© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8271.t1 |
| Gene name | |
| Location | scaffold_31:62081..63217 |
| Strand | - |
| Gene length (bp) | 1136 |
| Transcript length (bp) | 1074 |
| Coding sequence length (bp) | 1074 |
| Protein length (aa) | 358 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10294 | Methyltransf_16 | Lysine methyltransferase | 1.9E-49 | 140 | 326 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 11.51 | 4.53 | 18.49 |
| 5d_25C | Five days - 25 degrees Celsius | 11.04 | 4.37 | 17.72 |
| 7d_25C | Seven days - 25 degrees Celsius | 9.46 | 3.48 | 15.44 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.70 | 3.16 | 14.24 |
| 7d_15C | Seven days - 15 degrees Celsius | 26.46 | 13.25 | 39.68 |
| 7d_30C | Seven days - 30 degrees Celsius | 8.08 | 2.83 | 13.32 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.937463 | no |
| 3d_25C | 7d_25C | 0.656034 | no |
| 3d_25C | 7d_15C | 0.005626 | yes |
| 3d_25C | 7d_30C | 0.357951 | no |
| 3d_25C | 10d_25C | 0.494687 | no |
| 5d_25C | 7d_25C | 0.740991 | no |
| 5d_25C | 7d_15C | 0.001278 | yes |
| 5d_25C | 7d_30C | 0.427070 | no |
| 5d_25C | 10d_25C | 0.572535 | no |
| 7d_25C | 7d_15C | 0.001278 | yes |
| 7d_25C | 7d_30C | 0.737755 | no |
| 7d_25C | 10d_25C | 0.873722 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.889315 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8271.t1 MVYYVRFLKTPRIQQQKGAIYISALICITTDLGDSFLAEDVDLMVIAENSSRVIFQKTTKWNASNRELAITLGPL PSNLAQQSMVLTVKMPDSPEYVIPQYSPIQLVVAATSAPFGPHSTPAEKLVQRRLQYSGCEPFPMEIWEETGNSI ARHIWDAGLATVTYLHLMCEDIRKTARNKNKGPEPKIQALKQVLSVCNRPIQVVELGAGCGIAGIALASMLPNCS VLLTDLPEVEEIITRNMNVAQLATMSSLHYQNLDWDDPPDELCPRPIDLILVSDCTYNSDSLPALVSTLDRLVRT SPEAIVLVALKRRHDSETVFFDLMRSARFTAVQDSVEIPSQHDEVDEIEFYCYSRLI* |
| Coding | >Pro_DTO377G3_2|g8271.t1 ATGGTCTACTATGTTAGATTCCTGAAAACCCCCAGAATCCAACAACAGAAAGGGGCCATCTACATCTCCGCTCTT ATCTGCATCACCACTGATCTAGGGGACTCTTTTCTTGCTGAAGATGTTGATTTGATGGTGATAGCTGAGAATTCC TCTCGAGTTATATTTCAGAAAACGACAAAATGGAATGCCAGTAATCGAGAACTTGCTATTACCCTGGGTCCTCTC CCATCCAATCTGGCCCAGCAGTCTATGGTGTTGACGGTTAAAATGCCGGACTCACCAGAATATGTCATACCCCAG TATTCCCCCATACAATTAGTGGTTGCTGCAACAAGTGCTCCATTTGGGCCTCATTCCACACCAGCAGAGAAGCTG GTTCAACGCCGCCTTCAATACAGCGGCTGTGAACCATTCCCCATGGAAATATGGGAAGAGACAGGAAATAGCATT GCTCGACACATATGGGATGCGGGCCTAGCAACAGTTACATACCTTCACCTGATGTGTGAGGATATAAGGAAGACG GCCCGTAACAAGAACAAAGGCCCTGAACCTAAAATACAAGCTTTGAAGCAGGTCCTATCCGTCTGCAACCGACCT ATCCAGGTAGTTGAGCTTGGGGCAGGATGTGGGATAGCGGGAATTGCATTGGCATCAATGCTCCCGAATTGTTCG GTATTACTCACAGATCTCCCTGAGGTTGAGGAGATAATAACACGCAATATGAATGTTGCCCAACTCGCAACCATG TCCAGTCTTCACTATCAAAATCTCGACTGGGACGACCCACCGGATGAGCTCTGCCCACGGCCTATTGACCTCATT CTTGTCTCTGATTGTACCTACAATTCAGATAGCTTGCCCGCGCTAGTCTCTACGCTTGACCGATTGGTTCGGACC TCCCCAGAGGCAATCGTCTTGGTGGCTCTGAAGAGACGACATGACAGCGAAACGGTGTTTTTCGACTTGATGCGC TCGGCGAGATTTACGGCGGTGCAGGACAGCGTTGAAATCCCTTCGCAGCACGATGAGGTGGATGAAATTGAGTTT TACTGCTACAGTCGATTAATTTAG |
| Transcript | >Pro_DTO377G3_2|g8271.t1 ATGGTCTACTATGTTAGATTCCTGAAAACCCCCAGAATCCAACAACAGAAAGGGGCCATCTACATCTCCGCTCTT ATCTGCATCACCACTGATCTAGGGGACTCTTTTCTTGCTGAAGATGTTGATTTGATGGTGATAGCTGAGAATTCC TCTCGAGTTATATTTCAGAAAACGACAAAATGGAATGCCAGTAATCGAGAACTTGCTATTACCCTGGGTCCTCTC CCATCCAATCTGGCCCAGCAGTCTATGGTGTTGACGGTTAAAATGCCGGACTCACCAGAATATGTCATACCCCAG TATTCCCCCATACAATTAGTGGTTGCTGCAACAAGTGCTCCATTTGGGCCTCATTCCACACCAGCAGAGAAGCTG GTTCAACGCCGCCTTCAATACAGCGGCTGTGAACCATTCCCCATGGAAATATGGGAAGAGACAGGAAATAGCATT GCTCGACACATATGGGATGCGGGCCTAGCAACAGTTACATACCTTCACCTGATGTGTGAGGATATAAGGAAGACG GCCCGTAACAAGAACAAAGGCCCTGAACCTAAAATACAAGCTTTGAAGCAGGTCCTATCCGTCTGCAACCGACCT ATCCAGGTAGTTGAGCTTGGGGCAGGATGTGGGATAGCGGGAATTGCATTGGCATCAATGCTCCCGAATTGTTCG GTATTACTCACAGATCTCCCTGAGGTTGAGGAGATAATAACACGCAATATGAATGTTGCCCAACTCGCAACCATG TCCAGTCTTCACTATCAAAATCTCGACTGGGACGACCCACCGGATGAGCTCTGCCCACGGCCTATTGACCTCATT CTTGTCTCTGATTGTACCTACAATTCAGATAGCTTGCCCGCGCTAGTCTCTACGCTTGACCGATTGGTTCGGACC TCCCCAGAGGCAATCGTCTTGGTGGCTCTGAAGAGACGACATGACAGCGAAACGGTGTTTTTCGACTTGATGCGC TCGGCGAGATTTACGGCGGTGCAGGACAGCGTTGAAATCCCTTCGCAGCACGATGAGGTGGATGAAATTGAGTTT TACTGCTACAGTCGATTAATTTAG |
| Gene | >Pro_DTO377G3_2|g8271.t1 ATGGTCTACTATGTTAGATTCCTGAAAACCCCCAGAATCCAACAACAGAAAGGGGCCATCTACATCTCCGCTCTT ATCTGCATCACCACTGATCTAGGGGACTCTTTTCTTGCTGAAGATGTTGATTTGATGGTGATAGCTGAGAATTCC TCTCGAGTTATATTTCAGAAAACGACAAAATGGAATGCCAGTAATCGAGAACTTGCTATTACCCTGGGTCCTCTC CCATCCAATCTGGCCCAGCAGTCTATGGTGTTGACGGTTAAAATGCCGGACTCACCAGAATATGTCATACCCCAG TATTCCCCCATACAATTAGTGGTTGCTGCAACAAGTGCTCCATTTGGGCCTCATTCCACACCAGCAGAGAAGCTG GTTCAACGCCGCCTTCAATACAGCGGCTGTGAACCATTCCCCATGGAAATATGGGAAGAGACAGGAAATAGCATT GCTCGACACATATGGTAAGTCACTCTGCTACTTCCCTTTGGCTTTTTCCCTCGAGATTCTAAATACAAATTCCTA GGGATGCGGGCCTAGCAACAGTTACATACCTTCACCTGATGTGTGAGGATATAAGGAAGACGGCCCGTAACAAGA ACAAAGGCCCTGAACCTAAAATACAAGCTTTGAAGCAGGTCCTATCCGTCTGCAACCGACCTATCCAGGTAGTTG AGCTTGGGGCAGGATGTGGGATAGCGGGAATTGCATTGGCATCAATGCTCCCGAATTGTTCGGTATTACTCACAG ATCTCCCTGAGGTTGAGGAGATAATAACACGCAATATGAATGTTGCCCAACTCGCAACCATGTCCAGTCTTCACT ATCAAAATCTCGACTGGGACGACCCACCGGATGAGCTCTGCCCACGGCCTATTGACCTCATTCTTGTCTCTGATT GTACCTACAATTCAGATAGCTTGCCCGCGCTAGTCTCTACGCTTGACCGATTGGTTCGGACCTCCCCAGAGGCAA TCGTCTTGGTGGCTCTGAAGAGACGACATGACAGCGAAACGGTGTTTTTCGACTTGATGCGCTCGGCGAGATTTA CGGCGGTGCAGGACAGCGTTGAAATCCCTTCGCAGCACGATGAGGTGGATGAAATTGAGTTTTACTGCTACAGTC GATTAATTTAG |