Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g8230.t1
Gene name
Locationscaffold_30:182821..183544
Strand-
Gene length (bp)723
Transcript length (bp)342
Coding sequence length (bp)342
Protein length (aa) 114

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-19 13 79
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-06 9 89

GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g8230.t1
MSRKLAPEANRILFVKNLNYNVTAEQLFDLFGKFGPIRQIRQGIANNSKGTAFVVYEDVHDAKQACDKLNGFNFQ
NRYLVVLYHQPEKMVRTKEDITERQENLERLKQQHGIE*
Coding >Pro_DTO377G3_2|g8230.t1
ATGAGCCGAAAGCTCGCCCCCGAAGCCAATCGGATTCTCTTCGTCAAGAACCTCAACTACAACGTAACGGCAGAG
CAACTTTTCGACCTGTTTGGCAAATTTGGTCCCATTCGTCAAATTCGCCAGGGTATCGCCAATAACTCCAAGGGA
ACCGCATTTGTTGTCTACGAAGACGTCCATGACGCAAAGCAGGCATGCGATAAACTAAATGGCTTCAATTTCCAA
AACAGATATTTGGTCGTCCTCTATCACCAGCCAGAGAAGATGGTGCGGACGAAAGAGGATATTACGGAAAGACAA
GAGAACTTAGAGAGGCTGAAACAACAACATGGGATAGAATGA
Transcript >Pro_DTO377G3_2|g8230.t1
ATGAGCCGAAAGCTCGCCCCCGAAGCCAATCGGATTCTCTTCGTCAAGAACCTCAACTACAACGTAACGGCAGAG
CAACTTTTCGACCTGTTTGGCAAATTTGGTCCCATTCGTCAAATTCGCCAGGGTATCGCCAATAACTCCAAGGGA
ACCGCATTTGTTGTCTACGAAGACGTCCATGACGCAAAGCAGGCATGCGATAAACTAAATGGCTTCAATTTCCAA
AACAGATATTTGGTCGTCCTCTATCACCAGCCAGAGAAGATGGTGCGGACGAAAGAGGATATTACGGAAAGACAA
GAGAACTTAGAGAGGCTGAAACAACAACATGGGATAGAATGA
Gene >Pro_DTO377G3_2|g8230.t1
ATGAGCCGAAAGCTCGCCCCCGAAGCCAATCGGTACGTGAGAATTACTTTTTCCATGCCCCTCCCGGATTCTCAG
CACAAGTGCCATTTCGCCATCAACAGCTTGATCGTTGGGTCGAGCAGATCCCTGACATTTGGAAGTGACTCGCGC
TAACCTCTTTTTTCTCTTTTTTACAGGATTCTCTTCGTCAAGAACCTCAAGTATGTACCTGATCATTCCGCTGCT
TGGCTCCGGCTCGATTCTCCGGCAGATCAGCCGTGCAGCTCCCCATTTACAATCGCGATCAGATCGCTGACATCT
TTCTCAAAAGCTACAACGTAACGGCAGAGCAACTTTTCGACCTGTTTGGCAAATTTGGTCCCATTCGGTAATGTC
ACCCATGGTCGCGTGCGTTTGAACCCGATCTAATACCATTTCATCTACAGTCAAATTCGCCAGGGTATCGCCAAT
AACTCCAAGGGAACCGCATTTGTTGTCTACGAAGACGTCCATGACGCAAAGCAGGCATGCGATAAACTAAATGGC
TTCAATTTCCAAAACAGATATTTGGTCGGTACGTGTTGCATATGGATCTAATGAGCGTCCAGAATTATTGGAAGA
TGACTAACTTTGGATGTTATAGTCCTCTATCACCAGCCAGAGAAGATGGTGCGGACGAAAGAGGATATTACGGAA
AGACAAGAGAACTTAGAGAGGCTGAAACAACAACATGGGATAGAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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