Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8309.t1
Gene name
Locationscaffold_31:149717..150066
Strand+
Gene length (bp)349
Transcript length (bp)294
Coding sequence length (bp)294
Protein length (aa) 98

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 1.0E-06 42 88

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.39 0.0 1.24
5d_25C Five days - 25 degrees Celsius 0.47 0.0 1.08
7d_25C Seven days - 25 degrees Celsius 1.61 0.0 3.50
10d_25C Ten days - 25 degrees Celsius 4.10 0.0 9.81
7d_15C Seven days - 15 degrees Celsius 0.59 0.0 1.46
7d_30C Seven days - 30 degrees Celsius 0.37 0.0 0.99

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.000000 no
3d_25C 7d_25C 0.522532 no
3d_25C 7d_15C 1.000000 no
3d_25C 7d_30C 1.000000 no
3d_25C 10d_25C 0.449521 no
5d_25C 7d_25C 0.513781 no
5d_25C 7d_15C 1.000000 no
5d_25C 7d_30C 1.000000 no
5d_25C 10d_25C 0.359843 no
7d_25C 7d_15C 0.580720 no
7d_25C 7d_30C 0.483049 no
7d_25C 10d_25C 0.398838 no
7d_15C 7d_30C 1.000000 no
7d_15C 10d_25C 0.322241 no
7d_30C 10d_25C 0.409984 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8309.t1
MVAIGVRSLLCILGIASLGTSAAVNTNTVQGWQLTQYCTEFYTVSNGETCWDIIARNQNRFTMSQLLCWNDDINP
WCSNLIPGRQVCVAVERPGPVC*
Coding >Pro_DTO377G3_2|g8309.t1
ATGGTTGCCATCGGTGTCCGATCTCTCCTATGCATTCTGGGAATTGCTTCCCTTGGCACATCTGCCGCCGTCAAC
ACCAATACCGTCCAAGGCTGGCAGCTGACACAATATTGTACCGAGTTCTATACTGTCAGTAATGGAGAGACCTGC
TGGGACATCATCGCGCGGAACCAGAATAGGTTCACCATGAGCCAGCTTCTGTGCTGGAACGACGACATTAACCCC
TGGTGCTCGAATCTGATTCCAGGCCGACAGGTCTGTGTTGCAGTCGAGCGTCCCGGGCCTGTCTGCTAG
Transcript >Pro_DTO377G3_2|g8309.t1
ATGGTTGCCATCGGTGTCCGATCTCTCCTATGCATTCTGGGAATTGCTTCCCTTGGCACATCTGCCGCCGTCAAC
ACCAATACCGTCCAAGGCTGGCAGCTGACACAATATTGTACCGAGTTCTATACTGTCAGTAATGGAGAGACCTGC
TGGGACATCATCGCGCGGAACCAGAATAGGTTCACCATGAGCCAGCTTCTGTGCTGGAACGACGACATTAACCCC
TGGTGCTCGAATCTGATTCCAGGCCGACAGGTCTGTGTTGCAGTCGAGCGTCCCGGGCCTGTCTGCTAG
Gene >Pro_DTO377G3_2|g8309.t1
ATGGTTGCCATCGGTGTCCGATCTCTCCTATGCATTCTGGGAATTGCTTCCCTTGGCACATCTGCCGCCGTCAAC
ACCAATACCGTCCAAGGCTGGCAGCTGACACAATATTGTGAGTTAAGCTAAAACAAATCCCTCTATCTCAAGCTA
GACTGACGTAAAATCAGGTACCGAGTTCTATACTGTCAGTAATGGAGAGACCTGCTGGGACATCATCGCGCGGAA
CCAGAATAGGTTCACCATGAGCCAGCTTCTGTGCTGGAACGACGACATTAACCCCTGGTGCTCGAATCTGATTCC
AGGCCGACAGGTCTGTGTTGCAGTCGAGCGTCCCGGGCCTGTCTGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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