© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8300.t1 |
| Gene name | |
| Location | scaffold_31:124099..126413 |
| Strand | - |
| Gene length (bp) | 2314 |
| Transcript length (bp) | 2247 |
| Coding sequence length (bp) | 2247 |
| Protein length (aa) | 749 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01490 | Aa_trans | Transmembrane amino acid transporter protein | 9.4E-85 | 347 | 729 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 378 | 400 | 22 |
| 2 | 426 | 445 | 19 |
| 3 | 460 | 482 | 22 |
| 4 | 487 | 509 | 22 |
| 5 | 529 | 551 | 22 |
| 6 | 564 | 586 | 22 |
| 7 | 609 | 631 | 22 |
| 8 | 652 | 669 | 17 |
| 9 | 679 | 701 | 22 |
| 10 | 714 | 736 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 38.07 | 23.05 | 53.09 |
| 5d_25C | Five days - 25 degrees Celsius | 35.86 | 21.52 | 50.21 |
| 7d_25C | Seven days - 25 degrees Celsius | 32.98 | 19.78 | 46.19 |
| 10d_25C | Ten days - 25 degrees Celsius | 34.96 | 20.99 | 48.94 |
| 7d_15C | Seven days - 15 degrees Celsius | 42.64 | 25.89 | 59.39 |
| 7d_30C | Seven days - 30 degrees Celsius | 32.80 | 19.64 | 45.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.854139 | no |
| 3d_25C | 7d_25C | 0.601298 | no |
| 3d_25C | 7d_15C | 0.689598 | no |
| 3d_25C | 7d_30C | 0.583403 | no |
| 3d_25C | 10d_25C | 0.779519 | no |
| 5d_25C | 7d_25C | 0.792128 | no |
| 5d_25C | 7d_15C | 0.516183 | no |
| 5d_25C | 7d_30C | 0.775863 | no |
| 5d_25C | 10d_25C | 0.944287 | no |
| 7d_25C | 7d_15C | 0.283629 | no |
| 7d_25C | 7d_30C | 0.987527 | no |
| 7d_25C | 10d_25C | 0.860706 | no |
| 7d_15C | 7d_30C | 0.270703 | no |
| 7d_15C | 10d_25C | 0.427070 | no |
| 7d_30C | 10d_25C | 0.843836 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8300.t1 MADNGEGPSLNPARSVPIASSSARSRSPAPEFGSRQASMARLASPVPSPSLGTSLSSRQGIPASRPVTNTTTEQE FSRSIANPSSIPGPGHSILASQLQESLGRSPPRFGTPSRHNGSPAVHSTLDNRPLASQYGSFDTKNGVDSSSIAP VEDPEVIKRHLVTEHTDNQSEIATSLGGEDTFSSLQLQGGDITRQVYRWAEDAEAEAAGRFLRSKSFSVSRPRPE TDTEDIDTIRVPGGFRRDYLRRAAGSPHRGDAHGSNVGPPHGHGAPQLPTTSFLEFLTLYGHFAGEELEEDDEVL GPDEYFSSDAWDEPDDGRESGEDAALLPPETPGRKKRKHKQRSPVGTTTTTGAVLLLLKSFVGTGILFLPRAFLN GGMLFSSMVLLGVSILSYYAFILLVNTRTKIEGSFGDIGGILYGKHMRRIILGSIVLSQLGFVAAYIVFVSQNLQ AFVLAVSRCATFIDIKYMVLLQLVIFLPLSLIRDISKLGFTALIADVFILLGLLYIYYYDISTLVDQGGISDIVS FNPTTWSMFIGTAIFTYEGIGLIIPIQESMKQPNRFPGVLAGVMVLITFIFLSAGALSYAAYGSATKTVILLNLP QDDKFVNVVQFLYSLAILLSTPLQLFPAIRIMENELFTRSGKYNPYIKWKKNGFRFFLVMVCALIAWCGANDLDK FVSLVGSFACVPLIYVYPPLLHLRACAASKRQAVADVTLAVFGAICCVYTTYLTLMSWMGPDVPQSPGYCDSL* |
| Coding | >Pro_DTO377G3_2|g8300.t1 ATGGCGGATAATGGCGAGGGTCCATCCCTAAATCCAGCTCGATCTGTGCCGATAGCCTCGTCCTCCGCGCGCTCG AGGTCCCCCGCACCTGAGTTCGGTAGCAGACAGGCTTCCATGGCACGCCTCGCATCCCCAGTGCCCTCTCCTTCA TTAGGAACGTCCTTGTCATCACGACAGGGTATTCCGGCCAGCCGACCTGTTACAAACACCACCACCGAGCAGGAG TTTTCCAGATCGATTGCCAATCCATCCTCGATCCCCGGTCCTGGACATTCTATCCTTGCATCCCAACTCCAAGAA AGCCTCGGTCGTTCGCCGCCGAGATTTGGAACTCCGTCACGACACAACGGATCCCCTGCGGTGCATTCGACGTTA GATAACCGACCGTTGGCCTCTCAGTATGGCTCTTTCGATACTAAAAACGGAGTCGACTCGTCGAGCATAGCTCCG GTAGAAGACCCTGAAGTTATCAAGCGGCATCTGGTCACGGAACACACAGATAATCAGTCGGAAATTGCGACCAGC CTTGGTGGCGAAGATACTTTCTCGAGTCTGCAGCTTCAAGGTGGTGATATTACACGACAAGTTTACCGTTGGGCG GAGGATGCCGAAGCTGAAGCCGCAGGGCGATTCTTGCGCAGCAAGAGTTTCAGCGTCAGTCGACCAAGGCCGGAG ACGGATACGGAAGACATTGACACAATTCGGGTACCAGGAGGGTTTCGCAGGGATTACCTACGAAGAGCAGCTGGA AGTCCACACCGCGGAGATGCCCACGGGTCAAACGTAGGGCCGCCCCATGGACACGGCGCACCTCAACTGCCGACT ACCAGCTTCTTGGAGTTCTTGACTCTCTATGGACACTTTGCCGGAGAAGAATTGGAGGAAGATGATGAGGTACTA GGGCCGGATGAGTACTTTTCGTCTGATGCCTGGGACGAGCCAGATGATGGCAGAGAGTCTGGAGAAGACGCAGCG CTGTTGCCGCCTGAAACACCGGGTCGGAAGAAGAGAAAGCACAAGCAACGCTCACCGGTAGGGACAACTACCACA ACAGGTGCAGTACTCTTGCTGCTCAAATCCTTTGTAGGTACCGGTATTTTGTTCCTACCTCGAGCCTTCCTGAAT GGTGGTATGCTCTTTAGTAGCATGGTGCTTCTGGGAGTCTCGATTCTCAGCTATTATGCTTTCATTCTTTTGGTC AATACTCGCACGAAGATCGAAGGGTCCTTCGGTGACATCGGTGGCATTCTATACGGCAAGCACATGCGACGCATC ATTCTCGGATCAATTGTCCTGAGTCAATTAGGCTTTGTGGCAGCGTACATTGTCTTCGTCTCGCAAAATTTGCAG GCATTCGTGCTAGCTGTGAGCAGGTGCGCAACGTTCATTGACATCAAGTACATGGTTTTGTTGCAGCTGGTCATC TTCCTGCCCCTGTCTTTGATTCGGGACATCAGCAAACTTGGGTTTACCGCCCTGATTGCTGATGTCTTCATTCTG TTGGGTCTCCTATATATCTACTACTACGATATCAGCACTCTGGTTGACCAGGGCGGCATCTCAGATATCGTTTCC TTCAATCCAACAACCTGGTCCATGTTCATCGGTACCGCCATCTTCACCTACGAAGGTATCGGTCTCATCATTCCG ATTCAAGAATCAATGAAGCAGCCAAACAGGTTCCCTGGTGTCCTGGCCGGCGTCATGGTTCTCATTACCTTTATC TTCCTCTCTGCCGGTGCCCTGAGCTACGCGGCGTATGGATCGGCAACGAAAACCGTCATCCTTCTTAACCTCCCC CAGGATGACAAATTTGTCAACGTGGTCCAGTTCCTCTATTCACTTGCCATTCTGCTGAGCACTCCGTTGCAGCTC TTCCCTGCTATCCGCATTATGGAGAACGAGCTTTTCACCCGCAGTGGCAAGTACAACCCATATATCAAGTGGAAG AAGAACGGCTTCCGTTTCTTCCTGGTTATGGTCTGTGCCCTTATCGCCTGGTGTGGTGCGAATGATCTAGACAAG TTCGTTTCGCTAGTCGGAAGCTTTGCTTGTGTTCCATTGATCTACGTATACCCGCCCCTCCTGCACCTACGCGCT TGTGCTGCCTCCAAGCGCCAGGCGGTTGCCGACGTAACTCTTGCTGTCTTCGGCGCCATATGCTGCGTCTATACG ACGTACCTGACCCTCATGAGCTGGATGGGCCCTGACGTCCCTCAAAGCCCGGGATACTGTGACTCTCTTTGA |
| Transcript | >Pro_DTO377G3_2|g8300.t1 ATGGCGGATAATGGCGAGGGTCCATCCCTAAATCCAGCTCGATCTGTGCCGATAGCCTCGTCCTCCGCGCGCTCG AGGTCCCCCGCACCTGAGTTCGGTAGCAGACAGGCTTCCATGGCACGCCTCGCATCCCCAGTGCCCTCTCCTTCA TTAGGAACGTCCTTGTCATCACGACAGGGTATTCCGGCCAGCCGACCTGTTACAAACACCACCACCGAGCAGGAG TTTTCCAGATCGATTGCCAATCCATCCTCGATCCCCGGTCCTGGACATTCTATCCTTGCATCCCAACTCCAAGAA AGCCTCGGTCGTTCGCCGCCGAGATTTGGAACTCCGTCACGACACAACGGATCCCCTGCGGTGCATTCGACGTTA GATAACCGACCGTTGGCCTCTCAGTATGGCTCTTTCGATACTAAAAACGGAGTCGACTCGTCGAGCATAGCTCCG GTAGAAGACCCTGAAGTTATCAAGCGGCATCTGGTCACGGAACACACAGATAATCAGTCGGAAATTGCGACCAGC CTTGGTGGCGAAGATACTTTCTCGAGTCTGCAGCTTCAAGGTGGTGATATTACACGACAAGTTTACCGTTGGGCG GAGGATGCCGAAGCTGAAGCCGCAGGGCGATTCTTGCGCAGCAAGAGTTTCAGCGTCAGTCGACCAAGGCCGGAG ACGGATACGGAAGACATTGACACAATTCGGGTACCAGGAGGGTTTCGCAGGGATTACCTACGAAGAGCAGCTGGA AGTCCACACCGCGGAGATGCCCACGGGTCAAACGTAGGGCCGCCCCATGGACACGGCGCACCTCAACTGCCGACT ACCAGCTTCTTGGAGTTCTTGACTCTCTATGGACACTTTGCCGGAGAAGAATTGGAGGAAGATGATGAGGTACTA GGGCCGGATGAGTACTTTTCGTCTGATGCCTGGGACGAGCCAGATGATGGCAGAGAGTCTGGAGAAGACGCAGCG CTGTTGCCGCCTGAAACACCGGGTCGGAAGAAGAGAAAGCACAAGCAACGCTCACCGGTAGGGACAACTACCACA ACAGGTGCAGTACTCTTGCTGCTCAAATCCTTTGTAGGTACCGGTATTTTGTTCCTACCTCGAGCCTTCCTGAAT GGTGGTATGCTCTTTAGTAGCATGGTGCTTCTGGGAGTCTCGATTCTCAGCTATTATGCTTTCATTCTTTTGGTC AATACTCGCACGAAGATCGAAGGGTCCTTCGGTGACATCGGTGGCATTCTATACGGCAAGCACATGCGACGCATC ATTCTCGGATCAATTGTCCTGAGTCAATTAGGCTTTGTGGCAGCGTACATTGTCTTCGTCTCGCAAAATTTGCAG GCATTCGTGCTAGCTGTGAGCAGGTGCGCAACGTTCATTGACATCAAGTACATGGTTTTGTTGCAGCTGGTCATC TTCCTGCCCCTGTCTTTGATTCGGGACATCAGCAAACTTGGGTTTACCGCCCTGATTGCTGATGTCTTCATTCTG TTGGGTCTCCTATATATCTACTACTACGATATCAGCACTCTGGTTGACCAGGGCGGCATCTCAGATATCGTTTCC TTCAATCCAACAACCTGGTCCATGTTCATCGGTACCGCCATCTTCACCTACGAAGGTATCGGTCTCATCATTCCG ATTCAAGAATCAATGAAGCAGCCAAACAGGTTCCCTGGTGTCCTGGCCGGCGTCATGGTTCTCATTACCTTTATC TTCCTCTCTGCCGGTGCCCTGAGCTACGCGGCGTATGGATCGGCAACGAAAACCGTCATCCTTCTTAACCTCCCC CAGGATGACAAATTTGTCAACGTGGTCCAGTTCCTCTATTCACTTGCCATTCTGCTGAGCACTCCGTTGCAGCTC TTCCCTGCTATCCGCATTATGGAGAACGAGCTTTTCACCCGCAGTGGCAAGTACAACCCATATATCAAGTGGAAG AAGAACGGCTTCCGTTTCTTCCTGGTTATGGTCTGTGCCCTTATCGCCTGGTGTGGTGCGAATGATCTAGACAAG TTCGTTTCGCTAGTCGGAAGCTTTGCTTGTGTTCCATTGATCTACGTATACCCGCCCCTCCTGCACCTACGCGCT TGTGCTGCCTCCAAGCGCCAGGCGGTTGCCGACGTAACTCTTGCTGTCTTCGGCGCCATATGCTGCGTCTATACG ACGTACCTGACCCTCATGAGCTGGATGGGCCCTGACGTCCCTCAAAGCCCGGGATACTGTGACTCTCTTTGA |
| Gene | >Pro_DTO377G3_2|g8300.t1 ATGGCGGATAATGGCGAGGGTCCATCCCTAAATCCAGCTCGATCTGTGCCGATAGCCTCGTCCTCCGCGCGCTCG AGGTCCCCCGCACCTGAGTTCGGTAGCAGACAGGCTTCCATGGCACGCCTCGCATCCCCAGTGCCCTCTCCTTCA TTAGGAACGTCCTTGTCATCACGACAGGGTATTCCGGCCAGCCGACCTGTTACAAACACCACCACCGAGCAGGAG TTTTCCAGATCGATTGCCAATCCATCCTCGATCCCCGGTCCTGGACATTCTATCCTTGCATCCCAACTCCAAGAA AGCCTCGGTCGTTCGCCGCCGAGATTTGGAACTCCGTCACGACACAACGGATCCCCTGCGGTGCATTCGACGTTA GATAACCGACCGTTGGCCTCTCAGTATGGCTCTTTCGATACTAAAAACGGAGTCGACTCGTCGAGCATAGCTCCG GTAGAAGACCCTGAAGTTATCAAGCGGCATCTGGTCACGGAACACACAGATAATCAGTCGGAAATTGCGACCAGC CTTGGTGGCGAAGATACTTTCTCGAGTCTGCAGCTTCAAGGTGGTGATATTACACGACAAGTTTACCGTTGGGCG GAGGATGCCGAAGCTGAAGCCGCAGGGCGATTCTTGCGCAGCAAGAGTTTCAGCGTCAGTCGACCAAGGCCGGAG ACGGATACGGAAGACATTGACACAATTCGGGTACCAGGAGGGTTTCGCAGGGATTACCTACGAAGAGCAGCTGGA AGTCCACACCGCGGAGATGCCCACGGGTCAAACGTAGGGCCGCCCCATGGACACGGCGCACCTCAACTGCCGACT ACCAGCTTCTTGGAGTTCTTGACTCTCTATGGACACTTTGCCGGAGAAGAATTGGAGGAAGATGATGAGGTACTA GGGCCGGATGAGTACTTTTCGTCTGATGCCTGGGACGAGCCAGATGATGGCAGAGAGTCTGGAGAAGACGCAGCG CTGTTGCCGCCTGAAACACCGGGTCGGAAGAAGAGAAAGCACAAGCAACGCTCACCGGTAGGGACAACTACCACA ACAGGTGCAGTACTCTTGCTGCTCAAATCCTTTGTAGGTACCGGTATTTTGTTCCTACCTCGAGCCTTCCTGAAT GGTGGTATGCTCTTTAGTAGCATGGTGCTTCTGGGAGTCTCGATTCTCAGCTATTATGCTTTCATTCTTTTGGTC AATACTCGCACGAAGATCGAAGGGTCCTTCGGTGACATCGGTGGCATTCTATACGGCAAGCACATGCGACGCATC ATTCTCGGATCAATTGTCCTGAGTCAATTAGGCTTTGTGGCAGCGTACATTGTCTTCGTCTCGCAAAATTTGCAG GCATTCGTGCTAGCTGTGAGCAGGTGCGCAACGTTCATTGACATCAAGTACATGGTTTTGTTGCAGCTGGTCATC TTCCTGCCCCTGTCTTTGATTCGGGACATCAGCAAACTTGGGTTTACCGCCCTGATTGCTGATGTCTTCATTCTG TTGGGTCTCCTATATATCTACTACTACGATATCAGCACTCTGGTTGACCAGGGCGGCATCTCAGATATCGTTTCC TTCAATCCAACAACCTGGTCCATGTTCATCGGTACCGCCATCTTCACCTACGAAGGTATCGGTCTCATCATTCCG ATTCAAGAATCAATGAAGCAGCCAAACAGGTTCCCTGGTGTCCTGGCCGGCGTCATGGTTCTCATTACCTTTATC TTCCTCTCTGCCGGTGCCCTGAGCTACGCGGCGTATGGATCGGCAACGAAAACCGTCATCCTTCTTAACCTCCCC CAGGATGACAAATTTGTCAACGTGGTCCAGTTCCTCTATTCACTTGCCATTCTGCTGAGCACTCCGTTGCAGCTC TTCCCTGCTATCCGCATTATGGAGAACGAGCTTTTCACCCGCAGTGGCAAGTACAACCCATATATCAAGTGGAAG AAGAACGGCTTCCGTTTCTTCCTGGTTATGGTCTGTGCCCTTATCGCCTGGTGTGGTGCGAATGATCTAGACAAG TTCGTTTCGCTAGTCGGAAGCTTTGCTTGTGTTCCATTGATCTACGTATACCCGGTATGTCTTATCATGTGTCCT CCTAATCACCACAGAACTGTATGACTGACTCAGTATATCGCTGTAGCCCCTCCTGCACCTACGCGCTTGTGCTGC CTCCAAGCGCCAGGCGGTTGCCGACGTAACTCTTGCTGTCTTCGGCGCCATATGCTGCGTCTATACGACGTACCT GACCCTCATGAGCTGGATGGGCCCTGACGTCCCTCAAAGCCCGGGATACTGTGACTCTCTTTGA |