Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8309.t1
Gene name
Locationscaffold_31:149717..150066
Strand+
Gene length (bp)349
Transcript length (bp)294
Coding sequence length (bp)294
Protein length (aa) 98

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 9.3E-07 42 88

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8309.t1
MVAIGVRSLLCILGIASLGTSAAVNTNTVQGWQLTQYCTEFYTVSNGETCWDIIARNQNRFTMSQLLCWNDDINP
WCSNLIPGRQVCVAVERPGPVC*
Coding >Pro_DTO377G3_2|g8309.t1
ATGGTTGCCATCGGTGTCCGATCTCTCCTATGCATTCTGGGAATTGCTTCCCTTGGCACATCTGCCGCCGTCAAC
ACCAATACCGTCCAAGGCTGGCAGCTGACACAATATTGTACCGAGTTCTATACTGTCAGTAATGGAGAGACCTGC
TGGGACATCATCGCGCGGAACCAGAATAGGTTCACCATGAGCCAGCTTCTGTGCTGGAACGACGACATTAACCCC
TGGTGCTCGAATCTGATTCCAGGCCGACAGGTCTGTGTTGCAGTCGAGCGTCCCGGGCCTGTCTGCTAG
Transcript >Pro_DTO377G3_2|g8309.t1
ATGGTTGCCATCGGTGTCCGATCTCTCCTATGCATTCTGGGAATTGCTTCCCTTGGCACATCTGCCGCCGTCAAC
ACCAATACCGTCCAAGGCTGGCAGCTGACACAATATTGTACCGAGTTCTATACTGTCAGTAATGGAGAGACCTGC
TGGGACATCATCGCGCGGAACCAGAATAGGTTCACCATGAGCCAGCTTCTGTGCTGGAACGACGACATTAACCCC
TGGTGCTCGAATCTGATTCCAGGCCGACAGGTCTGTGTTGCAGTCGAGCGTCCCGGGCCTGTCTGCTAG
Gene >Pro_DTO377G3_2|g8309.t1
ATGGTTGCCATCGGTGTCCGATCTCTCCTATGCATTCTGGGAATTGCTTCCCTTGGCACATCTGCCGCCGTCAAC
ACCAATACCGTCCAAGGCTGGCAGCTGACACAATATTGTGAGTTAAGCTAAAACAAATCCCTCTATCTCAAGCTA
GACTGACGTAAAATCAGGTACCGAGTTCTATACTGTCAGTAATGGAGAGACCTGCTGGGACATCATCGCGCGGAA
CCAGAATAGGTTCACCATGAGCCAGCTTCTGTGCTGGAACGACGACATTAACCCCTGGTGCTCGAATCTGATTCC
AGGCCGACAGGTCTGTGTTGCAGTCGAGCGTCCCGGGCCTGTCTGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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