Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8278.t1
Gene name
Locationscaffold_31:76803..78671
Strand+
Gene length (bp)1868
Transcript length (bp)1620
Coding sequence length (bp)1620
Protein length (aa) 540

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04042 DNA_pol_E_B DNA polymerase alpha/epsilon subunit B 7.9E-43 215 470
PF18018 DNA_pol_D_N DNA polymerase delta subunit OB-fold domain 5.5E-38 50 189

GO

GO Term Description Terminal node
GO:0003677 DNA binding Yes
GO:0006260 DNA replication Yes
GO:0008152 metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0006259 DNA metabolic process No
GO:0008150 biological_process No
GO:0006725 cellular aromatic compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0003676 nucleic acid binding No
GO:0044260 cellular macromolecule metabolic process No
GO:0044238 primary metabolic process No
GO:0005488 binding No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0003674 molecular_function No
GO:0006807 nitrogen compound metabolic process No
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0090304 nucleic acid metabolic process No
GO:0044237 cellular metabolic process No
GO:0009987 cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 40 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8278.t1
MVPDAEDYTFLCPPSEEEQEQEPIYRNHSYYGPGYTFHLPAGAGRHYQQQYDDMYFLRLAKLKPAVEQVATDAWD
GLIIAGEKVRRVDRVLDVRQGELCWVAGTVYMHLPMKPNILDDLNQENFTSAPPPRLTYTDPSDPSLTQIMMEDE
SGRLRLTGKFLQSTQLATGAIIAALGTENADGDFEVIDIKLPDLAPQLQRWGGNAPLAGKEHGKIAFVSGLEITG
TSSDTLALELLTDYLLGYTGFSGNAENSPSLGSSKISRLIIAGNSIGANIIEDVAVTSFGDAEAEEAQPRKYGYD
CSAYNAAPITELDNFLAEILPSIPITLMPGEKDPANFSLPQQGIHRTMFPQAREYSAPPVRGDEKPEVSWFDSVT
NPWDGDVEGWRVWGCSGQNVDDVLRYIPIEGDDSSPEKETDSNARMRIMEAMLRWRCGVPTAPDTIWSYPYQSEE
PYVIESCPHIFFAGNQPQFKTTTIEGGVPPRLDGDTEMTGAADSSDTARVRLLALPKFSETGELILVDTETLEVE
VVRFGVFNGQEEQK*
Coding >Pro_DTO377G3_2|g8278.t1
ATGGTACCGGACGCCGAGGATTACACTTTCTTGTGTCCCCCCAGCGAGGAGGAACAGGAACAAGAGCCAATTTAC
CGCAATCACTCCTATTACGGTCCTGGTTATACCTTCCACCTACCAGCTGGCGCAGGACGACACTATCAGCAGCAA
TATGACGACATGTACTTTTTGCGACTCGCAAAGTTGAAACCTGCCGTCGAACAAGTCGCGACGGATGCGTGGGAT
GGCCTCATTATCGCTGGAGAGAAGGTGCGACGTGTCGACCGAGTCCTCGATGTCCGACAAGGCGAGCTGTGTTGG
GTGGCCGGCACCGTATATATGCATTTGCCAATGAAGCCGAATATTTTGGATGATCTCAACCAAGAGAACTTCACT
TCTGCGCCCCCTCCCCGCCTCACCTACACCGACCCTTCAGACCCCTCTTTGACCCAAATTATGATGGAAGATGAG
TCTGGCCGCTTACGGCTCACCGGAAAATTCCTGCAGTCTACACAGCTGGCGACAGGTGCAATTATCGCGGCTTTG
GGCACTGAAAATGCGGATGGAGATTTCGAGGTTATTGATATCAAGCTTCCGGATTTGGCTCCGCAGCTTCAACGA
TGGGGGGGCAATGCTCCACTTGCTGGAAAGGAACACGGCAAAATCGCCTTCGTTAGTGGCCTGGAAATCACAGGA
ACATCAAGCGACACGCTTGCTTTGGAGCTATTGACGGATTATCTTCTGGGCTACACGGGATTCTCGGGGAACGCC
GAAAACAGTCCTTCCTTGGGCTCATCTAAAATCTCCCGCTTGATCATCGCAGGTAATTCAATTGGAGCCAACATA
ATTGAAGATGTGGCGGTGACAAGCTTCGGCGATGCTGAGGCAGAGGAAGCCCAGCCAAGAAAGTATGGCTATGAC
TGCTCTGCATACAATGCCGCGCCTATCACAGAACTCGATAACTTTCTAGCGGAGATTTTGCCCAGCATTCCTATC
ACACTCATGCCGGGCGAAAAAGATCCTGCGAACTTCTCTCTCCCTCAACAGGGGATCCATCGTACTATGTTCCCT
CAGGCAAGAGAATATTCCGCACCTCCTGTCAGAGGGGATGAAAAGCCTGAGGTGAGCTGGTTCGACAGTGTCACG
AACCCATGGGACGGCGACGTGGAAGGCTGGCGAGTATGGGGATGCAGCGGTCAGAATGTTGACGATGTTCTGCGG
TATATCCCTATTGAGGGTGATGATAGCAGCCCAGAAAAGGAGACAGATTCGAATGCTCGGATGCGAATCATGGAA
GCTATGCTTCGTTGGCGCTGCGGTGTTCCCACTGCGCCGGACACAATTTGGTCATATCCATACCAATCCGAGGAG
CCATATGTCATCGAGTCCTGTCCTCATATTTTTTTCGCTGGCAATCAACCACAGTTCAAGACTACCACGATTGAA
GGTGGCGTCCCTCCCCGCCTAGATGGCGACACTGAAATGACGGGTGCCGCTGATTCCTCTGATACAGCCCGTGTT
CGGCTGTTGGCACTTCCCAAATTCAGCGAAACTGGGGAGTTAATTCTGGTTGATACCGAAACGCTAGAGGTCGAG
GTGGTCCGGTTTGGAGTTTTCAACGGTCAGGAAGAACAAAAATAA
Transcript >Pro_DTO377G3_2|g8278.t1
ATGGTACCGGACGCCGAGGATTACACTTTCTTGTGTCCCCCCAGCGAGGAGGAACAGGAACAAGAGCCAATTTAC
CGCAATCACTCCTATTACGGTCCTGGTTATACCTTCCACCTACCAGCTGGCGCAGGACGACACTATCAGCAGCAA
TATGACGACATGTACTTTTTGCGACTCGCAAAGTTGAAACCTGCCGTCGAACAAGTCGCGACGGATGCGTGGGAT
GGCCTCATTATCGCTGGAGAGAAGGTGCGACGTGTCGACCGAGTCCTCGATGTCCGACAAGGCGAGCTGTGTTGG
GTGGCCGGCACCGTATATATGCATTTGCCAATGAAGCCGAATATTTTGGATGATCTCAACCAAGAGAACTTCACT
TCTGCGCCCCCTCCCCGCCTCACCTACACCGACCCTTCAGACCCCTCTTTGACCCAAATTATGATGGAAGATGAG
TCTGGCCGCTTACGGCTCACCGGAAAATTCCTGCAGTCTACACAGCTGGCGACAGGTGCAATTATCGCGGCTTTG
GGCACTGAAAATGCGGATGGAGATTTCGAGGTTATTGATATCAAGCTTCCGGATTTGGCTCCGCAGCTTCAACGA
TGGGGGGGCAATGCTCCACTTGCTGGAAAGGAACACGGCAAAATCGCCTTCGTTAGTGGCCTGGAAATCACAGGA
ACATCAAGCGACACGCTTGCTTTGGAGCTATTGACGGATTATCTTCTGGGCTACACGGGATTCTCGGGGAACGCC
GAAAACAGTCCTTCCTTGGGCTCATCTAAAATCTCCCGCTTGATCATCGCAGGTAATTCAATTGGAGCCAACATA
ATTGAAGATGTGGCGGTGACAAGCTTCGGCGATGCTGAGGCAGAGGAAGCCCAGCCAAGAAAGTATGGCTATGAC
TGCTCTGCATACAATGCCGCGCCTATCACAGAACTCGATAACTTTCTAGCGGAGATTTTGCCCAGCATTCCTATC
ACACTCATGCCGGGCGAAAAAGATCCTGCGAACTTCTCTCTCCCTCAACAGGGGATCCATCGTACTATGTTCCCT
CAGGCAAGAGAATATTCCGCACCTCCTGTCAGAGGGGATGAAAAGCCTGAGGTGAGCTGGTTCGACAGTGTCACG
AACCCATGGGACGGCGACGTGGAAGGCTGGCGAGTATGGGGATGCAGCGGTCAGAATGTTGACGATGTTCTGCGG
TATATCCCTATTGAGGGTGATGATAGCAGCCCAGAAAAGGAGACAGATTCGAATGCTCGGATGCGAATCATGGAA
GCTATGCTTCGTTGGCGCTGCGGTGTTCCCACTGCGCCGGACACAATTTGGTCATATCCATACCAATCCGAGGAG
CCATATGTCATCGAGTCCTGTCCTCATATTTTTTTCGCTGGCAATCAACCACAGTTCAAGACTACCACGATTGAA
GGTGGCGTCCCTCCCCGCCTAGATGGCGACACTGAAATGACGGGTGCCGCTGATTCCTCTGATACAGCCCGTGTT
CGGCTGTTGGCACTTCCCAAATTCAGCGAAACTGGGGAGTTAATTCTGGTTGATACCGAAACGCTAGAGGTCGAG
GTGGTCCGGTTTGGAGTTTTCAACGGTCAGGAAGAACAAAAATAA
Gene >Pro_DTO377G3_2|g8278.t1
ATGGTACCGGACGCCGAGGATTACACTTTCTTGTGTCCCCCCAGGTAATACCTCTTAATCCACTCTGCATCCAAG
CTGCTACGTTTCGGGGAGCTTTCGCTAACTATCTGCGATAGCGAGGAGGAACAGGAACAAGAGCCAATTTACCGC
AATCACTCCTATTACGGTCCTGGTTATACCTTCCACCTACCAGCTGGCGCAGGACGACACTATCAGCAGCAATAT
GACGACATGTACTTTTTGCGACTCGCAAAGTTGAAACCTGCCGTCGAACAAGTCGCGACGGATGCGTGGGATGGC
CTCATTGTAAGAGCACTCAGTCTTAGGAAATATTTTGCGCTCTCGGCTATGGAATTTCCTAACACCTGCTTGTGA
ATTAGATCGCTGGAGAGAAGGTGCGACGTGTCGACCGAGTCCTCGATGTCCGACAAGGCGAGCTGTGTTGGGTGG
CCGGCACCGTATATATGCATTTGCCAATGAAGCCGAATATTTTGGATGATCTCAACCAAGAGGTTCGTTTTCTAA
CCTTGCTGCTGCTTCTTCCACTGACAACCCATAGAACTTCACTTCTGCGCCCCCTCCCCGCCTCACCTACACCGA
CCCTTCAGACCCCTCTTTGACCCAAATTATGATGGAAGATGAGTCTGGCCGCTTACGGCTCACCGGAAAATTCCT
GCAGTCTACACAGCTGGCGACAGGTGCAATTATCGCGGCTTTGGGCACTGAAAATGCGGATGGAGATTTCGAGGT
TATTGATATCAAGCTTCCGGATTTGGCTCCGCAGCTTCAACGATGGGGGGGCAATGCTCCACTTGCTGGAAAGGA
ACACGGCAAAATCGCCTTCGTTAGTGGCCTGGAAATCACAGGAACATCAAGCGACACGCTTGCTTTGGAGCTATT
GACGGATTATCTTCTGGGCTACACGGGATTCTCGGGGAACGCCGAAAACAGTCCTTCCTTGGGCTCATCTAAAAT
CTCCCGCTTGATCATCGCAGGTAATTCAATTGGAGCCAACATAATTGAAGATGTGGCGGTGACAAGCTTCGGCGA
TGCTGAGGCAGAGGAAGCCCAGCCAAGAAAGTATGGCTATGACTGCTCTGCATACAATGCCGCGCCTATCACAGA
ACTCGATAACTTTCTAGCGGAGATTTTGCCCAGCATTCCTATCACACTCATGCCGGGCGAAAAAGATCCTGCGAA
CTTCTCTCTCCCTCAACAGGGGATCCATCGTACTATGTTCCCTCAGGCAAGAGAATATTCCGCACCTCCTGTCAG
AGGGGATGAAAAGCCTGAGGTGAGCTGGTTCGACAGTGTCACGAACCCATGGGACGGCGACGTGGAAGGCTGGCG
AGTATGGGGATGCAGCGGTCAGAATGTTGACGATGTTCTGCGGTATATCCCTATTGAGGGTGATGATAGCAGCCC
AGAAAAGGAGACAGATTCGAATGCTCGGATGCGAATCATGGAAGCTATGCTTCGTTGGCGCTGCGGTGTTCCCAC
TGCGCCGGACACAATTTGTATGCTTGGACACTTGAATCTTTCAGAGAAATTTATGCTAACAATACCCTTTAGGGT
CATATCCATACCAATCCGAGGAGCCATATGTCATCGAGTCCTGTCCTCATATTTTTTTCGCTGGCAATCAACCAC
AGTTCAAGACTACCACGATTGAAGGTGGCGTCCCTCCCCGCCTAGATGGCGACACTGAAATGACGGGTGCCGCTG
ATTCCTCTGATACAGCCCGTGTTCGGCTGTTGGCACTTCCCAAATTCAGCGAAACTGGGGAGTTAATTCTGGTTG
ATACCGAAACGCTAGAGGTCGAGGTGGTCCGGTTTGGAGTTTTCAACGGTCAGGAAGAACAAAAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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