© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g8214.t1 |
| Gene name | |
| Location | scaffold_30:137064..137945 |
| Strand | + |
| Gene length (bp) | 881 |
| Transcript length (bp) | 780 |
| Coding sequence length (bp) | 780 |
| Protein length (aa) | 260 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 2.5E-42 | 18 | 254 |
| PF00106 | adh_short | short chain dehydrogenase | 1.6E-30 | 11 | 191 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 19.41 | 7.99 | 30.84 |
| 5d_25C | Five days - 25 degrees Celsius | 16.85 | 6.37 | 27.34 |
| 7d_25C | Seven days - 25 degrees Celsius | 15.57 | 5.60 | 25.54 |
| 10d_25C | Ten days - 25 degrees Celsius | 13.58 | 4.59 | 22.57 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.99 | 0.00 | 4.11 |
| 7d_30C | Seven days - 30 degrees Celsius | 17.70 | 7.08 | 28.32 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.757578 | no |
| 3d_25C | 7d_25C | 0.595907 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.843998 | no |
| 3d_25C | 10d_25C | 0.331426 | no |
| 5d_25C | 7d_25C | 0.884001 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.926712 | no |
| 5d_25C | 10d_25C | 0.627742 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.789949 | no |
| 7d_25C | 10d_25C | 0.778104 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.508613 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g8214.t1 MVLITGLKGAHVLITGGTRGMGEAMVHKFLEEEANVSYCARTVTNTEYDDFYPTLPEGNSARAVGTAFDVASKNA LVQWVESSAQRLGRIDVIIANASPMHMEGETEHWESSFAIDVMGFVELVKVATPYLEKSPQASIIVQSSFMGREF YRSPPAAYGPCKAAQLQHVQELSHFLGPKSIRVNAISPGPILCKGGPWELYSKINPEWVEEQRLKIPLKRLGGPK EVAAVAVFLASPLASFVSGTNMLVDGGIHVGTQF* |
| Coding | >Pro_DTO377G3_2|g8214.t1 ATGGTGCTCATTACTGGTCTCAAAGGTGCCCATGTGCTTATCACAGGAGGCACGCGGGGTATGGGAGAGGCAATG GTGCATAAATTCCTGGAGGAGGAGGCCAATGTATCCTACTGCGCCCGGACCGTCACCAATACTGAGTATGATGAC TTCTATCCTACGCTCCCCGAGGGAAATAGCGCCCGCGCCGTGGGAACGGCATTCGATGTTGCTAGCAAAAATGCC CTCGTCCAGTGGGTCGAGAGCTCCGCCCAGCGACTTGGTCGAATTGACGTGATTATCGCCAATGCATCGCCGATG CATATGGAAGGTGAGACAGAGCACTGGGAGAGCAGTTTTGCGATCGATGTCATGGGTTTCGTCGAGCTGGTCAAG GTGGCCACTCCCTACTTGGAAAAGTCTCCCCAGGCATCCATCATCGTGCAGAGCTCCTTCATGGGGCGTGAATTC TACCGGTCACCCCCTGCAGCCTATGGGCCCTGCAAGGCAGCGCAGCTGCAGCATGTCCAGGAATTGTCCCACTTT TTAGGACCGAAGAGCATTCGGGTGAATGCCATCTCGCCGGGACCGATTCTGTGCAAGGGTGGTCCCTGGGAGTTG TATTCAAAGATCAACCCGGAATGGGTGGAGGAACAGCGGCTGAAAATTCCTCTGAAGCGGTTGGGTGGGCCGAAA GAGGTGGCGGCCGTGGCAGTGTTCCTGGCGAGTCCGCTGGCCAGCTTCGTATCTGGCACGAATATGTTGGTCGAC GGCGGAATTCATGTTGGCACCCAGTTTTAG |
| Transcript | >Pro_DTO377G3_2|g8214.t1 ATGGTGCTCATTACTGGTCTCAAAGGTGCCCATGTGCTTATCACAGGAGGCACGCGGGGTATGGGAGAGGCAATG GTGCATAAATTCCTGGAGGAGGAGGCCAATGTATCCTACTGCGCCCGGACCGTCACCAATACTGAGTATGATGAC TTCTATCCTACGCTCCCCGAGGGAAATAGCGCCCGCGCCGTGGGAACGGCATTCGATGTTGCTAGCAAAAATGCC CTCGTCCAGTGGGTCGAGAGCTCCGCCCAGCGACTTGGTCGAATTGACGTGATTATCGCCAATGCATCGCCGATG CATATGGAAGGTGAGACAGAGCACTGGGAGAGCAGTTTTGCGATCGATGTCATGGGTTTCGTCGAGCTGGTCAAG GTGGCCACTCCCTACTTGGAAAAGTCTCCCCAGGCATCCATCATCGTGCAGAGCTCCTTCATGGGGCGTGAATTC TACCGGTCACCCCCTGCAGCCTATGGGCCCTGCAAGGCAGCGCAGCTGCAGCATGTCCAGGAATTGTCCCACTTT TTAGGACCGAAGAGCATTCGGGTGAATGCCATCTCGCCGGGACCGATTCTGTGCAAGGGTGGTCCCTGGGAGTTG TATTCAAAGATCAACCCGGAATGGGTGGAGGAACAGCGGCTGAAAATTCCTCTGAAGCGGTTGGGTGGGCCGAAA GAGGTGGCGGCCGTGGCAGTGTTCCTGGCGAGTCCGCTGGCCAGCTTCGTATCTGGCACGAATATGTTGGTCGAC GGCGGAATTCATGTTGGCACCCAGTTTTAG |
| Gene | >Pro_DTO377G3_2|g8214.t1 ATGGTGCTCATTACTGGTCTCAAAGGTGCCCATGTGCTTATCACAGGTAAGTAAGAGAGAAATCTATCAACTTAG CTCTGACTAACGTGGACTAGGAGGCACGCGGGGTATGGGAGAGGCAATGGTGCATAAATTCCTGGAGGAGGAGGC CAATGTATCCTACTGCGCCCGGACCGTCACCAATACTGAGTATGATGACTTCTATCCTACGCTCCCCGAGGGAAA TAGCGCCCGCGCCGTGGGAACGGCATTCGATGTTGCTAGCAAAAATGCCCTCGTCCAGTGGGTCGAGAGCTCCGC CCAGCGACTTGGTCGAATTGACGTGATTATCGCCAATGGTGATTGATTTCCCGGCACTCCCTAGTTAGAATGCAA ACTGACTGGCTGTAGCATCGCCGATGCATATGGAAGGTGAGACAGAGCACTGGGAGAGCAGTTTTGCGATCGATG TCATGGGTTTCGTCGAGCTGGTCAAGGTGGCCACTCCCTACTTGGAAAAGTCTCCCCAGGCATCCATCATCGTGC AGAGCTCCTTCATGGGGCGTGAATTCTACCGGTCACCCCCTGCAGCCTATGGGCCCTGCAAGGCAGCGCAGCTGC AGCATGTCCAGGAATTGTCCCACTTTTTAGGACCGAAGAGCATTCGGGTGAATGCCATCTCGCCGGGACCGATTC TGTGCAAGGGTGGTCCCTGGGAGTTGTATTCAAAGATCAACCCGGAATGGGTGGAGGAACAGCGGCTGAAAATTC CTCTGAAGCGGTTGGGTGGGCCGAAAGAGGTGGCGGCCGTGGCAGTGTTCCTGGCGAGTCCGCTGGCCAGCTTCG TATCTGGCACGAATATGTTGGTCGACGGCGGAATTCATGTTGGCACCCAGTTTTAG |