© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g8277.t1 |
| Gene name | |
| Location | scaffold_31:75158..76205 |
| Strand | - |
| Gene length (bp) | 1047 |
| Transcript length (bp) | 1047 |
| Coding sequence length (bp) | 1047 |
| Protein length (aa) | 349 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03060 | NMO | Nitronate monooxygenase | 1.1E-52 | 5 | 326 |
| PF00478 | IMPDH | IMP dehydrogenase / GMP reductase domain | 3.2E-09 | 2 | 236 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0018580 | nitronate monooxygenase activity | Yes |
| GO:0003824 | catalytic activity | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | No |
| GO:0016703 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) | No |
| GO:0004497 | monooxygenase activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.13 | 1.40 | 8.86 |
| 5d_25C | Five days - 25 degrees Celsius | 3.88 | 0.86 | 6.90 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.20 | 0.29 | 4.11 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.78 | 0.17 | 3.39 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.25 | 1.03 | 7.47 |
| 7d_30C | Seven days - 30 degrees Celsius | 8.04 | 2.65 | 13.43 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.589124 | no |
| 3d_25C | 7d_25C | 0.064341 | no |
| 3d_25C | 7d_15C | 0.723907 | no |
| 3d_25C | 7d_30C | 0.296237 | no |
| 3d_25C | 10d_25C | 0.017485 | yes |
| 5d_25C | 7d_25C | 0.265084 | no |
| 5d_25C | 7d_15C | 0.881577 | no |
| 5d_25C | 7d_30C | 0.078956 | no |
| 5d_25C | 10d_25C | 0.101580 | no |
| 7d_25C | 7d_15C | 0.158509 | no |
| 7d_25C | 7d_30C | 0.006000 | yes |
| 7d_25C | 10d_25C | 0.746938 | no |
| 7d_15C | 7d_30C | 0.108148 | no |
| 7d_15C | 10d_25C | 0.055327 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8277.t1 MSLQTPLCSLLKIQHPVLLAGMARASGAPLAAAVSNAGGLGTIGGLGYTPAQLSEMLTELKSLLRDPSLPFGVDL ALPQVGGSARATNHDYTHGQLDELIEVTISHGAKLFVSAVGIPPAKTIKRLHEAGILIMNMVGAPKHAHKALKAG VDIVCAQGGEGGGHTGEVPFSVLVPAIVDVARQYKSPLTGQPALVVAAGGINDGRSLAASLMFGAAGVWVGTRFV ASEESGASRLHKEAVVGAQFGETKRTLVVTGRPLRMLPNDYIKEWEARPADIAALTSKGVVPMMDDLENDKDTDM PFLMGDVSASVNEIKPAGIIVKEMVQQAIEVLKVGGSYITSTGSSSKL* |
| Coding | >Pro_DTO377G3_2|g8277.t1 ATGTCTCTCCAAACACCACTATGCTCTCTCCTCAAGATTCAACACCCAGTGCTGCTAGCTGGCATGGCCCGCGCA TCTGGAGCTCCACTAGCAGCAGCGGTCTCTAATGCCGGCGGTCTGGGTACAATCGGCGGACTAGGCTACACACCA GCTCAACTATCAGAGATGCTCACGGAGCTCAAATCACTCCTCCGGGACCCCTCTCTCCCCTTCGGCGTAGATCTC GCCCTTCCGCAGGTCGGAGGTTCAGCGCGTGCAACAAACCACGACTACACACACGGCCAGCTGGACGAGCTAATC GAGGTGACCATCTCGCACGGCGCCAAGCTCTTCGTCTCTGCCGTCGGCATCCCGCCCGCAAAGACCATCAAGCGG CTCCACGAGGCCGGAATCCTGATTATGAATATGGTTGGCGCACCGAAGCACGCCCATAAGGCGTTAAAGGCGGGG GTCGATATTGTATGTGCACAGGGCGGCGAGGGGGGCGGTCATACCGGCGAAGTGCCGTTCTCCGTTCTCGTACCT GCTATTGTGGATGTTGCTCGGCAGTATAAGAGTCCGCTCACTGGGCAACCGGCACTTGTCGTTGCAGCCGGTGGT ATCAACGATGGCCGCAGTCTGGCGGCGTCGTTGATGTTTGGTGCTGCGGGTGTTTGGGTGGGCACGCGGTTTGTG GCCTCCGAGGAGAGCGGCGCTAGTCGCTTGCATAAGGAGGCTGTTGTTGGGGCGCAATTTGGCGAGACTAAGCGC ACGCTGGTTGTCACTGGTCGGCCTTTGCGCATGCTTCCTAATGATTATATTAAGGAATGGGAAGCGCGGCCTGCT GATATTGCCGCGCTGACTTCCAAGGGTGTTGTGCCCATGATGGATGATTTGGAGAACGACAAGGACACCGATATG CCGTTTCTCATGGGCGACGTCTCGGCTAGTGTTAACGAGATTAAACCAGCCGGAATCATTGTGAAGGAAATGGTT CAGCAGGCCATCGAGGTGCTCAAAGTCGGAGGCTCATATATCACTTCCACAGGGTCATCGAGTAAGCTATAG |
| Transcript | >Pro_DTO377G3_2|g8277.t1 ATGTCTCTCCAAACACCACTATGCTCTCTCCTCAAGATTCAACACCCAGTGCTGCTAGCTGGCATGGCCCGCGCA TCTGGAGCTCCACTAGCAGCAGCGGTCTCTAATGCCGGCGGTCTGGGTACAATCGGCGGACTAGGCTACACACCA GCTCAACTATCAGAGATGCTCACGGAGCTCAAATCACTCCTCCGGGACCCCTCTCTCCCCTTCGGCGTAGATCTC GCCCTTCCGCAGGTCGGAGGTTCAGCGCGTGCAACAAACCACGACTACACACACGGCCAGCTGGACGAGCTAATC GAGGTGACCATCTCGCACGGCGCCAAGCTCTTCGTCTCTGCCGTCGGCATCCCGCCCGCAAAGACCATCAAGCGG CTCCACGAGGCCGGAATCCTGATTATGAATATGGTTGGCGCACCGAAGCACGCCCATAAGGCGTTAAAGGCGGGG GTCGATATTGTATGTGCACAGGGCGGCGAGGGGGGCGGTCATACCGGCGAAGTGCCGTTCTCCGTTCTCGTACCT GCTATTGTGGATGTTGCTCGGCAGTATAAGAGTCCGCTCACTGGGCAACCGGCACTTGTCGTTGCAGCCGGTGGT ATCAACGATGGCCGCAGTCTGGCGGCGTCGTTGATGTTTGGTGCTGCGGGTGTTTGGGTGGGCACGCGGTTTGTG GCCTCCGAGGAGAGCGGCGCTAGTCGCTTGCATAAGGAGGCTGTTGTTGGGGCGCAATTTGGCGAGACTAAGCGC ACGCTGGTTGTCACTGGTCGGCCTTTGCGCATGCTTCCTAATGATTATATTAAGGAATGGGAAGCGCGGCCTGCT GATATTGCCGCGCTGACTTCCAAGGGTGTTGTGCCCATGATGGATGATTTGGAGAACGACAAGGACACCGATATG CCGTTTCTCATGGGCGACGTCTCGGCTAGTGTTAACGAGATTAAACCAGCCGGAATCATTGTGAAGGAAATGGTT CAGCAGGCCATCGAGGTGCTCAAAGTCGGAGGCTCATATATCACTTCCACAGGGTCATCGAGTAAGCTATAG |
| Gene | >Pro_DTO377G3_2|g8277.t1 ATGTCTCTCCAAACACCACTATGCTCTCTCCTCAAGATTCAACACCCAGTGCTGCTAGCTGGCATGGCCCGCGCA TCTGGAGCTCCACTAGCAGCAGCGGTCTCTAATGCCGGCGGTCTGGGTACAATCGGCGGACTAGGCTACACACCA GCTCAACTATCAGAGATGCTCACGGAGCTCAAATCACTCCTCCGGGACCCCTCTCTCCCCTTCGGCGTAGATCTC GCCCTTCCGCAGGTCGGAGGTTCAGCGCGTGCAACAAACCACGACTACACACACGGCCAGCTGGACGAGCTAATC GAGGTGACCATCTCGCACGGCGCCAAGCTCTTCGTCTCTGCCGTCGGCATCCCGCCCGCAAAGACCATCAAGCGG CTCCACGAGGCCGGAATCCTGATTATGAATATGGTTGGCGCACCGAAGCACGCCCATAAGGCGTTAAAGGCGGGG GTCGATATTGTATGTGCACAGGGCGGCGAGGGGGGCGGTCATACCGGCGAAGTGCCGTTCTCCGTTCTCGTACCT GCTATTGTGGATGTTGCTCGGCAGTATAAGAGTCCGCTCACTGGGCAACCGGCACTTGTCGTTGCAGCCGGTGGT ATCAACGATGGCCGCAGTCTGGCGGCGTCGTTGATGTTTGGTGCTGCGGGTGTTTGGGTGGGCACGCGGTTTGTG GCCTCCGAGGAGAGCGGCGCTAGTCGCTTGCATAAGGAGGCTGTTGTTGGGGCGCAATTTGGCGAGACTAAGCGC ACGCTGGTTGTCACTGGTCGGCCTTTGCGCATGCTTCCTAATGATTATATTAAGGAATGGGAAGCGCGGCCTGCT GATATTGCCGCGCTGACTTCCAAGGGTGTTGTGCCCATGATGGATGATTTGGAGAACGACAAGGACACCGATATG CCGTTTCTCATGGGCGACGTCTCGGCTAGTGTTAACGAGATTAAACCAGCCGGAATCATTGTGAAGGAAATGGTT CAGCAGGCCATCGAGGTGCTCAAAGTCGGAGGCTCATATATCACTTCCACAGGGTCATCGAGTAAGCTATAG |