Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8326.t1
Gene name
Locationscaffold_31:190383..190734
Strand-
Gene length (bp)351
Transcript length (bp)351
Coding sequence length (bp)351
Protein length (aa) 117

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 7.14 0.0 14.37
5d_25C Five days - 25 degrees Celsius 2.99 0.0 6.74
7d_25C Seven days - 25 degrees Celsius 2.55 0.0 6.27
10d_25C Ten days - 25 degrees Celsius 0.17 0.0 0.66
7d_15C Seven days - 15 degrees Celsius 5.97 0.0 12.13
7d_30C Seven days - 30 degrees Celsius 2.03 0.0 5.10

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.206335 no
3d_25C 7d_25C 0.164929 no
3d_25C 7d_15C 0.824055 no
3d_25C 7d_30C 0.113116 no
3d_25C 10d_25C 0.356374 no
5d_25C 7d_25C 0.888830 no
5d_25C 7d_15C 0.359843 no
5d_25C 7d_30C 0.708550 no
5d_25C 10d_25C 0.356410 no
7d_25C 7d_15C 0.256497 no
7d_25C 7d_30C 0.843437 no
7d_25C 10d_25C 0.356538 no
7d_15C 7d_30C 0.177586 no
7d_15C 10d_25C 0.356374 no
7d_30C 10d_25C 0.358190 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8326.t1
MQSTFTYLVYFLSFWATMVEALTRYQTTPPSDAIVVHDRQSLNDLVKIHSDTVLYAENGGYYLKNMEEEVVAITA
DDLCKELDAVFASIDAEVGSGSEDGESGSLGGANVTKGNSV*
Coding >Pro_DTO377G3_2|g8326.t1
ATGCAATCCACCTTCACCTACCTTGTGTACTTCCTATCCTTCTGGGCCACCATGGTTGAAGCTCTTACTCGGTAT
CAGACCACGCCCCCGAGCGACGCCATTGTCGTCCATGACAGACAATCCCTCAACGATCTAGTCAAGATTCACTCG
GATACAGTTCTCTACGCCGAGAATGGAGGGTATTACCTCAAGAACATGGAAGAAGAGGTTGTTGCCATCACTGCC
GACGACCTGTGCAAGGAGCTGGACGCTGTTTTTGCCAGTATCGATGCCGAAGTTGGCTCTGGGTCTGAAGATGGA
GAATCTGGATCTCTCGGTGGGGCAAATGTTACGAAGGGGAACTCTGTCTGA
Transcript >Pro_DTO377G3_2|g8326.t1
ATGCAATCCACCTTCACCTACCTTGTGTACTTCCTATCCTTCTGGGCCACCATGGTTGAAGCTCTTACTCGGTAT
CAGACCACGCCCCCGAGCGACGCCATTGTCGTCCATGACAGACAATCCCTCAACGATCTAGTCAAGATTCACTCG
GATACAGTTCTCTACGCCGAGAATGGAGGGTATTACCTCAAGAACATGGAAGAAGAGGTTGTTGCCATCACTGCC
GACGACCTGTGCAAGGAGCTGGACGCTGTTTTTGCCAGTATCGATGCCGAAGTTGGCTCTGGGTCTGAAGATGGA
GAATCTGGATCTCTCGGTGGGGCAAATGTTACGAAGGGGAACTCTGTCTGA
Gene >Pro_DTO377G3_2|g8326.t1
ATGCAATCCACCTTCACCTACCTTGTGTACTTCCTATCCTTCTGGGCCACCATGGTTGAAGCTCTTACTCGGTAT
CAGACCACGCCCCCGAGCGACGCCATTGTCGTCCATGACAGACAATCCCTCAACGATCTAGTCAAGATTCACTCG
GATACAGTTCTCTACGCCGAGAATGGAGGGTATTACCTCAAGAACATGGAAGAAGAGGTTGTTGCCATCACTGCC
GACGACCTGTGCAAGGAGCTGGACGCTGTTTTTGCCAGTATCGATGCCGAAGTTGGCTCTGGGTCTGAAGATGGA
GAATCTGGATCTCTCGGTGGGGCAAATGTTACGAAGGGGAACTCTGTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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