Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8297.t1
Gene name
Locationscaffold_31:119811..120589
Strand-
Gene length (bp)778
Transcript length (bp)528
Coding sequence length (bp)528
Protein length (aa) 176

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus 1.3E-21 67 165
PF00281 Ribosomal_L5 Ribosomal protein L5 3.4E-18 10 63

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 37 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8297.t1
MSAQVAKAENPCRSLRLSKLVLNISVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRTFGIRRNEKISVHVTIR
GAKAEEILERGLKVKEYELRKRNFSETGNFGFGISEHIDLGIKYDPGIGIYGMDFFVCMDRPGARVAKRRRCQSK
IGVNHRITTSETMKWYKTKYDGIIR*
Coding >Pro_DTO377G3_2|g8297.t1
ATGTCCGCCCAAGTTGCTAAGGCCGAGAACCCCTGCCGATCCCTTCGCTTGTCGAAGTTGGTCCTGAACATCTCC
GTCGGAGAGTCCGGTGATAGACTCACTCGTGCCGCCAAGGTTCTCGAGCAGCTGTCCGGTCAGACCCCCGTCTAC
AGCAAGGCCCGTTACACCGTCCGTACCTTCGGTATCCGCCGTAACGAAAAGATCTCCGTCCACGTCACCATCCGC
GGCGCCAAGGCTGAGGAGATCCTCGAGCGTGGCCTCAAGGTCAAGGAGTACGAGCTCCGCAAGCGCAACTTCTCT
GAGACCGGTAACTTTGGATTCGGTATCAGCGAGCACATCGATCTCGGTATCAAGTACGATCCCGGCATTGGTATC
TACGGCATGGACTTCTTCGTCTGCATGGACCGCCCCGGTGCCCGTGTTGCCAAGCGCCGTCGCTGCCAGTCCAAG
ATCGGTGTCAACCACCGCATCACCACCTCCGAGACCATGAAGTGGTACAAGACCAAGTACGATGGAATTATCCGT
TAA
Transcript >Pro_DTO377G3_2|g8297.t1
ATGTCCGCCCAAGTTGCTAAGGCCGAGAACCCCTGCCGATCCCTTCGCTTGTCGAAGTTGGTCCTGAACATCTCC
GTCGGAGAGTCCGGTGATAGACTCACTCGTGCCGCCAAGGTTCTCGAGCAGCTGTCCGGTCAGACCCCCGTCTAC
AGCAAGGCCCGTTACACCGTCCGTACCTTCGGTATCCGCCGTAACGAAAAGATCTCCGTCCACGTCACCATCCGC
GGCGCCAAGGCTGAGGAGATCCTCGAGCGTGGCCTCAAGGTCAAGGAGTACGAGCTCCGCAAGCGCAACTTCTCT
GAGACCGGTAACTTTGGATTCGGTATCAGCGAGCACATCGATCTCGGTATCAAGTACGATCCCGGCATTGGTATC
TACGGCATGGACTTCTTCGTCTGCATGGACCGCCCCGGTGCCCGTGTTGCCAAGCGCCGTCGCTGCCAGTCCAAG
ATCGGTGTCAACCACCGCATCACCACCTCCGAGACCATGAAGTGGTACAAGACCAAGTACGATGGAATTATCCGT
TAA
Gene >Pro_DTO377G3_2|g8297.t1
ATGGTACGTTCAGCTCCTTGCAATCCAAACCAAGCATTCCCAATAGAATGTATTGTTTTATGTCATTCCATTTGA
TATGGGCTGCAACCTGGACATTTTCGTCTTGCGCGCACCCAATCTTCAATTCCCTGAAATATCTATTCTTTGACT
AGATATACCATCCACAAGTTGAGACTAACATGATGCAGTCCGCCCAAGTTGCTAAGGCCGAGAACCCCTGCCGAT
CCCTTCGCTTGTCGAAGTTGGTCCTGAACATCTCCGTCGGAGAGTCCGGTGATAGACTCACTCGTGCCGCCAAGG
TTCTCGAGCAGCTGTCCGGTCAGACCCCCGTCTACAGCAAGGCCCGTTACACCGTCCGTACCTTCGGTATCCGCC
GTAACGAAAAGATCTCCGTCCACGTCACCATCCGCGGCGCCAAGGCTGAGGAGATCCTCGAGCGTGGCCTCAAGG
TCAAGGAGTACGAGCTCCGCAAGCGCAACTTCTCTGAGACCGGTAACTTTGGATTCGGTATCAGCGAGCACATCG
ATCTCGGTATCAAGTACGATCCCGGCATTGGTATCTACGGCATGGACTTCTTCGTCTGCATGTGAGTTTCTTACT
GATCACCGGATTTGGAGGCAATTTATCTCGGATATTAACAAATAATTCCAGGGACCGCCCCGGTGCCCGTGTTGC
CAAGCGCCGTCGCTGCCAGTCCAAGATCGGTGTCAACCACCGCATCACCACCTCCGAGACCATGAAGTGGTACAA
GACCAAGTACGATGGAATTATCCGTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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