Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8265.t1
Gene name
Locationscaffold_31:15496..15773
Strand-
Gene length (bp)277
Transcript length (bp)225
Coding sequence length (bp)225
Protein length (aa) 75

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 40 0.45

Transmembrane Domains

Domain # Start End Length
1 23 45 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 3.80 0.00 10.26
5d_25C Five days - 25 degrees Celsius 3.49 0.48 6.50
7d_25C Seven days - 25 degrees Celsius 0.60 0.00 1.46
10d_25C Ten days - 25 degrees Celsius 3.70 0.68 6.71
7d_15C Seven days - 15 degrees Celsius 5.85 0.00 14.89
7d_30C Seven days - 30 degrees Celsius 9.62 0.00 22.97

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.960026 no
3d_25C 7d_25C 0.394838 no
3d_25C 7d_15C 0.737168 no
3d_25C 7d_30C 0.383726 no
3d_25C 10d_25C 0.962234 no
5d_25C 7d_25C 0.420303 no
5d_25C 7d_15C 0.683643 no
5d_25C 7d_30C 0.361815 no
5d_25C 10d_25C 0.960957 no
7d_25C 7d_15C 0.369236 no
7d_25C 7d_30C 0.366126 no
7d_25C 10d_25C 0.411607 no
7d_15C 7d_30C 0.653313 no
7d_15C 10d_25C 0.733326 no
7d_30C 10d_25C 0.395422 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8265.t1
MDASNVTFDPPNMYSNNPQEKTRIINLVISQAPAGAASAIVVNGWHTSRSDKRRHCTVDYYNAAGGWISREHII*
Coding >Pro_DTO377G3_2|g8265.t1
ATGGATGCCAGCAATGTTACTTTCGACCCGCCTAACATGTACTCGAACAATCCCCAGGAGAAGACGAGGATTATC
AACTTGGTCATTAGCCAAGCACCTGCCGGGGCTGCGAGTGCTATAGTCGTGAACGGCTGGCACACCAGCAGAAGC
GACAAACGGCGGCACTGTACCGTCGATTACTACAACGCCGCTGGTGGCTGGATCAGCCGAGAGCACATTATCTGA
Transcript >Pro_DTO377G3_2|g8265.t1
ATGGATGCCAGCAATGTTACTTTCGACCCGCCTAACATGTACTCGAACAATCCCCAGGAGAAGACGAGGATTATC
AACTTGGTCATTAGCCAAGCACCTGCCGGGGCTGCGAGTGCTATAGTCGTGAACGGCTGGCACACCAGCAGAAGC
GACAAACGGCGGCACTGTACCGTCGATTACTACAACGCCGCTGGTGGCTGGATCAGCCGAGAGCACATTATCTGA
Gene >Pro_DTO377G3_2|g8265.t1
ATGGATGCCAGCAATGTTACTTTCGACCCGCCTAACATGTACTCGAACAATCCCCAGGAGAAGACGAGGATTATC
AACTTGGTCATTAGCCAAGCACCTGCCGGGGCTGCGAGTGCTATAGTCGTGTAAGTTAGTCGCATCCCTCATTAC
AACCAAGCCGCTGACGAGAGATTTTAGGAACGGCTGGCACACCAGCAGAAGCGACAAACGGCGGCACTGTACCGT
CGATTACTACAACGCCGCTGGTGGCTGGATCAGCCGAGAGCACATTATCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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