© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8368.t1 |
| Gene name | |
| Location | scaffold_32:54561..56727 |
| Strand | - |
| Gene length (bp) | 2166 |
| Transcript length (bp) | 2055 |
| Coding sequence length (bp) | 2055 |
| Protein length (aa) | 685 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.9E-12 | 172 | 607 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 143 | 165 | 22 |
| 2 | 193 | 215 | 22 |
| 3 | 222 | 239 | 17 |
| 4 | 249 | 271 | 22 |
| 5 | 278 | 300 | 22 |
| 6 | 315 | 334 | 19 |
| 7 | 468 | 490 | 22 |
| 8 | 510 | 532 | 22 |
| 9 | 539 | 570 | 31 |
| 10 | 585 | 607 | 22 |
| 11 | 627 | 649 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 30.68 | 18.14 | 43.22 |
| 5d_25C | Five days - 25 degrees Celsius | 31.89 | 18.84 | 44.94 |
| 7d_25C | Seven days - 25 degrees Celsius | 30.79 | 18.21 | 43.36 |
| 10d_25C | Ten days - 25 degrees Celsius | 30.98 | 18.29 | 43.67 |
| 7d_15C | Seven days - 15 degrees Celsius | 28.31 | 16.48 | 40.14 |
| 7d_30C | Seven days - 30 degrees Celsius | 37.86 | 22.76 | 52.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.914102 | no |
| 3d_25C | 7d_25C | 0.992880 | no |
| 3d_25C | 7d_15C | 0.801636 | no |
| 3d_25C | 7d_30C | 0.414620 | no |
| 3d_25C | 10d_25C | 0.980083 | no |
| 5d_25C | 7d_25C | 0.920215 | no |
| 5d_25C | 7d_15C | 0.686773 | no |
| 5d_25C | 7d_30C | 0.521299 | no |
| 5d_25C | 10d_25C | 0.935399 | no |
| 7d_25C | 7d_15C | 0.787159 | no |
| 7d_25C | 7d_30C | 0.420406 | no |
| 7d_25C | 10d_25C | 0.987217 | no |
| 7d_15C | 7d_30C | 0.225774 | no |
| 7d_15C | 10d_25C | 0.771460 | no |
| 7d_30C | 10d_25C | 0.440543 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8368.t1 MSLNRISFLEGWERNPAAILSHPGSEDSDPDSYQDLPEGSISSSFPSTYSRLNFNPYAGPGWNESPEDPHEDRSS FFGPSFLGLSPTTTPEGRAGPAPVPGLGSAERTAHDSETTVARTPPWADTTGAYEVSAARRIAQVCTAVVYCFLA AGVVFGFAALKPILIREKVYRDLCSQAELEKDVDVCYGQEIRLNLMFTIAAVVTNVSALPVGTILDTYGPRVSGI IGSICLTIGAVLFGTANKLPFDGYIPGYLFLALGGPFVFIPSFHLSNTFPKRSGLILSMLTGAFDASSALFLLFR LLNEHTHGVVSIDNFFAAYLIVPVFIIAAQILIMPSTSYKTAGELVQQAEAQVVDEMRDRIDDTVNDRSERERQR MDRRLRRQSIVSQIQGLLDDGTASVISGNGINDSIFHTNIDASLDVNTTTGVHDTPTPPSQTHQQPTAPHPTPGG IWGVLHGHSALYQLRTPWFALITAFTVLMMLRINYFVATLRSQYTYLLSAEKAAQINTTFDILLPVGGLVSVPFI GTFLDVFQTRTVLFILVVSATVIGVLGCIPHPTAAYGNIILFVLYRPFYYTAVSDYAAKVFGFATFGKVYGLIIC LAGVGNFAQAGLDALTLRVWRGDPVPVNVGLTVLVAGVGSALVGFVAYQTSVLSGNKGDGEHHQDVREREPLLRN ETPGRVYGA* |
| Coding | >Pro_DTO377G3_2|g8368.t1 ATGTCCCTAAATCGCATCTCCTTCCTTGAAGGATGGGAACGCAACCCCGCGGCCATCCTCAGCCACCCTGGATCG GAGGATTCGGACCCCGACTCCTACCAGGATCTGCCCGAGGGATCCATTTCATCTTCATTTCCCTCCACATACAGC AGACTGAATTTCAACCCGTATGCGGGGCCAGGCTGGAATGAAAGCCCAGAGGATCCACACGAGGATCGATCCTCG TTTTTCGGGCCCTCATTTCTGGGCTTGTCTCCGACGACTACCCCCGAAGGACGTGCGGGTCCGGCTCCAGTGCCG GGACTGGGATCTGCTGAGCGGACTGCGCATGATTCAGAGACGACCGTTGCTCGCACGCCGCCTTGGGCCGATACT ACTGGTGCTTATGAAGTGAGCGCTGCTAGGAGGATTGCCCAGGTTTGCACGGCAGTCGTATACTGTTTTCTGGCG GCCGGGGTTGTTTTCGGCTTTGCAGCTCTCAAGCCCATCCTTATTCGAGAGAAAGTATATCGCGACCTCTGCTCC CAGGCGGAACTTGAGAAAGATGTCGATGTATGCTATGGGCAAGAGATTCGGCTAAACTTGATGTTTACTATCGCC GCTGTAGTAACCAATGTCTCAGCCCTACCTGTAGGCACAATCCTAGACACGTATGGACCACGAGTCAGTGGAATC ATCGGCAGTATCTGTCTCACCATAGGAGCAGTACTTTTTGGGACAGCCAACAAGCTTCCATTCGATGGATACATC CCGGGTTACTTATTCCTAGCACTGGGCGGGCCATTCGTCTTCATCCCATCCTTCCATCTATCAAATACATTCCCC AAACGATCAGGCCTGATCCTATCAATGTTGACAGGCGCCTTCGACGCTTCGAGTGCTCTATTCCTGCTTTTCAGG TTGTTGAACGAGCACACGCATGGCGTCGTATCAATCGACAATTTCTTCGCCGCATACCTCATCGTGCCGGTATTC ATCATCGCAGCACAGATCTTGATAATGCCGTCAACATCATACAAAACCGCCGGCGAACTCGTGCAACAAGCCGAA GCACAGGTCGTAGATGAGATGCGCGATCGCATAGATGACACGGTCAATGACCGCAGCGAGCGCGAGCGCCAGCGT ATGGACAGACGACTCCGTCGCCAAAGCATCGTCAGCCAGATCCAAGGTCTACTAGATGATGGCACAGCATCCGTA ATTTCCGGCAATGGCATCAACGACTCCATCTTCCACACGAACATCGACGCCTCGCTCGACGTAAATACCACCACA GGAGTTCACGACACTCCAACACCGCCCTCCCAAACGCACCAACAACCAACCGCTCCTCATCCAACACCAGGCGGA ATATGGGGCGTGCTCCACGGCCATAGCGCACTGTACCAACTACGCACACCATGGTTCGCACTAATAACAGCCTTC ACTGTTCTAATGATGCTACGCATAAATTACTTTGTCGCAACGCTGCGCTCACAATACACCTACCTGCTCTCGGCC GAGAAAGCCGCACAAATAAACACAACATTCGACATTCTCCTACCAGTCGGCGGACTCGTCTCCGTGCCGTTCATC GGCACATTCCTAGACGTATTCCAGACGCGCACTGTGCTCTTCATCCTTGTCGTGTCGGCGACCGTCATCGGCGTG CTGGGCTGTATACCGCATCCGACCGCGGCCTATGGGAATATCATTCTCTTCGTGCTGTACCGACCGTTCTATTAC ACTGCTGTATCGGACTACGCGGCCAAGGTGTTTGGGTTTGCGACGTTTGGGAAAGTCTACGGGCTTATTATTTGT CTTGCTGGTGTTGGGAATTTTGCGCAGGCGGGACTTGATGCGCTTACGTTGAGGGTTTGGAGGGGAGATCCTGTG CCTGTTAATGTTGGACTTACGGTGCTGGTTGCTGGGGTTGGCAGTGCACTTGTTGGGTTTGTTGCTTATCAGACG AGTGTTTTGAGTGGGAATAAGGGTGACGGTGAGCATCATCAGGATGTCAGGGAGAGGGAGCCGTTGTTGAGGAAT GAAACACCTGGGAGAGTGTATGGAGCTTGA |
| Transcript | >Pro_DTO377G3_2|g8368.t1 ATGTCCCTAAATCGCATCTCCTTCCTTGAAGGATGGGAACGCAACCCCGCGGCCATCCTCAGCCACCCTGGATCG GAGGATTCGGACCCCGACTCCTACCAGGATCTGCCCGAGGGATCCATTTCATCTTCATTTCCCTCCACATACAGC AGACTGAATTTCAACCCGTATGCGGGGCCAGGCTGGAATGAAAGCCCAGAGGATCCACACGAGGATCGATCCTCG TTTTTCGGGCCCTCATTTCTGGGCTTGTCTCCGACGACTACCCCCGAAGGACGTGCGGGTCCGGCTCCAGTGCCG GGACTGGGATCTGCTGAGCGGACTGCGCATGATTCAGAGACGACCGTTGCTCGCACGCCGCCTTGGGCCGATACT ACTGGTGCTTATGAAGTGAGCGCTGCTAGGAGGATTGCCCAGGTTTGCACGGCAGTCGTATACTGTTTTCTGGCG GCCGGGGTTGTTTTCGGCTTTGCAGCTCTCAAGCCCATCCTTATTCGAGAGAAAGTATATCGCGACCTCTGCTCC CAGGCGGAACTTGAGAAAGATGTCGATGTATGCTATGGGCAAGAGATTCGGCTAAACTTGATGTTTACTATCGCC GCTGTAGTAACCAATGTCTCAGCCCTACCTGTAGGCACAATCCTAGACACGTATGGACCACGAGTCAGTGGAATC ATCGGCAGTATCTGTCTCACCATAGGAGCAGTACTTTTTGGGACAGCCAACAAGCTTCCATTCGATGGATACATC CCGGGTTACTTATTCCTAGCACTGGGCGGGCCATTCGTCTTCATCCCATCCTTCCATCTATCAAATACATTCCCC AAACGATCAGGCCTGATCCTATCAATGTTGACAGGCGCCTTCGACGCTTCGAGTGCTCTATTCCTGCTTTTCAGG TTGTTGAACGAGCACACGCATGGCGTCGTATCAATCGACAATTTCTTCGCCGCATACCTCATCGTGCCGGTATTC ATCATCGCAGCACAGATCTTGATAATGCCGTCAACATCATACAAAACCGCCGGCGAACTCGTGCAACAAGCCGAA GCACAGGTCGTAGATGAGATGCGCGATCGCATAGATGACACGGTCAATGACCGCAGCGAGCGCGAGCGCCAGCGT ATGGACAGACGACTCCGTCGCCAAAGCATCGTCAGCCAGATCCAAGGTCTACTAGATGATGGCACAGCATCCGTA ATTTCCGGCAATGGCATCAACGACTCCATCTTCCACACGAACATCGACGCCTCGCTCGACGTAAATACCACCACA GGAGTTCACGACACTCCAACACCGCCCTCCCAAACGCACCAACAACCAACCGCTCCTCATCCAACACCAGGCGGA ATATGGGGCGTGCTCCACGGCCATAGCGCACTGTACCAACTACGCACACCATGGTTCGCACTAATAACAGCCTTC ACTGTTCTAATGATGCTACGCATAAATTACTTTGTCGCAACGCTGCGCTCACAATACACCTACCTGCTCTCGGCC GAGAAAGCCGCACAAATAAACACAACATTCGACATTCTCCTACCAGTCGGCGGACTCGTCTCCGTGCCGTTCATC GGCACATTCCTAGACGTATTCCAGACGCGCACTGTGCTCTTCATCCTTGTCGTGTCGGCGACCGTCATCGGCGTG CTGGGCTGTATACCGCATCCGACCGCGGCCTATGGGAATATCATTCTCTTCGTGCTGTACCGACCGTTCTATTAC ACTGCTGTATCGGACTACGCGGCCAAGGTGTTTGGGTTTGCGACGTTTGGGAAAGTCTACGGGCTTATTATTTGT CTTGCTGGTGTTGGGAATTTTGCGCAGGCGGGACTTGATGCGCTTACGTTGAGGGTTTGGAGGGGAGATCCTGTG CCTGTTAATGTTGGACTTACGGTGCTGGTTGCTGGGGTTGGCAGTGCACTTGTTGGGTTTGTTGCTTATCAGACG AGTGTTTTGAGTGGGAATAAGGGTGACGGTGAGCATCATCAGGATGTCAGGGAGAGGGAGCCGTTGTTGAGGAAT GAAACACCTGGGAGAGTGTATGGAGCTTGA |
| Gene | >Pro_DTO377G3_2|g8368.t1 ATGTCCCTAAATCGCATCTCCTTCCTTGAAGGATGGGAACGCAACCCCGCGGCCATCCTCAGCCACCCTGGATCG GAGGATTCGGACCCCGACTCCTACCAGGATCTGCCCGAGGGATCCATTTCATCTTCATTTCCCTCCACATACAGC AGACTGAATTTCAACCCGTATGCGGGGCCAGGCTGGAATGAAAGCCCAGAGGATCCACACGAGGATCGATCCTCG TTTTTCGGGCCCTCATTTCTGGGCTTGTCTCCGACGACTACCCCCGAAGGACGTGCGGGTCCGGCTCCAGTGCCG GGACTGGGATCTGCTGAGCGGACTGCGCATGATTCAGAGACGACCGTTGCTCGCACGCCGCCTTGGGCCGATACT ACTGGTGCTTATGAAGTGAGCGCTGCTAGGAGGATTGGTAGGTTGATCGAACTCGCATTATACTTCTTTTCATAT ACAGTGGCATGTTAACATTATAAAAGCCCAGGTTTGCACGGCAGTCGTATACTGTTTTCTGGCGGCCGGGGTTGT TTTCGGCTTTGCAGCTCTCAAGCCCATCCTTATTCGAGAGAAAGTATATCGCGACCTCTGCTCCCAGGCGGAACT TGAGAAAGATGTCGATGTATGCTATGGGCAAGAGATTCGGTATGTTTCCCCCGTGGTTGAAGATCACTCTTACTT ACACGCAACAGGCTAAACTTGATGTTTACTATCGCCGCTGTAGTAACCAATGTCTCAGCCCTACCTGTAGGCACA ATCCTAGACACGTATGGACCACGAGTCAGTGGAATCATCGGCAGTATCTGTCTCACCATAGGAGCAGTACTTTTT GGGACAGCCAACAAGCTTCCATTCGATGGATACATCCCGGGTTACTTATTCCTAGCACTGGGCGGGCCATTCGTC TTCATCCCATCCTTCCATCTATCAAATACATTCCCCAAACGATCAGGCCTGATCCTATCAATGTTGACAGGCGCC TTCGACGCTTCGAGTGCTCTATTCCTGCTTTTCAGGTTGTTGAACGAGCACACGCATGGCGTCGTATCAATCGAC AATTTCTTCGCCGCATACCTCATCGTGCCGGTATTCATCATCGCAGCACAGATCTTGATAATGCCGTCAACATCA TACAAAACCGCCGGCGAACTCGTGCAACAAGCCGAAGCACAGGTCGTAGATGAGATGCGCGATCGCATAGATGAC ACGGTCAATGACCGCAGCGAGCGCGAGCGCCAGCGTATGGACAGACGACTCCGTCGCCAAAGCATCGTCAGCCAG ATCCAAGGTCTACTAGATGATGGCACAGCATCCGTAATTTCCGGCAATGGCATCAACGACTCCATCTTCCACACG AACATCGACGCCTCGCTCGACGTAAATACCACCACAGGAGTTCACGACACTCCAACACCGCCCTCCCAAACGCAC CAACAACCAACCGCTCCTCATCCAACACCAGGCGGAATATGGGGCGTGCTCCACGGCCATAGCGCACTGTACCAA CTACGCACACCATGGTTCGCACTAATAACAGCCTTCACTGTTCTAATGATGCTACGCATAAATTACTTTGTCGCA ACGCTGCGCTCACAATACACCTACCTGCTCTCGGCCGAGAAAGCCGCACAAATAAACACAACATTCGACATTCTC CTACCAGTCGGCGGACTCGTCTCCGTGCCGTTCATCGGCACATTCCTAGACGTATTCCAGACGCGCACTGTGCTC TTCATCCTTGTCGTGTCGGCGACCGTCATCGGCGTGCTGGGCTGTATACCGCATCCGACCGCGGCCTATGGGAAT ATCATTCTCTTCGTGCTGTACCGACCGTTCTATTACACTGCTGTATCGGACTACGCGGCCAAGGTGTTTGGGTTT GCGACGTTTGGGAAAGTCTACGGGCTTATTATTTGTCTTGCTGGTGTTGGGAATTTTGCGCAGGCGGGACTTGAT GCGCTTACGTTGAGGGTTTGGAGGGGAGATCCTGTGCCTGTTAATGTTGGACTTACGGTGCTGGTTGCTGGGGTT GGCAGTGCACTTGTTGGGTTTGTTGCTTATCAGACGAGTGTTTTGAGTGGGAATAAGGGTGACGGTGAGCATCAT CAGGATGTCAGGGAGAGGGAGCCGTTGTTGAGGAATGAAACACCTGGGAGAGTGTATGGAGCTTGA |