Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8343.t1
Gene name
Locationscaffold_31:229250..229681
Strand+
Gene length (bp)431
Transcript length (bp)282
Coding sequence length (bp)282
Protein length (aa) 94

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 38 0.5

Transmembrane Domains

Domain # Start End Length
1 15 37 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 9.33 0.0 19.13
5d_25C Five days - 25 degrees Celsius 8.21 0.0 17.79
7d_25C Seven days - 25 degrees Celsius 7.11 0.0 15.52
10d_25C Ten days - 25 degrees Celsius 11.65 0.0 23.53
7d_15C Seven days - 15 degrees Celsius 14.23 0.0 28.66
7d_30C Seven days - 30 degrees Celsius 16.27 0.0 32.65

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.894004 no
3d_25C 7d_25C 0.745022 no
3d_25C 7d_15C 0.530808 no
3d_25C 7d_30C 0.401186 no
3d_25C 10d_25C 0.777654 no
5d_25C 7d_25C 0.886383 no
5d_25C 7d_15C 0.429870 no
5d_25C 7d_30C 0.324148 no
5d_25C 10d_25C 0.656255 no
7d_25C 7d_15C 0.286389 no
7d_25C 7d_30C 0.214529 no
7d_25C 10d_25C 0.492763 no
7d_15C 7d_30C 0.869315 no
7d_15C 10d_25C 0.789483 no
7d_30C 10d_25C 0.641176 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8343.t1
MVLMSHAVQRSIEDITMLTAYQLLACACYGPIGSALAHKYGKRPQFIFATIMGFIGTLGELSKGLAPRSLGVLLL
QSWEICVSFTSDLSGLVC*
Coding >Pro_DTO377G3_2|g8343.t1
ATGGTCTTGATGTCGCACGCTGTGCAGCGATCTATTGAAGATATCACAATGCTTACCGCATATCAATTGCTTGCG
TGTGCTTGTTACGGACCAATTGGATCTGCTCTGGCACATAAATACGGCAAACGGCCACAATTTATCTTCGCTACC
ATCATGGGATTCATTGGAACCCTTGGCGAATTATCCAAGGGTTTAGCTCCGCGGTCTTTGGGAGTTTTACTGTTG
CAGTCATGGGAGATATGTGTTTCGTTCACCAGCGATCTCTCCGGACTGGTCTGTTAG
Transcript >Pro_DTO377G3_2|g8343.t1
ATGGTCTTGATGTCGCACGCTGTGCAGCGATCTATTGAAGATATCACAATGCTTACCGCATATCAATTGCTTGCG
TGTGCTTGTTACGGACCAATTGGATCTGCTCTGGCACATAAATACGGCAAACGGCCACAATTTATCTTCGCTACC
ATCATGGGATTCATTGGAACCCTTGGCGAATTATCCAAGGGTTTAGCTCCGCGGTCTTTGGGAGTTTTACTGTTG
CAGTCATGGGAGATATGTGTTTCGTTCACCAGCGATCTCTCCGGACTGGTCTGTTAG
Gene >Pro_DTO377G3_2|g8343.t1
ATGGTCTTGATGTCGCACGCTGTGCAGCGATCTATTGAAGATATCACAATGCTTACCGCATATCAATTGCTTGCG
TGTGCTTGTTACGGGTATGTCTCATATATGTCTTGATACGGGCGTTGAGCTAATATATGATTAGACCAATTGGAT
CTGCTCTGGCACATAAATACGGCAAACGGCCACAATTTATCTTCGCTACCATCATGGGATTCATTGGAACCCTTG
TATGTTGCACAACCAGCGATAACTACAATGTTATATTAGCAGGGCGAATTATCCAAGGGTTTAGCTCCGCGGTCT
TTGGGAGTTTTACTGTTGCAGTCATGGGAGATATGTGTGTCAATTTAACCTCCTGCCTACGTCTTACAACGCTGA
CTGGGAGAATAAAAGGTGTTTCGTTCACCAGCGATCTCTCCGGACTGGTCTGTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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