Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8315.t1
Gene name
Locationscaffold_31:168322..169006
Strand+
Gene length (bp)684
Transcript length (bp)528
Coding sequence length (bp)528
Protein length (aa) 176

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 7.35 1.24 13.47
5d_25C Five days - 25 degrees Celsius 3.46 0.00 7.05
7d_25C Seven days - 25 degrees Celsius 5.28 0.41 10.15
10d_25C Ten days - 25 degrees Celsius 3.91 0.02 7.79
7d_15C Seven days - 15 degrees Celsius 16.56 4.89 28.23
7d_30C Seven days - 30 degrees Celsius 4.10 0.12 8.09

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.146877 no
3d_25C 7d_25C 0.588640 no
3d_25C 7d_15C 0.048648 yes
3d_25C 7d_30C 0.275637 no
3d_25C 10d_25C 0.243279 no
5d_25C 7d_25C 0.524365 no
5d_25C 7d_15C 0.002297 yes
5d_25C 7d_30C 0.827913 no
5d_25C 10d_25C 0.887694 no
7d_25C 7d_15C 0.021921 yes
7d_25C 7d_30C 0.732558 no
7d_25C 10d_25C 0.680085 no
7d_15C 7d_30C 0.004450 yes
7d_15C 10d_25C 0.004045 yes
7d_30C 10d_25C 0.956705 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8315.t1
MKFFATVALLATAVAAAPSQKLFNLRTSGSSNSSHNDLYLSVGHGLASDPLNSEAVFSGASASNAAAFSFINGTI
ILDTEAKSPWTLDLISVEGTRKGRAQISVKPTSGSGGFSISRQGVQGPSEIWDGWLWCPTNFEAGQLFPNLHFLS
KTVQEPALPEGCDRIQLNAIPTSSA*
Coding >Pro_DTO377G3_2|g8315.t1
ATGAAGTTCTTCGCCACCGTCGCTCTCCTAGCCACCGCTGTGGCCGCCGCCCCATCCCAAAAGCTCTTCAACCTC
AGGACTTCCGGTTCCAGCAACAGCTCTCACAACGACCTGTACCTCTCCGTCGGCCACGGGTTGGCCAGCGACCCG
CTTAACAGCGAAGCCGTCTTCTCTGGTGCCTCGGCTAGCAACGCTGCCGCCTTCTCCTTCATCAATGGCACCATT
ATCTTGGATACCGAGGCCAAGTCCCCTTGGACTCTTGACCTGATCAGCGTGGAAGGCACTCGCAAGGGGCGCGCC
CAGATCAGCGTCAAACCCACTTCCGGCTCGGGAGGCTTCTCTATCAGCCGCCAGGGCGTTCAGGGACCCAGTGAG
ATCTGGGATGGATGGCTGTGGTGCCCCACCAATTTCGAGGCCGGCCAGTTGTTCCCCAACTTGCACTTCCTCAGC
AAGACTGTTCAGGAACCTGCACTTCCGGAAGGATGTGACAGGATCCAGCTCAATGCTATTCCCACCAGCTCTGCT
TAG
Transcript >Pro_DTO377G3_2|g8315.t1
ATGAAGTTCTTCGCCACCGTCGCTCTCCTAGCCACCGCTGTGGCCGCCGCCCCATCCCAAAAGCTCTTCAACCTC
AGGACTTCCGGTTCCAGCAACAGCTCTCACAACGACCTGTACCTCTCCGTCGGCCACGGGTTGGCCAGCGACCCG
CTTAACAGCGAAGCCGTCTTCTCTGGTGCCTCGGCTAGCAACGCTGCCGCCTTCTCCTTCATCAATGGCACCATT
ATCTTGGATACCGAGGCCAAGTCCCCTTGGACTCTTGACCTGATCAGCGTGGAAGGCACTCGCAAGGGGCGCGCC
CAGATCAGCGTCAAACCCACTTCCGGCTCGGGAGGCTTCTCTATCAGCCGCCAGGGCGTTCAGGGACCCAGTGAG
ATCTGGGATGGATGGCTGTGGTGCCCCACCAATTTCGAGGCCGGCCAGTTGTTCCCCAACTTGCACTTCCTCAGC
AAGACTGTTCAGGAACCTGCACTTCCGGAAGGATGTGACAGGATCCAGCTCAATGCTATTCCCACCAGCTCTGCT
TAG
Gene >Pro_DTO377G3_2|g8315.t1
ATGAAGTTCTTCGCCACCGTCGCTCTCCTAGCCACCGCTGTGGCCGCCGCCCCATCCCAAAAGCTCTTCAACCTC
AGGACTTCCGGTTCCAGCAACAGCTCTCACAACGACCTGTACCTCTCCGTCGGCCACGGGTTGGCCAGCGACCCG
CTTAACAGCGAAGCCGTCTTCTCTGGTGCCTCGGCTAGCAACGCTGCCGCCTTCTCCTTCATCAATGGCACCATT
ATCTTGGATACCGAGGCCAAGTCCCCTTGGACTCTTGACCTGATCAGCGTGGAAGGTAAGCTTAGCCCTGTCCTA
CCTTTGAATGTGACTGTTACCGAGCCCAGATCACTAACGATATTGGTACTATATAGGCACTCGCAAGGGGCGCGC
CCAGATCAGCGTCAAACCCACTTCCGGCTCGGGAGGCTTCTCTATCAGCCGCCAGGGCGTTCAGGGACCCAGTGA
GATCTGGGATGGATGGCTGTGTAAGTTCTTCTATTTTTATACCCCTTTCCAAGGCTACATGATCGTGTTGAGTGC
AATGGCTGACTCCTTTTTTTTTCAGGGTGCCCCACCAATTTCGAGGCCGGCCAGTTGTTCCCCAACTTGCACTTC
CTCAGCAAGACTGTTCAGGAACCTGCACTTCCGGAAGGATGTGACAGGATCCAGCTCAATGCTATTCCCACCAGC
TCTGCTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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