAAAGATACCCCA ATTCAGGAAAGGAAAGATGGGGCGACGAACCTGGAGCATAATCTCCAGGGTGCCGGATTAATGAACCCTTGA |
| Gene | >Pro_DTO377G3_2|g8381.t1 ATGGGCTTCTTCAACCACCTCTGTGGTTTAATCTCAACCATCGCTCATATCATCCAATGCATCAGTTCATTTGTC GTCCTCGGGATCACAGCCTGGGCAGCCCGCGAGACGAAAACCCTTACGGTGATATTTCCCTTGGTGGTGGTATAT TTCCCCAAGGTCTTATCTTAATATGTAGAGATTCTAAAATCCTTCCAGGCGGTCCTCACCCCAATCCTCGACGGT ATAACACTAGGCATCAGCTGCTTTACCCGACGTCGCAGATGGCAGGTTCTCCCTCTGCTTCTGACGGACGCAGCA CTTTCTTACCTGTAAGCATGATAGTATTAAGCACTCTTTTATACCGGTAACAAATGCTCTCCCATTTAGCTGGCT CACTGCATTCATCTTTCTGGCTCAGGATTTCAACCAGGTCAGCTGCAGCATCCACCTTTGGAACCACGAGATGGT ATGTAGCCGGAAGTATGCGGCCGAGGCATTCAGTTTCATTGCATTGTAAGTGACGTTCTTTTGACGATCAATCCA CTCGCTGATCGCACGGCAGCTTTACTACATTCGGAGCTATGACATCCGAGGTTTTGTATGCATACCTGCCGAAGA AAGATACCCCAATTCAGGAAAGGAAAGATGGGGCGACGAACCTGGAGCATAATCTCCAGGGTGCCGGATTAATGA ACCCTTGA |