© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8283.t1 |
| Gene name | |
| Location | scaffold_31:85247..85771 |
| Strand | + |
| Gene length (bp) | 524 |
| Transcript length (bp) | 279 |
| Coding sequence length (bp) | 279 |
| Protein length (aa) | 93 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10281 | Ish1 | Putative nuclear envelope organisation protein | 7.4E-08 | 48 | 81 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 32 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 92.17 | 32.08 | 152.26 |
| 5d_25C | Five days - 25 degrees Celsius | 119.84 | 46.05 | 193.63 |
| 7d_25C | Seven days - 25 degrees Celsius | 117.39 | 44.55 | 190.23 |
| 10d_25C | Ten days - 25 degrees Celsius | 176.05 | 76.05 | 276.06 |
| 7d_15C | Seven days - 15 degrees Celsius | 91.76 | 31.35 | 152.16 |
| 7d_30C | Seven days - 30 degrees Celsius | 88.87 | 28.58 | 149.16 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.521557 | no |
| 3d_25C | 7d_25C | 0.564838 | no |
| 3d_25C | 7d_15C | 0.993860 | no |
| 3d_25C | 7d_30C | 0.950584 | no |
| 3d_25C | 10d_25C | 0.047134 | yes |
| 5d_25C | 7d_25C | 0.970109 | no |
| 5d_25C | 7d_15C | 0.513285 | no |
| 5d_25C | 7d_30C | 0.480720 | no |
| 5d_25C | 10d_25C | 0.267726 | no |
| 7d_25C | 7d_15C | 0.551295 | no |
| 7d_25C | 7d_30C | 0.514274 | no |
| 7d_25C | 10d_25C | 0.231487 | no |
| 7d_15C | 7d_30C | 0.957734 | no |
| 7d_15C | 10d_25C | 0.043201 | yes |
| 7d_30C | 10d_25C | 0.045957 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8283.t1 MPTPLDRALHSKNLFLGFAGMVTAVAAYTILGSDVLPAQADPTGDPENWTMDEMRRWLKARGLLPSEAATREELL ERVKANLRIPRKTSAKP* |
| Coding | >Pro_DTO377G3_2|g8283.t1 ATGCCGACCCCTTTGGACCGAGCATTGCATTCTAAGAATCTATTCCTCGGATTCGCAGGAATGGTCACTGCAGTG GCAGCCTATACTATCTTGGGCAGCGATGTCCTTCCCGCACAAGCAGATCCCACCGGTGACCCTGAAAACTGGACA ATGGATGAGATGCGAAGATGGCTTAAAGCGAGAGGGCTTCTACCGAGTGAGGCTGCGACGCGTGAGGAGCTGCTT GAAAGAGTCAAAGCAAACCTCCGCATACCGCGCAAGACATCGGCTAAGCCATAA |
| Transcript | >Pro_DTO377G3_2|g8283.t1 ATGCCGACCCCTTTGGACCGAGCATTGCATTCTAAGAATCTATTCCTCGGATTCGCAGGAATGGTCACTGCAGTG GCAGCCTATACTATCTTGGGCAGCGATGTCCTTCCCGCACAAGCAGATCCCACCGGTGACCCTGAAAACTGGACA ATGGATGAGATGCGAAGATGGCTTAAAGCGAGAGGGCTTCTACCGAGTGAGGCTGCGACGCGTGAGGAGCTGCTT GAAAGAGTCAAAGCAAACCTCCGCATACCGCGCAAGACATCGGCTAAGCCATAA |
| Gene | >Pro_DTO377G3_2|g8283.t1 ATGCCGACCCCTTTGGACCGAGCATTGCATTCTAAGGTACTACGTCTGTCTATACTTTTATGATAGATATCTAAT ACTGGACTCGATAGAATCTATTCCTCGGTAGACGATCTCAAGTCAAGGCACTTGGCAACATTTTCTGACCACTAT CTTCCTATGTAGGATTCGCAGGAATGGTCACTGCAGTGGCAGCCTATACTATCTTGGGCAGCGATGTCCTTCCCG CACAAGCAGATCCCACCGGTGGTAAGAGTAATTATTATTAGGTATCTAACATGGGCTAATGGAAGCTAGACCCTG AAAACTGGACAATGGATGAGATGCGAAGATGGCTTAAAGCGGTATGTTTGAGTGATTTGTTCGGACATGACTGTG TTCAGATAATCATACATTCTTGTGAATCGTACACTGACCGATTATCTCAGAGAGGGCTTCTACCGAGTGAGGCTG CGACGCGTGAGGAGCTGCTTGAAAGAGTCAAAGCAAACCTCCGCATACCGCGCAAGACATCGGCTAAGCCATAA |