© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8253.t1 |
| Gene name | |
| Location | scaffold_30:243246..244372 |
| Strand | + |
| Gene length (bp) | 1126 |
| Transcript length (bp) | 1020 |
| Coding sequence length (bp) | 1020 |
| Protein length (aa) | 340 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05652 | DcpS | Scavenger mRNA decapping enzyme (DcpS) N-terminal | 3.9E-34 | 15 | 127 |
| PF11969 | DcpS_C | Scavenger mRNA decapping enzyme C-term binding | 8.1E-29 | 157 | 275 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0000290 | deadenylation-dependent decapping of nuclear-transcribed mRNA | Yes |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0034655 | nucleobase-containing compound catabolic process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901361 | organic cyclic compound catabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0044270 | cellular nitrogen compound catabolic process | No |
| GO:0110154 | RNA decapping | No |
| GO:0009892 | negative regulation of metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0000956 | nuclear-transcribed mRNA catabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0006402 | mRNA catabolic process | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006401 | RNA catabolic process | No |
| GO:0010605 | negative regulation of macromolecule metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0110156 | methylguanosine-cap decapping | No |
| GO:0048519 | negative regulation of biological process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0046700 | heterocycle catabolic process | No |
| GO:0019439 | aromatic compound catabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0010629 | negative regulation of gene expression | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8253.t1 MADSAGTGKLAPEALITKFQVSKLLKQDQNGRRIALLGTIDNTQGILIAERAAFETESLAVLQAFHAAISRVNNL GDNDIYRWYLASSNANNTAPTTPAEAANPQQDLKLNLIWPCTAQHIKKYSDQHLRMVTETAEIYRAHVRPFMQAK REEGRLNWVFNILEGRTEQEDVVLRDEGLGPDDGFLMLPDLNWDRKSIGSLHLLALVQRRDIWSLRDLKKSFVPW LKYLRGRVLEATVSMYPGLEEEQIKLYVHYQPTYYHFHIHVVNVMLEAGATQATGKAFGLENLISQLETLSGDGD ASLADVDLTYFLGEANELWTDIFEPLKQGKQPREYKRAA* |
| Coding | >Pro_DTO377G3_2|g8253.t1 ATGGCCGACTCTGCAGGCACCGGCAAGCTCGCCCCAGAGGCACTAATCACCAAATTTCAAGTGAGCAAGCTCCTC AAACAAGACCAAAATGGCCGACGAATCGCCCTCCTAGGCACAATCGACAACACGCAAGGCATCCTAATAGCCGAG CGCGCGGCATTCGAAACGGAATCCCTCGCCGTGCTACAAGCCTTCCACGCCGCAATCTCGCGAGTCAACAACCTA GGCGACAACGACATCTACCGCTGGTATCTCGCGTCATCAAACGCCAACAACACGGCCCCGACCACTCCCGCGGAA GCCGCGAACCCCCAGCAAGACCTCAAACTCAACCTCATCTGGCCATGCACCGCACAGCACATCAAGAAGTACTCG GACCAGCATCTGCGCATGGTCACGGAGACGGCGGAGATATACCGTGCGCACGTGCGACCGTTCATGCAGGCGAAG CGCGAGGAGGGGCGGCTGAACTGGGTGTTTAATATTCTTGAGGGCAGGACTGAGCAGGAGGATGTGGTTCTGCGG GATGAGGGGCTCGGGCCTGATGATGGGTTTCTGATGTTACCGGATTTGAACTGGGATCGGAAGAGTATCGGGTCA TTGCATTTGTTGGCTTTGGTGCAGAGGAGGGATATTTGGAGTTTGAGGGATCTGAAGAAGAGTTTTGTGCCTTGG TTGAAATATTTGAGGGGGAGGGTGCTGGAGGCTACGGTTTCTATGTATCCTGGTTTGGAGGAGGAGCAGATTAAG CTTTACGTTCATTATCAACCGACTTACTACCATTTCCATATTCATGTTGTCAATGTTATGCTCGAAGCTGGTGCA ACGCAGGCAACGGGCAAGGCGTTTGGGCTGGAGAACTTGATCTCGCAGCTTGAGACTTTGTCTGGGGATGGGGAT GCTAGTCTGGCCGATGTTGATTTGACATACTTCCTGGGCGAGGCCAATGAGCTGTGGACGGATATTTTTGAGCCG TTGAAGCAGGGGAAGCAACCTCGTGAATATAAGAGAGCTGCTTGA |
| Transcript | >Pro_DTO377G3_2|g8253.t1 ATGGCCGACTCTGCAGGCACCGGCAAGCTCGCCCCAGAGGCACTAATCACCAAATTTCAAGTGAGCAAGCTCCTC AAACAAGACCAAAATGGCCGACGAATCGCCCTCCTAGGCACAATCGACAACACGCAAGGCATCCTAATAGCCGAG CGCGCGGCATTCGAAACGGAATCCCTCGCCGTGCTACAAGCCTTCCACGCCGCAATCTCGCGAGTCAACAACCTA GGCGACAACGACATCTACCGCTGGTATCTCGCGTCATCAAACGCCAACAACACGGCCCCGACCACTCCCGCGGAA GCCGCGAACCCCCAGCAAGACCTCAAACTCAACCTCATCTGGCCATGCACCGCACAGCACATCAAGAAGTACTCG GACCAGCATCTGCGCATGGTCACGGAGACGGCGGAGATATACCGTGCGCACGTGCGACCGTTCATGCAGGCGAAG CGCGAGGAGGGGCGGCTGAACTGGGTGTTTAATATTCTTGAGGGCAGGACTGAGCAGGAGGATGTGGTTCTGCGG GATGAGGGGCTCGGGCCTGATGATGGGTTTCTGATGTTACCGGATTTGAACTGGGATCGGAAGAGTATCGGGTCA TTGCATTTGTTGGCTTTGGTGCAGAGGAGGGATATTTGGAGTTTGAGGGATCTGAAGAAGAGTTTTGTGCCTTGG TTGAAATATTTGAGGGGGAGGGTGCTGGAGGCTACGGTTTCTATGTATCCTGGTTTGGAGGAGGAGCAGATTAAG CTTTACGTTCATTATCAACCGACTTACTACCATTTCCATATTCATGTTGTCAATGTTATGCTCGAAGCTGGTGCA ACGCAGGCAACGGGCAAGGCGTTTGGGCTGGAGAACTTGATCTCGCAGCTTGAGACTTTGTCTGGGGATGGGGAT GCTAGTCTGGCCGATGTTGATTTGACATACTTCCTGGGCGAGGCCAATGAGCTGTGGACGGATATTTTTGAGCCG TTGAAGCAGGGGAAGCAACCTCGTGAATATAAGAGAGCTGCTTGA |
| Gene | >Pro_DTO377G3_2|g8253.t1 ATGGCCGACTCTGCAGGCACCGGCAAGCTCGCCCCAGAGGCACTAATCACCAAATTTCAAGTGAGCAAGCTCCTC AAACAAGGTCCGACCCATCCACCTCCTACCCCGCAGCCTCAATGAACTAAAAGAAACCCAGACCAAAATGGCCGA CGAATCGCCCTCCTAGGCACAATCGACAACACGCAAGGCATCCTAATAGCCGAGCGCGCGGCATTCGAAACGGAA TCCCTCGCCGTGCTACAAGCCTTCCACGCCGCAATCTCGCGAGTCAACAACCTAGGCGACAACGACATCTACCGC TGGTATCTCGCGTCATCAAACGCCAACAACACGGCCCCGACCACTCCCGCGGAAGCCGCGAACCCCCAGCAAGAC CTCAAACTCAACCTCATCTGGCCATGCACCGCACAGCACATCAAGAAGTACTCGGACCAGCATCTGCGCATGGTC ACGGAGACGGCGGAGATATACCGTGCGCACGTGCGACCGTTCATGCAGGCGAAGCGCGAGGAGGGGCGGCTGAAC TGGGTGTTTAATATTCTTGAGGGCAGGACTGAGCAGGAGGATGTGGTTCTGCGGGATGAGGGGCTCGGGCCTGAT GATGGGTTTCTGATGTTACCGGATTTGAACTGGGATCGGAAGAGTATCGGGTCATTGCATTTGTTGGCTTTGGTG CAGAGGAGGGATATTTGGAGTTTGAGGGATCTGAAGAAGAGTTTTGTGCCTTGGTTGAAATATTTGAGGGGGAGG GTGCTGGAGGCTACGGTTTCTATGTATCCTGGTTTGGAGGAGGAGCAGATTAAGCTTTACGTTCATTGTGAGTTG CATTTCGTTACGTTGGTGGTTTTTTTGCTGACTTTGAATTTTAGATCAACCGACTTACTACCATTTCCATATTCA TGTTGTCAATGTTATGCTCGAAGCTGGTGCAACGCAGGCAACGGGCAAGGCGTTTGGGCTGGAGAACTTGATCTC GCAGCTTGAGACTTTGTCTGGGGATGGGGATGCTAGTCTGGCCGATGTTGATTTGACATACTTCCTGGGCGAGGC CAATGAGCTGTGGACGGATATTTTTGAGCCGTTGAAGCAGGGGAAGCAACCTCGTGAATATAAGAGAGCTGCTTG A |