© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g837.t1 |
| Gene name | |
| Location | scaffold_01:2239386..2241209 |
| Strand | - |
| Gene length (bp) | 1823 |
| Transcript length (bp) | 1542 |
| Coding sequence length (bp) | 1542 |
| Protein length (aa) | 514 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 2.5E-61 | 66 | 484 |
| PF00324 | AA_permease | Amino acid permease | 8.6E-27 | 63 | 492 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 42 | 64 | 22 |
| 2 | 74 | 93 | 19 |
| 3 | 127 | 149 | 22 |
| 4 | 164 | 186 | 22 |
| 5 | 193 | 215 | 22 |
| 6 | 235 | 257 | 22 |
| 7 | 278 | 300 | 22 |
| 8 | 373 | 395 | 22 |
| 9 | 402 | 424 | 22 |
| 10 | 444 | 466 | 22 |
| 11 | 479 | 496 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 13.91 | 6.52 | 21.30 |
| 5d_25C | Five days - 25 degrees Celsius | 8.49 | 3.30 | 13.67 |
| 7d_25C | Seven days - 25 degrees Celsius | 5.05 | 1.44 | 8.67 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.57 | 0.48 | 4.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.86 | 0.91 | 6.81 |
| 7d_30C | Seven days - 30 degrees Celsius | 13.61 | 6.13 | 21.09 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.121138 | no |
| 3d_25C | 7d_25C | 0.003197 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.962999 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.175760 | no |
| 5d_25C | 7d_15C | 0.041989 | yes |
| 5d_25C | 7d_30C | 0.145733 | no |
| 5d_25C | 10d_25C | 0.006000 | yes |
| 7d_25C | 7d_15C | 0.603680 | no |
| 7d_25C | 7d_30C | 0.003625 | yes |
| 7d_25C | 10d_25C | 0.135029 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.433408 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g837.t1 MALADEAPSRGHVAPKWRGTQADQADMSALGKEQVLRRNFRYISIVGFGCTLIATWEVVLTLLAQGLTDGGTAGL IWGYLIVATGFLLVFLSLAEMASMAPTSGGQYHWVSEFAPPSCQKFLSYITGWLCATGWQCAIVAIAYLAGTIIQ GLIVLNHPDYEGQRWHGTLLVIAITLFSIIFNTFLAKRLPFVEVLILILHVCGLFAIIIPLWVLGPRRSAKEVFT EFNNGGDWNSAGTATLVGFSTTITALIGYDCAVHMSEEIKDASETLPKAMITSVCVNAASGFLMLVTVCFTLGDI DDILASPTGYPFMQVFYNATESLPGTNTMTAILVLTLTASTITEVATASRQLWSFARDRGLPFSDFFGYVNPGWN IPLNSVMVSLVVTVLLSLINIGSTTALLAIVTLTIGAMMSSYIITIACVLLKRIRGEPLPPHKWTLGRFGMAINI GALCFLCPVFVFAFFPLTSTVEPETMNWCAVMYGGILIVAVVYYVLRGRHHYIPPVALVKREM* |
| Coding | >Pro_DTO377G3_2|g837.t1 ATGGCTCTGGCCGACGAAGCCCCGTCCAGAGGCCATGTCGCCCCCAAATGGCGCGGCACCCAGGCTGACCAGGCC GATATGAGCGCTCTAGGGAAAGAGCAAGTCTTGCGACGTAACTTCCGATACATCTCCATTGTAGGATTTGGCTGC ACGCTGATCGCCACGTGGGAGGTTGTTTTGACGCTGCTTGCGCAAGGACTGACCGATGGAGGAACTGCCGGTCTG ATCTGGGGGTACCTCATCGTCGCTACTGGGTTCCTTCTGGTGTTCCTGAGTCTGGCCGAGATGGCATCCATGGCG CCCACCTCCGGCGGACAATACCATTGGGTATCGGAGTTTGCCCCTCCTAGCTGCCAGAAATTCCTCAGCTACATC ACCGGCTGGCTATGTGCTACAGGCTGGCAATGCGCCATTGTAGCGATCGCGTATTTGGCTGGAACTATCATCCAA GGCCTGATAGTGCTGAATCATCCGGATTATGAAGGCCAGCGGTGGCACGGCACCCTGCTGGTTATCGCCATCACC TTGTTTTCGATCATATTCAACACATTCCTGGCCAAGCGGCTGCCATTCGTGGAGGTATTGATTCTGATTCTGCAT GTGTGCGGCCTGTTCGCGATCATAATTCCGCTGTGGGTCCTTGGCCCTCGCCGCAGCGCGAAGGAGGTGTTTACC GAATTCAACAACGGCGGAGATTGGAACAGCGCGGGAACTGCCACGCTCGTTGGATTCTCGACTACAATCACCGCG CTGATTGGATATGATTGTGCAGTGCACATGTCGGAGGAGATCAAAGATGCGTCTGAAACCCTGCCAAAGGCGATG ATCACCTCTGTCTGCGTCAACGCCGCCTCCGGCTTCCTGATGCTGGTGACTGTCTGCTTCACACTAGGGGACATT GACGACATCCTGGCCAGCCCAACAGGATATCCGTTCATGCAGGTGTTCTATAACGCGACAGAGAGTCTGCCGGGA ACGAACACCATGACCGCTATTCTAGTGCTGACTCTAACGGCGAGCACAATTACAGAGGTTGCAACGGCATCGCGC CAGTTGTGGTCTTTCGCGCGTGATCGCGGCCTTCCTTTCTCCGATTTCTTCGGCTATGTAAACCCCGGTTGGAAT ATCCCCTTGAATTCCGTGATGGTCTCGCTAGTAGTGACAGTCCTCTTGTCACTCATCAATATCGGCTCCACAACC GCACTACTCGCCATTGTGACCCTGACCATTGGCGCAATGATGTCCTCATATATCATAACAATTGCATGCGTGCTC CTCAAGCGTATCAGAGGAGAGCCTCTCCCACCGCACAAATGGACGCTTGGCCGGTTCGGCATGGCAATTAATATC GGGGCGTTGTGCTTCCTCTGCCCGGTTTTCGTGTTCGCATTCTTCCCGCTCACTTCCACGGTGGAGCCAGAAACC ATGAACTGGTGCGCAGTGATGTACGGTGGGATTCTTATCGTCGCGGTGGTTTATTATGTGTTGCGGGGACGGCAC CACTATATCCCGCCCGTGGCGCTGGTGAAGCGAGAGATGTAG |
| Transcript | >Pro_DTO377G3_2|g837.t1 ATGGCTCTGGCCGACGAAGCCCCGTCCAGAGGCCATGTCGCCCCCAAATGGCGCGGCACCCAGGCTGACCAGGCC GATATGAGCGCTCTAGGGAAAGAGCAAGTCTTGCGACGTAACTTCCGATACATCTCCATTGTAGGATTTGGCTGC ACGCTGATCGCCACGTGGGAGGTTGTTTTGACGCTGCTTGCGCAAGGACTGACCGATGGAGGAACTGCCGGTCTG ATCTGGGGGTACCTCATCGTCGCTACTGGGTTCCTTCTGGTGTTCCTGAGTCTGGCCGAGATGGCATCCATGGCG CCCACCTCCGGCGGACAATACCATTGGGTATCGGAGTTTGCCCCTCCTAGCTGCCAGAAATTCCTCAGCTACATC ACCGGCTGGCTATGTGCTACAGGCTGGCAATGCGCCATTGTAGCGATCGCGTATTTGGCTGGAACTATCATCCAA GGCCTGATAGTGCTGAATCATCCGGATTATGAAGGCCAGCGGTGGCACGGCACCCTGCTGGTTATCGCCATCACC TTGTTTTCGATCATATTCAACACATTCCTGGCCAAGCGGCTGCCATTCGTGGAGGTATTGATTCTGATTCTGCAT GTGTGCGGCCTGTTCGCGATCATAATTCCGCTGTGGGTCCTTGGCCCTCGCCGCAGCGCGAAGGAGGTGTTTACC GAATTCAACAACGGCGGAGATTGGAACAGCGCGGGAACTGCCACGCTCGTTGGATTCTCGACTACAATCACCGCG CTGATTGGATATGATTGTGCAGTGCACATGTCGGAGGAGATCAAAGATGCGTCTGAAACCCTGCCAAAGGCGATG ATCACCTCTGTCTGCGTCAACGCCGCCTCCGGCTTCCTGATGCTGGTGACTGTCTGCTTCACACTAGGGGACATT GACGACATCCTGGCCAGCCCAACAGGATATCCGTTCATGCAGGTGTTCTATAACGCGACAGAGAGTCTGCCGGGA ACGAACACCATGACCGCTATTCTAGTGCTGACTCTAACGGCGAGCACAATTACAGAGGTTGCAACGGCATCGCGC CAGTTGTGGTCTTTCGCGCGTGATCGCGGCCTTCCTTTCTCCGATTTCTTCGGCTATGTAAACCCCGGTTGGAAT ATCCCCTTGAATTCCGTGATGGTCTCGCTAGTAGTGACAGTCCTCTTGTCACTCATCAATATCGGCTCCACAACC GCACTACTCGCCATTGTGACCCTGACCATTGGCGCAATGATGTCCTCATATATCATAACAATTGCATGCGTGCTC CTCAAGCGTATCAGAGGAGAGCCTCTCCCACCGCACAAATGGACGCTTGGCCGGTTCGGCATGGCAATTAATATC GGGGCGTTGTGCTTCCTCTGCCCGGTTTTCGTGTTCGCATTCTTCCCGCTCACTTCCACGGTGGAGCCAGAAACC ATGAACTGGTGCGCAGTGATGTACGGTGGGATTCTTATCGTCGCGGTGGTTTATTATGTGTTGCGGGGACGGCAC CACTATATCCCGCCCGTGGCGCTGGTGAAGCGAGAGATGTAG |
| Gene | >Pro_DTO377G3_2|g837.t1 ATGGCTCTGGCCGACGAAGCCCCGTCCAGAGGCCATGTCGCCCCCAAATGGCGCGGCACCCAGGCTGACCAGGCC GATATGAGCGCTCTAGGGAAAGAGCAAGTCTTGCGAGTACGTTTCCTATTATCCTGGTTGATGCATCTTCGCTGA CCCTATAGCGTAACTTCCGATACATCTCCATTGTAGGATTTGGCTGCACGCTGATCGCCACGTGGGAGGTTGTTT TGACGTATGCCATCCACACTTACTAATTGTACCAATGACTGACTGTATAGGCTGCTTGCGCAAGGACTGACCGAT GGAGGAACTGCCGGTCTGATCTGGGGGTACCTCATCGTCGCTACTGGGTTCCTTCTGGTGTTCCTGAGTCTGGCC GAGATGGCATCCATGTGAGTCTACCCGTTGAGATCTTGTCTCGTAATTATTCTGACCCCCCAGGGCGCCCACCTC CGGCGGACAATACCATTGGGTATCGGAGTTTGCCCCTCCTAGCTGCCAGAAATTCCTCAGCTACATCACCGGTAA GTTCTCCTACATCCCTTCCGCTCAACTCAACTAATTATGTAGGCTGGCTATGTGCTACAGGCTGGCAATGCGCCA TTGTAGCGATCGCGTATTTGGCTGGAACTATCATCCAAGGCCTGATAGTGCTGAATCATCCGGATTATGAAGGCC AGCGGTGGCACGGCACCCTGCTGGTTATCGCCATCACCTTGTTTTCGATCATATTCAACACATTCCTGGCCAAGC GGCTGCCATTCGTGGAGGTATTGATTCTGATTCTGCATGTGTGCGGCCTGTTCGCGATCATAATTCCGCTGTGGG TCCTTGGCCCTCGCCGCAGCGCGAAGGAGGTGTTTACCGAATTCAACAACGGCGGAGATTGGAACAGCGCGGGAA CTGCCACGCTCGTTGGATTCTCGACTACAATCACCGCGCTGATTGGATATGATTGTGCAGTGCACATGTGTAAGT CTATCTCTCGAATTGACGAACTTCGCTAATATTGTACAGCGGAGGAGATCAAAGATGCGTCTGAAACCCTGCCAA AGGCGATGATCACCTCTGTCTGCGTCAACGCCGCCTCCGGCTTCCTGATGCTGGTGACTGTCTGCTTCACACTAG GGGACATTGACGACATCCTGGCCAGCCCAACAGGATATCCGTTCATGCAGGTGTTCTATAACGCGACAGAGAGTC TGCCGGGAACGAACACCATGACCGCTATTCTAGTGCTGACTCTAACGGCGAGCACAATTACAGAGGTTGCAACGG CATCGCGCCAGTTGTGGTCTTTCGCGCGTGATCGCGGCCTTCCTTTCTCCGATTTCTTCGGCTATGTATGGTTTA TTCTCTTTCTACAGCTTTGAAAATACTAACAGCGCCAGGTAAACCCCGGTTGGAATATCCCCTTGAATTCCGTGA TGGTCTCGCTAGTAGTGACAGTCCTCTTGTCACTCATCAATATCGGCTCCACAACCGCACTACTCGCCATTGTGA CCCTGACCATTGGCGCAATGATGTCCTCATATATCATAACAATTGCATGCGTGCTCCTCAAGCGTATCAGAGGAG AGCCTCTCCCACCGCACAAATGGACGCTTGGCCGGTTCGGCATGGCAATTAATATCGGGGCGTTGTGCTTCCTCT GCCCGGTTTTCGTGTTCGCATTCTTCCCGCTCACTTCCACGGTGGAGCCAGAAACCATGAACTGGTGCGCAGTGA TGTACGGTGGGATTCTTATCGTCGCGGTGGTTTATTATGTGTTGCGGGGACGGCACCACTATATCCCGCCCGTGG CGCTGGTGAAGCGAGAGATGTAG |