Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8230.t1
Gene name
Locationscaffold_30:182821..183544
Strand-
Gene length (bp)723
Transcript length (bp)342
Coding sequence length (bp)342
Protein length (aa) 114

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.3E-19 13 79
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-06 9 83

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 461.95 275.29 648.61
5d_25C Five days - 25 degrees Celsius 459.97 274.34 645.59
7d_25C Seven days - 25 degrees Celsius 454.32 270.05 638.58
10d_25C Ten days - 25 degrees Celsius 413.24 243.78 582.69
7d_15C Seven days - 15 degrees Celsius 529.60 318.12 741.08
7d_30C Seven days - 30 degrees Celsius 387.20 225.70 548.69

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.990703 no
3d_25C 7d_25C 0.964042 no
3d_25C 7d_15C 0.627518 no
3d_25C 7d_30C 0.517162 no
3d_25C 10d_25C 0.708584 no
5d_25C 7d_25C 0.973112 no
5d_25C 7d_15C 0.613468 no
5d_25C 7d_30C 0.526655 no
5d_25C 10d_25C 0.721193 no
7d_25C 7d_15C 0.573334 no
7d_25C 7d_30C 0.565553 no
7d_25C 10d_25C 0.757063 no
7d_15C 7d_30C 0.185061 no
7d_15C 10d_25C 0.310478 no
7d_30C 10d_25C 0.845574 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8230.t1
MSRKLAPEANRILFVKNLNYNVTAEQLFDLFGKFGPIRQIRQGIANNSKGTAFVVYEDVHDAKQACDKLNGFNFQ
NRYLVVLYHQPEKMVRTKEDITERQENLERLKQQHGIE*
Coding >Pro_DTO377G3_2|g8230.t1
ATGAGCCGAAAGCTCGCCCCCGAAGCCAATCGGATTCTCTTCGTCAAGAACCTCAACTACAACGTAACGGCAGAG
CAACTTTTCGACCTGTTTGGCAAATTTGGTCCCATTCGTCAAATTCGCCAGGGTATCGCCAATAACTCCAAGGGA
ACCGCATTTGTTGTCTACGAAGACGTCCATGACGCAAAGCAGGCATGCGATAAACTAAATGGCTTCAATTTCCAA
AACAGATATTTGGTCGTCCTCTATCACCAGCCAGAGAAGATGGTGCGGACGAAAGAGGATATTACGGAAAGACAA
GAGAACTTAGAGAGGCTGAAACAACAACATGGGATAGAATGA
Transcript >Pro_DTO377G3_2|g8230.t1
ATGAGCCGAAAGCTCGCCCCCGAAGCCAATCGGATTCTCTTCGTCAAGAACCTCAACTACAACGTAACGGCAGAG
CAACTTTTCGACCTGTTTGGCAAATTTGGTCCCATTCGTCAAATTCGCCAGGGTATCGCCAATAACTCCAAGGGA
ACCGCATTTGTTGTCTACGAAGACGTCCATGACGCAAAGCAGGCATGCGATAAACTAAATGGCTTCAATTTCCAA
AACAGATATTTGGTCGTCCTCTATCACCAGCCAGAGAAGATGGTGCGGACGAAAGAGGATATTACGGAAAGACAA
GAGAACTTAGAGAGGCTGAAACAACAACATGGGATAGAATGA
Gene >Pro_DTO377G3_2|g8230.t1
ATGAGCCGAAAGCTCGCCCCCGAAGCCAATCGGTACGTGAGAATTACTTTTTCCATGCCCCTCCCGGATTCTCAG
CACAAGTGCCATTTCGCCATCAACAGCTTGATCGTTGGGTCGAGCAGATCCCTGACATTTGGAAGTGACTCGCGC
TAACCTCTTTTTTCTCTTTTTTACAGGATTCTCTTCGTCAAGAACCTCAAGTATGTACCTGATCATTCCGCTGCT
TGGCTCCGGCTCGATTCTCCGGCAGATCAGCCGTGCAGCTCCCCATTTACAATCGCGATCAGATCGCTGACATCT
TTCTCAAAAGCTACAACGTAACGGCAGAGCAACTTTTCGACCTGTTTGGCAAATTTGGTCCCATTCGGTAATGTC
ACCCATGGTCGCGTGCGTTTGAACCCGATCTAATACCATTTCATCTACAGTCAAATTCGCCAGGGTATCGCCAAT
AACTCCAAGGGAACCGCATTTGTTGTCTACGAAGACGTCCATGACGCAAAGCAGGCATGCGATAAACTAAATGGC
TTCAATTTCCAAAACAGATATTTGGTCGGTACGTGTTGCATATGGATCTAATGAGCGTCCAGAATTATTGGAAGA
TGACTAACTTTGGATGTTATAGTCCTCTATCACCAGCCAGAGAAGATGGTGCGGACGAAAGAGGATATTACGGAA
AGACAAGAGAACTTAGAGAGGCTGAAACAACAACATGGGATAGAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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