© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8252.t1 |
| Gene name | |
| Location | scaffold_30:242216..242961 |
| Strand | + |
| Gene length (bp) | 745 |
| Transcript length (bp) | 501 |
| Coding sequence length (bp) | 501 |
| Protein length (aa) | 167 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08615 | RNase_H2_suC | Ribonuclease H2 non-catalytic subunit (Ylr154p-like) | 3.3E-29 | 25 | 150 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006401 | RNA catabolic process | Yes |
| GO:0032299 | ribonuclease H2 complex | Yes |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0034655 | nucleobase-containing compound catabolic process | No |
| GO:1901361 | organic cyclic compound catabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0044464 | cell part | No |
| GO:0019439 | aromatic compound catabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044270 | cellular nitrogen compound catabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0008152 | metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0008150 | biological_process | No |
| GO:0046700 | heterocycle catabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044424 | intracellular part | No |
| GO:0016070 | RNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8252.t1 MYAIQPCAKASSQSEKNDSALQCVPNIIPCRIHHDGPVDSLDRYWTVQDEKDNTQTTYFRGRKLRGRRVALPDGY QGVVATHTDRVLPAAQPADNDGAEDAEAEPEEPVKIMEIQRTFDEFVVWGHEAIPAADDTFVKGVEEWLQFADAM HTTLTSGKTGKESATA* |
| Coding | >Pro_DTO377G3_2|g8252.t1 ATGTACGCCATCCAGCCTTGCGCAAAAGCGAGCTCACAATCCGAGAAGAATGACTCGGCTCTGCAATGTGTGCCA AATATCATTCCATGCCGGATTCACCACGATGGGCCAGTTGATTCACTGGATCGGTATTGGACAGTGCAAGACGAA AAAGATAATACACAAACGACATATTTCCGCGGACGCAAACTTCGAGGTCGGCGCGTCGCCCTTCCTGATGGCTAT CAAGGTGTAGTCGCAACACACACAGACCGTGTGTTACCTGCAGCTCAACCGGCAGACAATGACGGCGCTGAGGAT GCAGAGGCTGAACCCGAGGAACCAGTGAAGATTATGGAGATTCAGAGGACCTTTGATGAGTTTGTAGTATGGGGA CATGAGGCTATTCCTGCGGCAGATGACACTTTTGTCAAGGGAGTGGAGGAGTGGCTGCAGTTTGCGGACGCGATG CATACAACCCTAACATCAGGGAAGACTGGAAAGGAGTCTGCTACTGCCTGA |
| Transcript | >Pro_DTO377G3_2|g8252.t1 ATGTACGCCATCCAGCCTTGCGCAAAAGCGAGCTCACAATCCGAGAAGAATGACTCGGCTCTGCAATGTGTGCCA AATATCATTCCATGCCGGATTCACCACGATGGGCCAGTTGATTCACTGGATCGGTATTGGACAGTGCAAGACGAA AAAGATAATACACAAACGACATATTTCCGCGGACGCAAACTTCGAGGTCGGCGCGTCGCCCTTCCTGATGGCTAT CAAGGTGTAGTCGCAACACACACAGACCGTGTGTTACCTGCAGCTCAACCGGCAGACAATGACGGCGCTGAGGAT GCAGAGGCTGAACCCGAGGAACCAGTGAAGATTATGGAGATTCAGAGGACCTTTGATGAGTTTGTAGTATGGGGA CATGAGGCTATTCCTGCGGCAGATGACACTTTTGTCAAGGGAGTGGAGGAGTGGCTGCAGTTTGCGGACGCGATG CATACAACCCTAACATCAGGGAAGACTGGAAAGGAGTCTGCTACTGCCTGA |
| Gene | >Pro_DTO377G3_2|g8252.t1 ATGTACGCCATCCAGCCTTGCGCAAAAGCGAGCTCACAATCCGAGAAGAATGACTCGGCTCTGCAATGTGTGCCA AATATCATTCCATGCCGGATTCACCACGATGGGCCAGTTGATTCACTGGATCGGTATTGGACAGTGCAAGACGAA AAAGGCATGCAAGACAGACAGCCCTAGATGGAGAAAATCCAGCTAGACTAATGTACAAACCAGAACTAACATTTC TTCATATCCAGATAATACACAAACGACATATTTCCGCGGACGCAAACTTCGAGGTCGGCGCGTCGCCCTTCCTGA TGGCTATCAAGGTATGAGAGAACATCCAAATGAGGGTTCCGGATATACAAAAACGGTAATTGAATCATAATTGGC TGATTATACCATTGAAAATATATAGGTGTAGTCGCAACACACACAGACCGTGTGTTACCTGCAGCTCAACCGGCA GACAATGACGGCGCTGAGGATGCAGAGGCTGAACCCGAGGAACCAGTGAAGATTATGGAGATTCAGAGGACCTTT GATGAGTTTGTAGTATGGGGACATGAGGCTATTCCTGCGGCAGATGACACTTTTGTCAAGGGAGTGGAGGAGTGG CTGCAGTTTGCGGACGCGGTATGTTTTATTCCCATCTATTATGATCTATTCGGGTTATTCTTTTGCCCTGGTTCT TTTCTGATTGTCTTAGATGCATACAACCCTAACATCAGGGAAGACTGGAAAGGAGTCTGCTACTGCCTGA |