© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g8363.t1 |
| Gene name | |
| Location | scaffold_32:38592..40341 |
| Strand | + |
| Gene length (bp) | 1749 |
| Transcript length (bp) | 1584 |
| Coding sequence length (bp) | 1584 |
| Protein length (aa) | 528 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01833 | TIG | IPT/TIG domain | 5.7E-09 | 19 | 100 |
| PF01833 | TIG | IPT/TIG domain | 1.6E-08 | 107 | 178 |
| PF01833 | TIG | IPT/TIG domain | 4.8E-11 | 194 | 277 |
| PF01833 | TIG | IPT/TIG domain | 2.6E-09 | 283 | 360 |
| PF01833 | TIG | IPT/TIG domain | 2.8E-15 | 364 | 443 |
| PF01833 | TIG | IPT/TIG domain | 3.3E-10 | 447 | 526 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 53.93 | 32.54 | 75.31 |
| 5d_25C | Five days - 25 degrees Celsius | 51.68 | 31.30 | 72.05 |
| 7d_25C | Seven days - 25 degrees Celsius | 53.30 | 32.41 | 74.19 |
| 10d_25C | Ten days - 25 degrees Celsius | 69.78 | 42.52 | 97.04 |
| 7d_15C | Seven days - 15 degrees Celsius | 41.43 | 24.64 | 58.23 |
| 7d_30C | Seven days - 30 degrees Celsius | 52.61 | 31.52 | 73.69 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.898288 | no |
| 3d_25C | 7d_25C | 0.975235 | no |
| 3d_25C | 7d_15C | 0.273134 | no |
| 3d_25C | 7d_30C | 0.944692 | no |
| 3d_25C | 10d_25C | 0.277510 | no |
| 5d_25C | 7d_25C | 0.928234 | no |
| 5d_25C | 7d_15C | 0.375592 | no |
| 5d_25C | 7d_30C | 0.961133 | no |
| 5d_25C | 10d_25C | 0.185265 | no |
| 7d_25C | 7d_15C | 0.297475 | no |
| 7d_25C | 7d_30C | 0.971434 | no |
| 7d_25C | 10d_25C | 0.248769 | no |
| 7d_15C | 7d_30C | 0.338937 | no |
| 7d_15C | 10d_25C | 0.014676 | yes |
| 7d_30C | 10d_25C | 0.226353 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 7610 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8363.t1 MISLECQALSGTYVVAPLPSLTSLSPTSGSISGGNTVTLTGTNLGFVNSVTFGGTAATSVVALSNNTVAAVVPST VTPGAVDVTVSDAAGNTSTLTGGYTYTTISAPTVTSLNPNNGPATGGTLVAVTGTGFVNATAVTFGTTSALSYTI VSGTLINAVSPPGTGTTNVFVTNPGGTSAADTGNVWTWNPTPTPTVTSLSPVSGPLSGGNVVTVTGTNLTGTISV TFGGVTAPFFVVLSSTALNATVPASTVAGTVDVVVTTPNGSSPINPGDQYTYIAGPAPTAVEPSADLISGGTQVA ITGSGLTGTTSVLFGTIPGTAINVVSDSEVDVTTPSHAIGTVPITVTSTGGTNSSLTFTFEAPPIISTITPAFGS TAGGTAVSISGAGLSNTNEVLFGATPATAQAIISDNQLTATSPPGPAGLAPVTVVTDAAFSDAVPFTYLGAPTLA ALSPTTGSRLGGNNVTLTGSGFTQATAVTFDTSGALFTVEDDGTITAVAPAHVALGAVPVTVTTPGGISGPQTYT YT* |
| Coding | >Pro_DTO377G3_2|g8363.t1 ATGATCAGTCTTGAGTGTCAGGCATTATCCGGTACATATGTGGTTGCTCCTTTGCCGAGTCTCACCTCACTGTCA CCAACCAGTGGGTCGATTTCTGGAGGGAACACGGTCACATTGACAGGAACAAACTTAGGATTTGTTAACTCTGTG ACATTCGGCGGCACGGCTGCGACTAGCGTGGTAGCACTTTCCAACAACACGGTAGCAGCGGTCGTCCCCTCAACC GTGACACCGGGAGCTGTAGACGTCACGGTCAGTGATGCAGCTGGCAATACCAGCACTCTGACCGGGGGTTATACA TACACTACGATATCAGCACCCACCGTCACATCTCTGAATCCCAATAACGGCCCTGCGACAGGCGGAACGTTGGTT GCGGTGACAGGAACTGGGTTTGTAAACGCCACGGCCGTGACTTTCGGCACAACTTCGGCTCTATCGTACACGATT GTTTCGGGCACTTTGATCAATGCTGTTTCTCCGCCTGGAACTGGTACAACTAATGTTTTCGTCACTAACCCGGGC GGAACGAGTGCGGCTGATACTGGCAATGTTTGGACTTGGAATCCTACTCCAACCCCGACTGTCACGAGTTTGTCC CCAGTCAGCGGACCATTGAGCGGCGGTAATGTCGTCACGGTGACCGGAACGAATTTGACTGGCACAATATCAGTC ACATTTGGTGGTGTTACAGCGCCCTTCTTCGTTGTCTTGTCAAGCACTGCCCTCAATGCGACAGTCCCCGCGTCG ACTGTCGCCGGTACGGTTGATGTGGTTGTTACAACACCTAATGGATCTAGTCCAATCAACCCGGGAGACCAGTAT ACTTACATTGCTGGCCCCGCACCCACAGCTGTGGAGCCGTCGGCAGATCTCATAAGTGGAGGTACACAGGTTGCG ATCACAGGAAGTGGTCTGACGGGAACTACGAGTGTGCTATTCGGAACCATCCCTGGTACCGCAATAAATGTTGTA TCCGACTCTGAAGTGGATGTGACTACACCTTCGCATGCAATTGGGACAGTACCAATTACGGTGACTTCTACTGGA GGGACCAACAGCTCACTGACCTTCACCTTCGAGGCTCCGCCGATTATATCTACGATCACCCCAGCCTTTGGTTCC ACTGCAGGAGGAACTGCAGTTTCCATCAGCGGCGCAGGTCTGTCGAATACAAATGAGGTTCTGTTTGGGGCCACA CCTGCTACGGCCCAAGCAATCATTTCGGACAACCAGCTGACAGCGACCTCCCCTCCTGGACCGGCCGGACTGGCT CCTGTGACTGTCGTGACTGATGCTGCTTTTAGCGATGCCGTGCCTTTCACTTATTTGGGCGCTCCGACTCTGGCA GCGCTGAGTCCTACCACGGGATCTCGCCTTGGGGGTAATAACGTAACCCTAACCGGGTCCGGATTCACTCAGGCT ACCGCAGTGACATTCGATACCTCTGGAGCCCTATTCACCGTTGAAGATGACGGCACTATCACTGCTGTTGCGCCT GCGCACGTCGCGCTTGGCGCCGTGCCCGTGACGGTCACAACCCCGGGCGGCATCAGTGGTCCCCAAACCTACACC TACACTTGA |
| Transcript | >Pro_DTO377G3_2|g8363.t1 ATGATCAGTCTTGAGTGTCAGGCATTATCCGGTACATATGTGGTTGCTCCTTTGCCGAGTCTCACCTCACTGTCA CCAACCAGTGGGTCGATTTCTGGAGGGAACACGGTCACATTGACAGGAACAAACTTAGGATTTGTTAACTCTGTG ACATTCGGCGGCACGGCTGCGACTAGCGTGGTAGCACTTTCCAACAACACGGTAGCAGCGGTCGTCCCCTCAACC GTGACACCGGGAGCTGTAGACGTCACGGTCAGTGATGCAGCTGGCAATACCAGCACTCTGACCGGGGGTTATACA TACACTACGATATCAGCACCCACCGTCACATCTCTGAATCCCAATAACGGCCCTGCGACAGGCGGAACGTTGGTT GCGGTGACAGGAACTGGGTTTGTAAACGCCACGGCCGTGACTTTCGGCACAACTTCGGCTCTATCGTACACGATT GTTTCGGGCACTTTGATCAATGCTGTTTCTCCGCCTGGAACTGGTACAACTAATGTTTTCGTCACTAACCCGGGC GGAACGAGTGCGGCTGATACTGGCAATGTTTGGACTTGGAATCCTACTCCAACCCCGACTGTCACGAGTTTGTCC CCAGTCAGCGGACCATTGAGCGGCGGTAATGTCGTCACGGTGACCGGAACGAATTTGACTGGCACAATATCAGTC ACATTTGGTGGTGTTACAGCGCCCTTCTTCGTTGTCTTGTCAAGCACTGCCCTCAATGCGACAGTCCCCGCGTCG ACTGTCGCCGGTACGGTTGATGTGGTTGTTACAACACCTAATGGATCTAGTCCAATCAACCCGGGAGACCAGTAT ACTTACATTGCTGGCCCCGCACCCACAGCTGTGGAGCCGTCGGCAGATCTCATAAGTGGAGGTACACAGGTTGCG ATCACAGGAAGTGGTCTGACGGGAACTACGAGTGTGCTATTCGGAACCATCCCTGGTACCGCAATAAATGTTGTA TCCGACTCTGAAGTGGATGTGACTACACCTTCGCATGCAATTGGGACAGTACCAATTACGGTGACTTCTACTGGA GGGACCAACAGCTCACTGACCTTCACCTTCGAGGCTCCGCCGATTATATCTACGATCACCCCAGCCTTTGGTTCC ACTGCAGGAGGAACTGCAGTTTCCATCAGCGGCGCAGGTCTGTCGAATACAAATGAGGTTCTGTTTGGGGCCACA CCTGCTACGGCCCAAGCAATCATTTCGGACAACCAGCTGACAGCGACCTCCCCTCCTGGACCGGCCGGACTGGCT CCTGTGACTGTCGTGACTGATGCTGCTTTTAGCGATGCCGTGCCTTTCACTTATTTGGGCGCTCCGACTCTGGCA GCGCTGAGTCCTACCACGGGATCTCGCCTTGGGGGTAATAACGTAACCCTAACCGGGTCCGGATTCACTCAGGCT ACCGCAGTGACATTCGATACCTCTGGAGCCCTATTCACCGTTGAAGATGACGGCACTATCACTGCTGTTGCGCCT GCGCACGTCGCGCTTGGCGCCGTGCCCGTGACGGTCACAACCCCGGGCGGCATCAGTGGTCCCCAAACCTACACC TACACTTGA |
| Gene | >Pro_DTO377G3_2|g8363.t1 ATGATCAGTAAGTGGATCAGGGTGCTCAGGGGATGATCAGGTGATACTCAGTGAGCAGATTACGTTAATTATATA ATTGCCCGTGATCAAGTCAGGGTACTCAGGGACGTGCTCATTTTTACTCAGTGATCAAAAAGCGGCAAGAAGTGA GCACTAAAACGGAAAGGGAAAGGTCTTGAGTGTCAGGCATTATCCGGTACATATGTGGTTGCTCCTTTGCCGAGT CTCACCTCACTGTCACCAACCAGTGGGTCGATTTCTGGAGGGAACACGGTCACATTGACAGGAACAAACTTAGGA TTTGTTAACTCTGTGACATTCGGCGGCACGGCTGCGACTAGCGTGGTAGCACTTTCCAACAACACGGTAGCAGCG GTCGTCCCCTCAACCGTGACACCGGGAGCTGTAGACGTCACGGTCAGTGATGCAGCTGGCAATACCAGCACTCTG ACCGGGGGTTATACATACACTACGATATCAGCACCCACCGTCACATCTCTGAATCCCAATAACGGCCCTGCGACA GGCGGAACGTTGGTTGCGGTGACAGGAACTGGGTTTGTAAACGCCACGGCCGTGACTTTCGGCACAACTTCGGCT CTATCGTACACGATTGTTTCGGGCACTTTGATCAATGCTGTTTCTCCGCCTGGAACTGGTACAACTAATGTTTTC GTCACTAACCCGGGCGGAACGAGTGCGGCTGATACTGGCAATGTTTGGACTTGGAATCCTACTCCAACCCCGACT GTCACGAGTTTGTCCCCAGTCAGCGGACCATTGAGCGGCGGTAATGTCGTCACGGTGACCGGAACGAATTTGACT GGCACAATATCAGTCACATTTGGTGGTGTTACAGCGCCCTTCTTCGTTGTCTTGTCAAGCACTGCCCTCAATGCG ACAGTCCCCGCGTCGACTGTCGCCGGTACGGTTGATGTGGTTGTTACAACACCTAATGGATCTAGTCCAATCAAC CCGGGAGACCAGTATACTTACATTGCTGGCCCCGCACCCACAGCTGTGGAGCCGTCGGCAGATCTCATAAGTGGA GGTACACAGGTTGCGATCACAGGAAGTGGTCTGACGGGAACTACGAGTGTGCTATTCGGAACCATCCCTGGTACC GCAATAAATGTTGTATCCGACTCTGAAGTGGATGTGACTACACCTTCGCATGCAATTGGGACAGTACCAATTACG GTGACTTCTACTGGAGGGACCAACAGCTCACTGACCTTCACCTTCGAGGCTCCGCCGATTATATCTACGATCACC CCAGCCTTTGGTTCCACTGCAGGAGGAACTGCAGTTTCCATCAGCGGCGCAGGTCTGTCGAATACAAATGAGGTT CTGTTTGGGGCCACACCTGCTACGGCCCAAGCAATCATTTCGGACAACCAGCTGACAGCGACCTCCCCTCCTGGA CCGGCCGGACTGGCTCCTGTGACTGTCGTGACTGATGCTGCTTTTAGCGATGCCGTGCCTTTCACTTATTTGGGC GCTCCGACTCTGGCAGCGCTGAGTCCTACCACGGGATCTCGCCTTGGGGGTAATAACGTAACCCTAACCGGGTCC GGATTCACTCAGGCTACCGCAGTGACATTCGATACCTCTGGAGCCCTATTCACCGTTGAAGATGACGGCACTATC ACTGCTGTTGCGCCTGCGCACGTCGCGCTTGGCGCCGTGCCCGTGACGGTCACAACCCCGGGCGGCATCAGTGGT CCCCAAACCTACACCTACACTTGA |