© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8247.t1 |
| Gene name | |
| Location | scaffold_30:233207..234837 |
| Strand | + |
| Gene length (bp) | 1630 |
| Transcript length (bp) | 1509 |
| Coding sequence length (bp) | 1509 |
| Protein length (aa) | 503 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04597 | Ribophorin_I | Ribophorin I | 1.0E-147 | 40 | 492 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0006486 | protein glycosylation | Yes |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0043413 | macromolecule glycosylation | No |
| GO:0070085 | glycosylation | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0036211 | protein modification process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 476 | 493 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8247.t1 MRFFTATVLGLLAPSLCAATNLTTPSRLDLPSGFKPPQVFKNINLVRNTNLEKSYVRETINVVVENVDKQPQNDY YIPFPAEVFDRVGGFEVRDKKAPEKGRFDVDYTEAVPSDGNQYFVVHLPEPLAPKSQITLGISYSVLSSLSPLPA TIGQADKQFLTYSFSAYMPSAYTTVTQKTKLKFPSNNVPDYTPTEGLKSGSDPERKGTTYTYGPYDTAEVAPGTE HPITVRYEFTKPVITVNLLERDLEVSHWGGNLATEERYWLRNNGSELTNQFSRVQWTFTSYQKAPTSALRELTYP LLPGSVDPYFIDDIGNVSTSRYRPSVGKSAGNLELKPRYPIFGGWNYSFRIGWNNDLASFLRRAAGVDSDSYVLK VPLIEGPKMAEGIQYERVVVRVVLPEGAHNVRFELLEGTNSNGLPGAKHIYAHLNTLKTYMDTLGRTTLTLEVDS LTDEARDSKFVVTYDHSMVDALRKPLTIFAGLLTVFVAAWGIGKIDISIKKR* |
| Coding | >Pro_DTO377G3_2|g8247.t1 ATGAGGTTTTTCACCGCCACGGTGCTCGGGCTGCTCGCGCCCAGCCTGTGCGCTGCAACCAACCTTACCACGCCT AGTCGATTGGATCTTCCGTCCGGCTTCAAGCCCCCGCAGGTTTTCAAAAACATAAATTTGGTTCGCAATACCAAT CTGGAAAAGAGCTATGTGCGGGAAACGATCAATGTTGTTGTGGAGAATGTCGACAAGCAGCCCCAGAACGACTAC TACATCCCCTTCCCTGCCGAAGTGTTTGACCGTGTTGGAGGCTTCGAAGTGAGGGATAAGAAAGCCCCCGAGAAG GGACGCTTTGATGTGGACTATACCGAAGCTGTACCATCTGACGGCAACCAGTATTTCGTCGTTCACCTTCCCGAG CCTCTGGCCCCGAAGTCGCAGATTACCCTTGGAATCTCGTACTCAGTGCTTTCCTCTCTCAGCCCACTTCCTGCC ACCATTGGACAGGCGGACAAGCAATTCCTCACCTACTCCTTCTCCGCCTACATGCCATCCGCCTACACGACGGTT ACACAGAAAACCAAGTTGAAGTTCCCCAGCAACAATGTGCCGGATTATACACCCACGGAGGGTCTCAAGTCCGGC TCGGACCCCGAGCGCAAAGGCACCACATACACCTACGGCCCGTATGACACGGCCGAGGTGGCCCCGGGCACTGAG CACCCCATTACCGTTCGCTATGAGTTCACTAAGCCCGTCATCACGGTAAACCTTTTAGAGCGTGACTTGGAAGTC TCGCACTGGGGCGGCAATCTCGCAACCGAGGAACGGTACTGGCTGCGCAACAACGGCTCGGAGCTGACCAACCAG TTCTCGCGTGTCCAGTGGACCTTCACCTCCTACCAGAAAGCGCCTACTTCGGCGCTTCGTGAGCTAACATATCCG CTTCTGCCTGGCTCTGTCGATCCTTACTTCATTGACGATATCGGCAATGTCTCGACCAGCCGCTATCGTCCGAGT GTTGGTAAGAGCGCCGGTAATTTGGAGCTGAAGCCCCGCTACCCTATCTTCGGAGGCTGGAACTACAGCTTCCGT ATTGGGTGGAACAATGACCTTGCTTCGTTCCTGCGCCGTGCCGCGGGTGTCGACTCCGACTCCTATGTCCTCAAG GTCCCCCTCATTGAAGGACCTAAGATGGCTGAGGGCATCCAGTATGAGCGTGTGGTTGTGCGTGTTGTGCTCCCT GAGGGTGCTCACAATGTTCGCTTTGAGCTTCTTGAGGGGACCAACAGTAATGGTCTTCCTGGCGCCAAGCACATT TACGCTCACTTGAACACTCTCAAGACCTACATGGATACTCTGGGCCGGACCACCTTGACCCTGGAGGTTGACAGT CTGACTGACGAAGCGCGCGACTCCAAGTTCGTGGTTACGTACGATCACTCCATGGTCGATGCCCTGCGCAAGCCT CTCACCATCTTTGCGGGCTTGCTTACAGTCTTTGTCGCTGCCTGGGGCATTGGAAAGATCGATATCAGCATCAAG AAGCGATGA |
| Transcript | >Pro_DTO377G3_2|g8247.t1 ATGAGGTTTTTCACCGCCACGGTGCTCGGGCTGCTCGCGCCCAGCCTGTGCGCTGCAACCAACCTTACCACGCCT AGTCGATTGGATCTTCCGTCCGGCTTCAAGCCCCCGCAGGTTTTCAAAAACATAAATTTGGTTCGCAATACCAAT CTGGAAAAGAGCTATGTGCGGGAAACGATCAATGTTGTTGTGGAGAATGTCGACAAGCAGCCCCAGAACGACTAC TACATCCCCTTCCCTGCCGAAGTGTTTGACCGTGTTGGAGGCTTCGAAGTGAGGGATAAGAAAGCCCCCGAGAAG GGACGCTTTGATGTGGACTATACCGAAGCTGTACCATCTGACGGCAACCAGTATTTCGTCGTTCACCTTCCCGAG CCTCTGGCCCCGAAGTCGCAGATTACCCTTGGAATCTCGTACTCAGTGCTTTCCTCTCTCAGCCCACTTCCTGCC ACCATTGGACAGGCGGACAAGCAATTCCTCACCTACTCCTTCTCCGCCTACATGCCATCCGCCTACACGACGGTT ACACAGAAAACCAAGTTGAAGTTCCCCAGCAACAATGTGCCGGATTATACACCCACGGAGGGTCTCAAGTCCGGC TCGGACCCCGAGCGCAAAGGCACCACATACACCTACGGCCCGTATGACACGGCCGAGGTGGCCCCGGGCACTGAG CACCCCATTACCGTTCGCTATGAGTTCACTAAGCCCGTCATCACGGTAAACCTTTTAGAGCGTGACTTGGAAGTC TCGCACTGGGGCGGCAATCTCGCAACCGAGGAACGGTACTGGCTGCGCAACAACGGCTCGGAGCTGACCAACCAG TTCTCGCGTGTCCAGTGGACCTTCACCTCCTACCAGAAAGCGCCTACTTCGGCGCTTCGTGAGCTAACATATCCG CTTCTGCCTGGCTCTGTCGATCCTTACTTCATTGACGATATCGGCAATGTCTCGACCAGCCGCTATCGTCCGAGT GTTGGTAAGAGCGCCGGTAATTTGGAGCTGAAGCCCCGCTACCCTATCTTCGGAGGCTGGAACTACAGCTTCCGT ATTGGGTGGAACAATGACCTTGCTTCGTTCCTGCGCCGTGCCGCGGGTGTCGACTCCGACTCCTATGTCCTCAAG GTCCCCCTCATTGAAGGACCTAAGATGGCTGAGGGCATCCAGTATGAGCGTGTGGTTGTGCGTGTTGTGCTCCCT GAGGGTGCTCACAATGTTCGCTTTGAGCTTCTTGAGGGGACCAACAGTAATGGTCTTCCTGGCGCCAAGCACATT TACGCTCACTTGAACACTCTCAAGACCTACATGGATACTCTGGGCCGGACCACCTTGACCCTGGAGGTTGACAGT CTGACTGACGAAGCGCGCGACTCCAAGTTCGTGGTTACGTACGATCACTCCATGGTCGATGCCCTGCGCAAGCCT CTCACCATCTTTGCGGGCTTGCTTACAGTCTTTGTCGCTGCCTGGGGCATTGGAAAGATCGATATCAGCATCAAG AAGCGATGA |
| Gene | >Pro_DTO377G3_2|g8247.t1 ATGAGGTTTTTCACCGCCACGGTGCTCGGGCTGCTCGCGCCCAGCCTGTGCGCTGCAACCAACCTTACCACGCCT AGTCGATTGGATCTTCCGTCCGGCTTCAAGCCCCCGCAGGTTTTCAAAAACATAAATTTGGTTCGCAATACCAAT CTGGAAAAGAGCTATGTGCGGGAAACGATCAATGTTGTTGTGGAGAATGTCGACAAGCAGCCCCAGAACGACTAC TACATCCCCTTCCCTGCCGAAGTGTTTGACCGTGTTGGAGGCTTCGAAGTGAGGGATAAGAAAGCCCCCGAGAAG GGACGCTTTGATGTGGACTATACCGAAGCTGTACCATCTGAGTTAGTATCAATTGGGAGGTCAATGGCCATGTCA GGGGCCTATTAAACTAACAATTGAAACAGCGGCAACCAGTATTTCGTCGTTCACCTTCCCGAGCCTCTGGCCCCG AAGTCGCAGATTACCCTTGGAATCTCGTACTCAGTGCTTTCCTCTCTCAGCCCACTTCCTGCCACCATTGGACAG GCGGACAAGCAATTCCTCACCTACTCCTTCTCCGCCTACATGCCATCCGCCTACACGACGGTTACACAGAAAACC AAGTTGAAGTTCCCCAGCAACAATGTGCCGGATTATACACCCACGGAGGGTCTCAAGTCCGGCTCGGACCCCGAG CGCAAAGGCACCACATACACCTACGGCCCGTATGACACGGCCGAGGTGGCCCCGGGCACTGAGCACCCCATTACC GTTCGCTATGAGTTCACTAAGCCCGTCATCACGGTAAACCTTTTAGAGCGTGACTTGGAAGTCTCGCACTGGGGC GGCAATCTCGCAACCGAGGAACGGTACTGGCTGCGCAACAACGGCTCGGAGCTGACCAACCAGTTCTCGCGTGTC CAGTGGACCTTCACCTCCTACCAGAAAGCGCCTACTTCGGCGCTTCGTGAGCTAACATATCCGCTTCTGCCTGGC TCTGTCGATCCTTACTTCATTGACGATATCGGCAATGTCTCGACCAGCCGCTATCGTCCGAGTGTTGGTAAGAGC GCCGGTAATTTGGAGCTGAAGCCCCGCTACCCTATCTTCGGAGGCTGGAACTACAGCTTCCGTATTGGGTGGAAC AATGACCTTGCTTCGTTCCTGCGCCGTGCCGCGGGTGTCGACTCCGACTCCTATGTCCTCAAGGTCCCCCTCATT GAAGGACCTAAGATGGCTGAGGGCATCCAGTATGAGCGTGTGGTTGTGCGTGTTGTGCTCCCTGAGGGTGCTCAC AATGTTCGCTTTGAGCTTCTTGAGGGGACCAACAGTAATGGTCTTCCTGGCGCCAAGCACATTTACGCTCACTTG AACACTCTCAAGACCTACATGGATACTCTGGGCCGGACCACCTTGACCCTGGAGGTTGACAGTCTGACTGACGAA GCGCGCGACTCCAAGTTCGTGGTATGTACTAATCGTATTGTCACTTGTTCATCTCGCAATTATGCTAATTCGCCA TTAGGTTACGTACGATCACTCCATGGTCGATGCCCTGCGCAAGCCTCTCACCATCTTTGCGGGCTTGCTTACAGT CTTTGTCGCTGCCTGGGGCATTGGAAAGATCGATATCAGCATCAAGAAGCGATGA |