© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8315.t1 |
| Gene name | |
| Location | scaffold_31:168322..169006 |
| Strand | + |
| Gene length (bp) | 684 |
| Transcript length (bp) | 528 |
| Coding sequence length (bp) | 528 |
| Protein length (aa) | 176 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 7.35 | 1.24 | 13.47 |
| 5d_25C | Five days - 25 degrees Celsius | 3.46 | 0.00 | 7.05 |
| 7d_25C | Seven days - 25 degrees Celsius | 5.28 | 0.41 | 10.15 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.91 | 0.02 | 7.79 |
| 7d_15C | Seven days - 15 degrees Celsius | 16.56 | 4.89 | 28.23 |
| 7d_30C | Seven days - 30 degrees Celsius | 4.10 | 0.12 | 8.09 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.146877 | no |
| 3d_25C | 7d_25C | 0.588640 | no |
| 3d_25C | 7d_15C | 0.048648 | yes |
| 3d_25C | 7d_30C | 0.275637 | no |
| 3d_25C | 10d_25C | 0.243279 | no |
| 5d_25C | 7d_25C | 0.524365 | no |
| 5d_25C | 7d_15C | 0.002297 | yes |
| 5d_25C | 7d_30C | 0.827913 | no |
| 5d_25C | 10d_25C | 0.887694 | no |
| 7d_25C | 7d_15C | 0.021921 | yes |
| 7d_25C | 7d_30C | 0.732558 | no |
| 7d_25C | 10d_25C | 0.680085 | no |
| 7d_15C | 7d_30C | 0.004450 | yes |
| 7d_15C | 10d_25C | 0.004045 | yes |
| 7d_30C | 10d_25C | 0.956705 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8315.t1 MKFFATVALLATAVAAAPSQKLFNLRTSGSSNSSHNDLYLSVGHGLASDPLNSEAVFSGASASNAAAFSFINGTI ILDTEAKSPWTLDLISVEGTRKGRAQISVKPTSGSGGFSISRQGVQGPSEIWDGWLWCPTNFEAGQLFPNLHFLS KTVQEPALPEGCDRIQLNAIPTSSA* |
| Coding | >Pro_DTO377G3_2|g8315.t1 ATGAAGTTCTTCGCCACCGTCGCTCTCCTAGCCACCGCTGTGGCCGCCGCCCCATCCCAAAAGCTCTTCAACCTC AGGACTTCCGGTTCCAGCAACAGCTCTCACAACGACCTGTACCTCTCCGTCGGCCACGGGTTGGCCAGCGACCCG CTTAACAGCGAAGCCGTCTTCTCTGGTGCCTCGGCTAGCAACGCTGCCGCCTTCTCCTTCATCAATGGCACCATT ATCTTGGATACCGAGGCCAAGTCCCCTTGGACTCTTGACCTGATCAGCGTGGAAGGCACTCGCAAGGGGCGCGCC CAGATCAGCGTCAAACCCACTTCCGGCTCGGGAGGCTTCTCTATCAGCCGCCAGGGCGTTCAGGGACCCAGTGAG ATCTGGGATGGATGGCTGTGGTGCCCCACCAATTTCGAGGCCGGCCAGTTGTTCCCCAACTTGCACTTCCTCAGC AAGACTGTTCAGGAACCTGCACTTCCGGAAGGATGTGACAGGATCCAGCTCAATGCTATTCCCACCAGCTCTGCT TAG |
| Transcript | >Pro_DTO377G3_2|g8315.t1 ATGAAGTTCTTCGCCACCGTCGCTCTCCTAGCCACCGCTGTGGCCGCCGCCCCATCCCAAAAGCTCTTCAACCTC AGGACTTCCGGTTCCAGCAACAGCTCTCACAACGACCTGTACCTCTCCGTCGGCCACGGGTTGGCCAGCGACCCG CTTAACAGCGAAGCCGTCTTCTCTGGTGCCTCGGCTAGCAACGCTGCCGCCTTCTCCTTCATCAATGGCACCATT ATCTTGGATACCGAGGCCAAGTCCCCTTGGACTCTTGACCTGATCAGCGTGGAAGGCACTCGCAAGGGGCGCGCC CAGATCAGCGTCAAACCCACTTCCGGCTCGGGAGGCTTCTCTATCAGCCGCCAGGGCGTTCAGGGACCCAGTGAG ATCTGGGATGGATGGCTGTGGTGCCCCACCAATTTCGAGGCCGGCCAGTTGTTCCCCAACTTGCACTTCCTCAGC AAGACTGTTCAGGAACCTGCACTTCCGGAAGGATGTGACAGGATCCAGCTCAATGCTATTCCCACCAGCTCTGCT TAG |
| Gene | >Pro_DTO377G3_2|g8315.t1 ATGAAGTTCTTCGCCACCGTCGCTCTCCTAGCCACCGCTGTGGCCGCCGCCCCATCCCAAAAGCTCTTCAACCTC AGGACTTCCGGTTCCAGCAACAGCTCTCACAACGACCTGTACCTCTCCGTCGGCCACGGGTTGGCCAGCGACCCG CTTAACAGCGAAGCCGTCTTCTCTGGTGCCTCGGCTAGCAACGCTGCCGCCTTCTCCTTCATCAATGGCACCATT ATCTTGGATACCGAGGCCAAGTCCCCTTGGACTCTTGACCTGATCAGCGTGGAAGGTAAGCTTAGCCCTGTCCTA CCTTTGAATGTGACTGTTACCGAGCCCAGATCACTAACGATATTGGTACTATATAGGCACTCGCAAGGGGCGCGC CCAGATCAGCGTCAAACCCACTTCCGGCTCGGGAGGCTTCTCTATCAGCCGCCAGGGCGTTCAGGGACCCAGTGA GATCTGGGATGGATGGCTGTGTAAGTTCTTCTATTTTTATACCCCTTTCCAAGGCTACATGATCGTGTTGAGTGC AATGGCTGACTCCTTTTTTTTTCAGGGTGCCCCACCAATTTCGAGGCCGGCCAGTTGTTCCCCAACTTGCACTTC CTCAGCAAGACTGTTCAGGAACCTGCACTTCCGGAAGGATGTGACAGGATCCAGCTCAATGCTATTCCCACCAGC TCTGCTTAG |